|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017987 ID=TCONS_00017987|Name=TCONS_00017987|organism=Clytia hemisphaerica|type=transcript|length=748bp
TGATTATCAATTTTACCAATCTTCCTGCTCCTCTCAAAGGATGGAAAAAC
AAAAATCCACCTGCAACTGACTTAAGTGTCGGTGCATTTGTAATCCGTGC
GAGAGAATGGCGAAATTACATCCACCACACAGATCCAGATAAACTCAATC
AAACAGACTTTAATCAGAAATGGATGGAAGGAGAGCAAATCATTAACAAT
CTTGGCTTTACTTACGACACAACGCAGCTGAAAACAACGTTATTGGACCT
AAAGTACGAGAATGTTGTCAAATCTATGCATTTGTATCTAGAGAGAAAGC
AAGACACACTTTCTAAACAACAGATGGCCCTAGCTACTCAACATACGGCC
CTGGATACTAAACATACGGCCCTGGATACTAAACAGACGGCCCTGGTTAC
CAAACAGACGGTGCTGGATACGAAACAGACGGCGCTGGATACCAAACAGA
CGGTCCTGGATTCTAAACATACCACCCTAGCAGACAATCAGGCAGCCCTT
GAGAATAAACACAAATCTCTCGACAACCAACAAGCATCATTATCTCAAGA
TGTTACAGATTTACAAATTTCAACAACTCAAAAAATTGGCAACCTCGCTC
AACAGTTATCACTTCATCATAATCTCAGTTCGGAGGAAATCAAAGCTTTG
GCTGAAAGATTGGAGGAGATTGCCAACATACAGCAAAGCATGCGCAAGAA
CTCGCCAATGATGAAATATCATTCAGGATCGTGTTGCTTGGACGAGGT Run BLAST on NCBI protein sequence of TCONS_00017987-protein >TCONS_00017987-protein ID=TCONS_00017987-protein|Name=TCONS_00017987-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
IINFTNLPAPLKGWKNKNPPATDLSVGAFVIRAREWRNYIHHTDPDKLNQ
TDFNQKWMEGEQIINNLGFTYDTTQLKTTLLDLKYENVVKSMHLYLERKQ
DTLSKQQMALATQHTALDTKHTALDTKQTALVTKQTVLDTKQTALDTKQT
VLDSKHTTLADNQAALENKHKSLDNQQASLSQDVTDLQISTTQKIGNLAQ
QLSLHHNLSSEEIKALAERLEEIANIQQSMRKNSPMMKYHSGSCCLDE Run BLAST on NCBI transcript from alignment at sc0000282:265954..267209+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017987 ID=TCONS_00017987|Name=TCONS_00017987|organism=Clytia hemisphaerica|type=transcript|length=1256bp|location=Sequence derived from alignment at sc0000282:265954..267209+ (Clytia hemisphaerica)
TGATTATCAATTTTACCAATCTTCCTGCTCCTCTCAAAGGATGGAAAAAC
AAAAATCCACCTGCAACTGACTTAAGTGTCGGTGCATTTGTAATCCGTGC
GAGAGAATGGCGAAATTACATCCACCACACAGATCCAGATAAACTCAATC
AAACAGACTTTAATCAGAAATGGATGGAAGGAGAGCAAATCATTAACAAT
CTTGGCTTTACTTACGACACAACGCAGCTGAAAACAACGTTATTGGACCT
AAAGTACGAGAATGTTGTCAAATCTATGCATTTGTATCTAGAGAGAAAGC
AAGACACACTTTCTAAACAACAGATGGCCCTAGCTACTCAACATACGGCC
CTGGATACTAAACATACGGCCCTGGATACTAAACAGACGGCCCTGGTTAC
CAAACAGACGGTGCTGGATACGAAACAGACGGCGCTGGATACCAAACAGA
CGGTCCTGGATTCTAAACATACCACCCTAGCAGACAATCAGGCAGCCCTT
GAGAATAAACACAAATCTCTCGACAACCAACAAGCATCATTATCTCAAGA
TGTTACAGATTTACAAATTTCAACAACTCAAAAAATTGGCAACCTCGCTC
AACAGTTATCACTTCATCATAATCTCAGTTCGGAGGAAATCAAAGCTTTG
GCTGAAAGATTGGAGGAGATTGCCAACATACAGCAAAGCATGCGCAAGAA
CTCGCCAATGATGAAATATCATTCAGGTAAGTTAGGTCCCAATTAGctta
aatgtttataaattATATTTCTACAGGTGAAGAAGCTCTTCCTGTCATTA
ACGAAACATAATTTTACACTAGTCAAAAATCTGATCTAATGTAATATTAT
ACTATAAATCCTGCGGTAGTAAGACCCATTCCTAATGCTCATAtctatca
aaatttaaactttgGGCGAGAATTTAGATCACTTCGAATTTATTAAATTG
GATTATCGATTTGGGAGGATTTCAGTGACTTCTAACCTATAGTCCATACC
GAACTCGAACACTGATCAGCTTTTAAATCCTAAGATCCTCgggtcttaag
tctcatgttgaAACTCAGAAGTTTTTTAGAACACGTAGCAATCATTTGTG
GCGtttaaaaattagttccacAAAATGCACCAATTTAGTAATCTCGCACC
GTGAAAATAAGTTCCACCAAAATaagataataatattttatccaTGATTT
GACCTAATATACCTATAAATCGACGTTCATACAGGATCGTGTTGCTTGGA
CGAGGT Coding sequence (CDS) from alignment at sc0000282:265954..267209+ >TCONS_00017987 ID=TCONS_00017987|Name=TCONS_00017987|organism=Clytia hemisphaerica|type=CDS|length=1488bp|location=Sequence derived from alignment at sc0000282:265954..267209+ (Clytia hemisphaerica)
ATTATCAATTTTACCAATCTTCCTGCTCCTCTCAAAGGATGGAAAAACAA
AAATCCACCTGCAACTGACTTAAGTGTCGGTGCATTTGTAATCCGTGCGA
GAGAATGGCGAAATTACATCCACCACACAGATCCAGATAAACTCAATCAA
ACAGACTTTAATCAGAAATGGATGGAAGGAGAGCAAATCATTAACAATCT
TGGCTTTACTTACGACACAACGCAGCTGAAAACAACGTTATTGGACCTAA
AGTACGAGAATGTTGTCAAATCTATGCATTTGTATCTAGAGAGAAAGCAA
GACACACTTTCTAAACAACAGATGGCCCTAGCTACTCAACATACGGCCCT
GGATACTAAACATACGGCCCTGGATACTAAACAGACGGCCCTGGTTACCA
AACAGACGGTGCTGGATACGAAACAGACGGCGCTGGATACCAAACAGACG
GTCCTGGATTCTAAACATACCACCCTAGCAGACAATCAGGCAGCCCTTGA
GAATAAACACAAATCTCTCGACAACCAACAAGCATCATTATCTCAAGATG
TTACAGATTTACAAATTTCAACAACTCAAAAAATTGGCAACCTCGCTCAA
CAGTTATCACTTCATCATAATCTCAGTTCGGAGGAAATCAAAGCTTTGGC
TGAAAGATTGGAGGAGATTGCCAACATACAGCAAAGCATGCGCAAGAACT
CGCCAATGATGAAATATCATTCAGGATCGTGTTGCTTGGACGAGATTATC
AATTTTACCAATCTTCCTGCTCCTCTCAAAGGATGGAAAAACAAAAATCC
ACCTGCAACTGACTTAAGTGTCGGTGCATTTGTAATCCGTGCGAGAGAAT
GGCGAAATTACATCCACCACACAGATCCAGATAAACTCAATCAAACAGAC
TTTAATCAGAAATGGATGGAAGGAGAGCAAATCATTAACAATCTTGGCTT
TACTTACGACACAACGCAGCTGAAAACAACGTTATTGGACCTAAAGTACG
AGAATGTTGTCAAATCTATGCATTTGTATCTAGAGAGAAAGCAAGACACA
CTTTCTAAACAACAGATGGCCCTAGCTACTCAACATACGGCCCTGGATAC
TAAACATACGGCCCTGGATACTAAACAGACGGCCCTGGTTACCAAACAGA
CGGTGCTGGATACGAAACAGACGGCGCTGGATACCAAACAGACGGTCCTG
GATTCTAAACATACCACCCTAGCAGACAATCAGGCAGCCCTTGAGAATAA
ACACAAATCTCTCGACAACCAACAAGCATCATTATCTCAAGATGTTACAG
ATTTACAAATTTCAACAACTCAAAAAATTGGCAACCTCGCTCAACAGTTA
TCACTTCATCATAATCTCAGTTCGGAGGAAATCAAAGCTTTGGCTGAAAG
ATTGGAGGAGATTGCCAACATACAGCAAAGCATGCGCAAGAACTCGCCAA
TGATGAAATATCATTCAGGATCGTGTTGCTTGGACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017987-exon-sc0000282-1491911889:265954..266679 | TCONS_00017987-exon-sc0000282-1491911889:265954..266679 | Clytia hemisphaerica | exon |
| TCONS_00017987-exon-sc0000282-1510915933:265954..266679 | TCONS_00017987-exon-sc0000282-1510915933:265954..266679 | Clytia hemisphaerica | exon |
| TCONS_00017987-exon-sc0000282-1575043694:265954..266679 | TCONS_00017987-exon-sc0000282-1575043694:265954..266679 | Clytia hemisphaerica | exon |
| TCONS_00017987-exon-sc0000282-1491911889:267188..267209 | TCONS_00017987-exon-sc0000282-1491911889:267188..267209 | Clytia hemisphaerica | exon |
| TCONS_00017987-exon-sc0000282-1510915933:267188..267209 | TCONS_00017987-exon-sc0000282-1510915933:267188..267209 | Clytia hemisphaerica | exon |
| TCONS_00017987-exon-sc0000282-1575043694:267188..267209 | TCONS_00017987-exon-sc0000282-1575043694:267188..267209 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000282 | supercontig | sc0000282:265954..267209 + |
Blast
The following BLAST results are available for this feature:
|
