TCONS_00017955 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017955
Unique NameTCONS_00017955
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length294

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017955 ID=TCONS_00017955|Name=TCONS_00017955|organism=Clytia hemisphaerica|type=transcript|length=294bp
GTCAAATTGCATTCTTTGACATAAGGGTGTTTAACCCATTAGCAAAACGA
CATGTTAGCCAGGACCTTAGGAAATGTTTTGAGGCGAATGAACGTGAAAA
GAAGAGAGCTTACAATCGACGGGTGCTTGAAATTGAACATGGTTCTTTTA
CCCCACTAGTTTTCTCGGCAACCGGTGGCATGGGGAGAGAATGCACCAAG
TTTATTACACGCTTGGCGGATATGATGGCTAACAAACAGGGGAAGCCCTA
CGGAGAAGTTGTTACATGGATGAAGAGAAAGATTATGATCGGAC
Run BLAST on NCBI

transcript from alignment at sc0000279:159322..159615

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017955 ID=TCONS_00017955|Name=TCONS_00017955|organism=Clytia hemisphaerica|type=transcript|length=294bp|location=Sequence derived from alignment at sc0000279:159322..159615 (Clytia hemisphaerica)
GTCCGATCATAATCTTTCTCTTCATCCATGTAACAACTTCTCCGTAGGGC
TTCCCCTGTTTGTTAGCCATCATATCCGCCAAGCGTGTAATAAACTTGGT
GCATTCTCTCCCCATGCCACCGGTTGCCGAGAAAACTAGTGGGGTAAAAG
AACCATGTTCAATTTCAAGCACCCGTCGATTGTAAGCTCTCTTCTTTTCA
CGTTCATTCGCCTCAAAACATTTCCTAAGGTCCTGGCTAACATGTCGTTT
TGCTAATGGGTTAAACACCCTTATGTCAAAGAATGCAATTTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010067XLOC_010067Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017955-exon-sc0000279-1491911889:159322..159615TCONS_00017955-exon-sc0000279-1491911889:159322..159615Clytia hemisphaericaexon
TCONS_00017955-exon-sc0000279-1510915933:159322..159615TCONS_00017955-exon-sc0000279-1510915933:159322..159615Clytia hemisphaericaexon
TCONS_00017955-exon-sc0000279-1575043694:159322..159615TCONS_00017955-exon-sc0000279-1575043694:159322..159615Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000279supercontigsc0000279:159322..159615 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.416273	0.405932	0	0.461119	0	0.4436	0	1.5031	0	0.869009	0	0	0.5537	0.287512	0	0	0	0.320297	0	0.463052	0	0.588942	0.477291	0	0	0.398878	0	0	0.462031	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017955 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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