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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018008 ID=TCONS_00018008|Name=TCONS_00018008|organism=Clytia hemisphaerica|type=transcript|length=3958bpRun BLAST on NCBI protein sequence of TCONS_00018008-protein >TCONS_00018008-protein ID=TCONS_00018008-protein|Name=TCONS_00018008-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1062bp MFRTFVIITFFLSHYVTPLKHYVIKYPTNETINLLTPKCIGKNCGPEMAGRun BLAST on NCBI transcript from alignment at sc0000282:191402..231345- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018008 ID=TCONS_00018008|Name=TCONS_00018008|organism=Clytia hemisphaerica|type=transcript|length=39944bp|location=Sequence derived from alignment at sc0000282:191402..231345- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000282:191402..231345- >TCONS_00018008 ID=TCONS_00018008|Name=TCONS_00018008|organism=Clytia hemisphaerica|type=CDS|length=41457bp|location=Sequence derived from alignment at sc0000282:191402..231345- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018008 vs. Swiss-Prot (Human)
Match: AGRG6 (Adhesion G-protein coupled receptor G6 OS=Homo sapiens GN=ADGRG6 PE=1 SV=3) HSP 1 Score: 149.443 bits (376), Expect = 3.775e-36 Identity = 119/371 (32.08%), Postives = 191/371 (51.48%), Query Frame = 2
Query: 2237 TLDGHVLAVSVHNKTIKGLKQPVKYTTKVSKANE--NGVCAFWKIEENPAFNRWSTEGCNISRTFILNNSRYVTCQCDHMTSFGVLLNIYEESFKM--VDSFALSLVSQIGCYVSIGSLLITLVALSFLKELRTKTANKIXXXXXXXXXXXXXXXXAGIQFKS--SEDACPVIGVLLHMFVLTTFCWMCIEALSLYRKAVRTFKNRGEGKIFYRTSFVVGWGVPLLIA---LTTRFS----GYFSIPPVDKRVHCMISG-LAFKYTLLLPVSVILAINMILFIPVLRKVQGHITTRSSFXXXXXXXXXXXXXXXTISCSVLLGLTWVFAYLSIGGASYVFQWLFAIINSLQGFVILLFHVFLNDRVIKSWR 3307
TL +V+A S+ N TI+ LK PV+ K ++ E + +CAFW + +N +F W+T GC R +++ C C+H T FGVL+++ + ++ ++ L+ +S IGC +S TL+ ++LR +KIL+NLS ++L L + FL S + C + VLLH F+L TF WM +EA+ +Y V+ F I ++GWG+P L+ L +R + G S C I + F T V+ +N+ +FI V+ ++ G RS+ + + R +R +S + LLG+TW FA+ + G + F +LF+I NSLQG I +FH + + V K WR
Sbjct: 764 TLVSYVMACSIGNITIQNLKDPVQIKIKHTRTQEVHHPICAFWDLNKNKSFGGWNTSGCVAHRD---SDASETVCLCNHFTHFGVLMDLPRSASQLDARNTKVLTFISYIGCGISAIFSAATLLTYVAFEKLRRDYPSKILMNLSTALLFLNLLFLLDGWITSFNVDGLCIAVAVLLHFFLLATFTWMGLEAIHMYIALVKVFNTYIRRYILKFC--IIGWGLPALVVSVVLASRNNNEVYGKESYGKEKGDEFCWIQDPVIFYVTCAGYFGVMFFLNIAMFIVVMVQICGRNGKRSN---RTLREEVLRNLRSVVSLTFLLGMTWGFAFFAWGPLNIPFMYLFSIFNSLQGLFIFIFHCAMKENVQKQWR 1126 The following BLAST results are available for this feature:
BLAST of TCONS_00018008 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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