TCONS_00017999 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017999
Unique NameTCONS_00017999
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1263

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017999 ID=TCONS_00017999|Name=TCONS_00017999|organism=Clytia hemisphaerica|type=transcript|length=1263bp
aaaaagcgtcaTATAGAATGAAGGACTAAAACctcttatattttttttaa
gtaGAGTCAACGATAGAATGTTCTCAAATTTCTTGTTTGCACAAAGCGGG
AGAGAAACAAGCTTATTATTCCTTTGTTTATAAAGGACGTCTTCTCGTAT
AATGAATGTCATTTACGGTTTATGAGGTGAAAGTGGAAATTTTGAGCGAA
GTAGGAATCAAGCATAGACGATTGTTCAAGATGGCTGCCGCTTCTACATC
ATCTGAAAAACTCAATTCTTGTGTAAAAACAGATGTATTTTTATCTCACG
ATTGGGGTGAAGATGGTATAACTAATCACAAAAAGGTCGAGAAAATCAAC
GAGGCGATCAAAGGATTGGGATACGTGACTTGGTTCGACAATGAACGAAT
GGTTGGTAACGTACGAGAACAAATGGCAAACGGGATCGAAAACACCAAAT
GTTTTATTGCTTTCATTACAAAACGTTATCACAACAAAGTGGTCTTCGGT
ACTGATAGAGATAATTGTCGAGTTGAATTCGATTTTGCCAGCATGAAAGT
CCCAATGGTAGCTGTACTTCTTGATCCATCGATGAAAAACCCTCATGATT
GGAAAGGGAATCTAGGATTAACACTAGCAACCAAATTATATATTGACTTG
TCTGGTGACATCAATGATGAAAAGTATTTGACGAATCAACTCAAACTTCT
GGAAAAAGATTTGACGTCTAAAAGAATCTTCCCAAATAAATTAGAAGAGA
CAACGAATGAATTGAAAGTTTTAGATATTCGAAAGGAAGAGAACCCTTTG
GGGAAGAACGCTGTTGAAAATCAAGAAACAATACCGGATGAAAGAATTGA
GGAAATGAAGGGGAAAGCAGATAATCTACTGAAAAATGGGGAGTGGGCCG
AAGCTATTCCTCTTTATGAAGATATTATTAAGAAACAAACTACCACTTTG
GGTGAAAACCACGAGGCTACTCTGACTACCAGATCCTTTTTGGCTTTTTG
TTATCACGAACAAAAAGATTACCAAAAAGCTAAACAAATTCTCCAGGATG
TAGGTGAGAAACAAAGTTCCACTTTGGGTGAAAACCACGAGGCTACTCTA
AATACCAGATTCTTGTTGGCTGGTTGTTATTACCAACTAAATGATTACCA
AAAAGCTATACCAATTTTCCAGGATGTAGGTGAGAAACAAAGTTCCACTT
TGGGTGAAAACCACGAGGCTACTCTAAATACCAGATTCTTGTTGGCTGGT
TGTTATTACCAAC
Run BLAST on NCBI

transcript from alignment at sc0000282:62818..66169-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017999 ID=TCONS_00017999|Name=TCONS_00017999|organism=Clytia hemisphaerica|type=transcript|length=3352bp|location=Sequence derived from alignment at sc0000282:62818..66169- (Clytia hemisphaerica)
AAAAAGCGTCATATAGAATGAAGGACTAAAACCTCTTATATTTTTTTTAA
GTAGAGTCAACGATAGAATGTTCTCAAATTTCTTGTTTGCACAAAGCGGG
AGAGAAACAAGCTTATTATTCCTTTGTTTATAAAGGACGTCTTCTCGTAT
AATGAATGTCATTTACGGTTTATGAGGTGAAAGTGGAAATTTTGAGCGAA
GTAGGAATCAAGCATAGACGATTGTTCAAGATGGCTGCCGCTTCTACATC
ATCTGAAAAACTCAATTCTTGTGTAAAAACAGATGTATTTTTATCTCACG
ATTGGGGTGAAGATGGTATAACTAATCACAAAAAGGTCGAGAAAATCAAC
GAGGCGATCAAAGGATTGGGATACGTGACTTGGTTCGACAATGAACGAAT
GGTTGGTAACGTACGAGAACAAATGGCAAACGGGATCGAAAACACCAAAT
GTTTTATTGCTTTCATTACAAAACGTTATCACAACAAAGTGGTCTTCGGT
ACTGATAGAGATAATTGTCGAGTTGAATTCGATTTTGCCAGCATGAAAGT
CCCAATGGTAGCTGTACTTCTTGATCCATCGATGAAAAACCCTCATGATT
GGAAAGGGAATCTAGGATTAACACTAGCAACCAAATTATATATTGACTTG
TCTGGTGACATCAATGATGAAAAGTATTTGACGAATCAACTCAAACTTCT
GGAAAAAGATTTGACGTCTAAAAGAATCTTCCCAAATAAATTAGAAGAGA
CAACGAATGAATTGAAAGGTAATTTTTTGTCTCGTTTTGTAGAAATTGTA
TCGATAAAGGCCAGCAAAACTAAGTTTTTAAGCTTCATGAAAACTATAAC
CATCAACTAAATTATTTTTCTCCTGATAACTACTTTAACTTTGATTATAA
ACATAGTCGAACGTGCGCATCGCACTTGGGCTCAACTTTGGCAGCTTTAA
ATTATTAATAGGCCAGATTGTGGCCAAACAAACACAAAAAGTATTGCCCA
GGCCCTATAAATATTTCATATTTCACCCAAGGAATAAGTCTGTCAAATTT
GTATTGAATAAAACTTGTATTTTCTTCGTGTAAAATAAGAAATATAACAT
TTTTGAACGCATTTTTAGCCAATCAAAATGCTAATATTTTTCATGTTGGT
TGACGATTACTAAAATTGTTATATACCTGTAGGCAAAAACAGCCACTGAA
TAATTTCTCATACACCGTGTTTAATACAGACTACGGTAGATTCCTTTGTT
CAAATTCAGGACCTGCCTGAATGATAGCAAGATGCGCAATGGTAAAACTT
CAAATTAATTCGCTGGAAGACAGAATCAAGTAAAGCAGGGCCAAATTTAG
AGGTTTTTGGATCACTCGTTGACCAAAAATGGTCAAAAAACGGTCAAAAA
CGGTCACAATCTTAAAATAGTGGATTTTGTCAAATTTTTCCATTTTTTTG
ACTTTTTGGCTTAAAAGTCCGCTGGAAAGACTTACTTTTGATTTTTTTTT
TTTGCTTGACCATGAAGCCCAATCCAATTCCTACGAGTTAGACCAAAAAT
GACAATTTCTAAATCAAACTGGGCATTACATGAGAGCTTCGCCCTCCTAC
ATAGCCCATGTCTGATATAAACGACATTGGCACTTAAAGGGTTAACTTTG
ATTATAAACATACGAGTAAAAGTGTGATAAATAGTTTAACTGGTTAAAAT
TTCGAGCGGCTCATTTAAACATGTCGATTTCATTGTATTCACTTTGATTA
CAAATATATTTGAAATCATTTTCCTCCATTGTCTGTTTATTATTCCGTCA
TTCATTTACAATTTTACGTTTTTATGATAAGGACACTTCTTTCATTCATG
CTCCCGCTATCGATATCTAAAAATATCCGAAATGCGAAATTTTACTAATG
GAAGTATCGAAAGTGCCAAGTATTTTTCTTAATTTTGAAAATTAAAAAAA
TGAGAAATTTCATAAATTTCAAATTCAAAATTGAAAGATCACCTAAATTT
GCAATTCTGTCAAATTTGAAGACAGTTCCTTGTATCAAAAGTGCCAAAGC
AATTATTGATGATTTCAAACTGTAGTTTTTATGCTTTTTTTCATTGCATC
GAAATTTGAAAATTAATTTTATGAACTCAGTTGAAGTATCTGGATGTTAT
GGGGAATTCCCGCTTTGTTCTTGTAGTAATTCCTCAAGCAGAGTTAATGG
GATCATTGATGGGGTCAAAATCATCCTCAACTAAACTGTCCTATGAAAGT
CACATCCTTATCATGTTTGCTTAAAATGGTTTAATAGATAATGTTTTAGT
CAAAAACAGAGCACGAAATGTTACCATAAAGGGTCCTATCTAAAGTTTTA
TTGTTCTGGTATTTAGGGTAGGGCAGAACTTCTAGACGTGTGTCAATTTC
TCAAAGAATACAATTAACCCATGATCACTGGGTATTCAACCAATGAAAGT
ATTGTAAATTCCTTAAATTTCATGGAAAGCTACAACTTACAAAGGACATG
GCGATTAAACATTTGTAAACTACATGGTTTGAACAGTACGGGTTCTGCAG
AAAAATCGCAAAGTGGTCAAGTAAACAGTGAGGGACAGAAACACAATTAA
ACTTCCAAAAATAAAAAGAAAACTTTAAGAAACTATCAAAGATTTAGCTT
GGATTAAAAATAAATCATTACCTTCAAAATTTCAAAATCGTAAAAAGATC
TCAAATTTCATTTAAAAAAATTTCAAAACTTAGAAAAATACTTGGTACTT
TCGATACTTCCATTTTTTCGGTATCCGATTTTTATTGTCGAATATCTGTT
TTATACAAAATTATTATACTCAAGTTAACACCCCAGTAACAAATATTACG
CTTACAGTTTTAGATATTCGAAAGGAAGAGAACCCTTTGGGGAAGAACGC
TGTTGAAAATCAAGAAACAATACCGGATGAAAGAATTGAGGAAATGAAGG
GGAAAGCAGATAATCTACTGAAAAATGGGGAGTGGGCCGAAGCTATTCCT
CTTTATGAAGATATTATTAAGAAACAAACTACCACTTTGGGTGAAAACCA
CGAGGCTACTCTGACTACCAGATCCTTTTTGGCTTTTTGTTATCACGAAC
AAAAAGATTACCAAAAAGCTAAACAAATTCTCCAGGATGTAGGTGAGAAA
CAAAGTTCCACTTTGGGTGAAAACCACGAGGCTACTCTAAATACCAGATT
CTTGTTGGCTGGTTGTTATTACCAACTAAATGATTACCAAAAAGCTATAC
CAATTTTCCAGGATGTAGGTGAGAAACAAAGTTCCACTTTGGGTGAAAAC
CACGAGGCTACTCTAAATACCAGATTCTTGTTGGCTGGTTGTTATTACCA
AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010087XLOC_010087Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017999-exon-sc0000282-1575043694:65402..66169TCONS_00017999-exon-sc0000282-1575043694:65402..66169Clytia hemisphaericaexon
TCONS_00017999-exon-sc0000282-1575043694:62818..63312TCONS_00017999-exon-sc0000282-1575043694:62818..63312Clytia hemisphaericaexon
TCONS_00017999-exon-sc0000282-1510915933:65402..66169TCONS_00017999-exon-sc0000282-1510915933:65402..66169Clytia hemisphaericaexon
TCONS_00017999-exon-sc0000282-1510915933:62818..63312TCONS_00017999-exon-sc0000282-1510915933:62818..63312Clytia hemisphaericaexon
TCONS_00017999-exon-sc0000282-1491911889:65402..66169TCONS_00017999-exon-sc0000282-1491911889:65402..66169Clytia hemisphaericaexon
TCONS_00017999-exon-sc0000282-1491911889:62818..63312TCONS_00017999-exon-sc0000282-1491911889:62818..63312Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000282supercontigsc0000282:62818..66169 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.11734	0	0.345359	0.235399	0.590685	0.567818	3.40836	2.34712	1.29591	2.13097	0.550864	0.185461	10.0632	5.81129	0.581996	2.03959	1.62573	1.2215	14.379	14.677	0	0	0.505567	0.216304	0.752838	0.709333	0	0	0.51483	0.41836
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017999 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top