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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017954 ID=TCONS_00017954|Name=TCONS_00017954|organism=Clytia hemisphaerica|type=transcript|length=969bp
ATCGGTTCAAAGACTTCTGACTTGCTAACTATGCTATAGTATAACATAAG
ATACACATtgatgtattttttgttttagagtCGTGGATCATCATGCACAC
CATATCAATGCAACGTCGTAAAATCGTTCttctttgtatttgtattgttg
TCATGGCGTTGCTAGCAGCAGCAACAGGTGGTAACCAATGGATACTAACG
CATGGACACCATATTGGGTTATGGAATGAATGCACAAGATATGATGGATT
TTGTTATATACCGCATCGCTACAGATCAATCGATGCCTTAAAGGTCATTA
AGGCTCTCATGATCTTAGCTTGCTTATCGGCAATAGCTGCTTTTCTCTTT
AATGTTTATATCGTATGCGTCGGAGAAAATGCCGCTAAATATATATCTAT
TTGTTTATTAGCATCCGCCATTTTTACAATGATTGctttaattattttta
tgaCGAATGGGAGTAAATTTCTACGATTCACAAACAATAATCCCTATAGT
TATGGTTGGTGCTTTGTATTAGGGTGGTTGGCGGTTGGATTCTCGATTTT
GGGCGCCGTTGGCGGGCTAAAGATTGGTGTAACGTACCAGATGCATAAAG
CAGTGATGGTTTGACTTCGAGATGACTGTTTTCTTTGGGTGAAGGCTTCA
AGCTTTCCATTTAATCCTTATTATGGGACAGGACATCGGAGAATATGCTA
ACACTTTGAACTTTTTGTCAATTTCTACATCTGCGTCTTCGTTCCTAGTG
AAAATATCCTATAAATTCAGCCAACATGAGGAACTTCACACTGACTTTTC
ATCTCCATTTGAAATTTGATGGAAAAAATTCATACTACTTAACTGTATTT
TTTTTGAGCTGGGAACAATTTCTATCCCTATCGGAACTTCGTTAGAAATC
CTCATCCCTCTCTGTAGGAAAATTTACATCagggctgtgaaacaggggcG
CATTTCATTAAACataaag Run BLAST on NCBI protein sequence of TCONS_00017954-protein >TCONS_00017954-protein ID=TCONS_00017954-protein|Name=TCONS_00017954-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
MHTISMQRRKIVLLCICIVVMALLAAATGGNQWILTHGHHIGLWNECTRY
DGFCYIPHRYRSIDALKVIKALMILACLSAIAAFLFNVYIVCVGENAAKY
ISICLLASAIFTMIALIIFMTNGSKFLRFTNNNPYSYGWCFVLGWLAVGF
SILGAVGGLKIGVTYQMHKAVMV Run BLAST on NCBI transcript from alignment at sc0000279:118460..119428 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017954 ID=TCONS_00017954|Name=TCONS_00017954|organism=Clytia hemisphaerica|type=transcript|length=969bp|location=Sequence derived from alignment at sc0000279:118460..119428 (Clytia hemisphaerica)
ctttatGTTTAATGAAATGCgcccctgtttcacagccctGATGTAAATTT
TCCTACAGAGAGGGATGAGGATTTCTAACGAAGTTCCGATAGGGATAGAA
ATTGTTCCCAGCTCAAAAAAAATACAGTTAAGTAGTATGAATTTTTTCCA
TCAAATTTCAAATGGAGATGAAAAGTCAGTGTGAAGTTCCTCATGTTGGC
TGAATTTATAGGATATTTTCACTAGGAACGAAGACGCAGATGTAGAAATT
GACAAAAAGTTCAAAGTGTTAGCATATTCTCCGATGTCCTGTCCCATAAT
AAGGATTAAATGGAAAGCTTGAAGCCTTCACCCAAAGAAAACAGTCATCT
CGAAGTCAAACCATCACTGCTTTATGCATCTGGTACGTTACACCAATCTT
TAGCCCGCCAACGGCGCCCAAAATCGAGAATCCAACCGCCAACCACCCTA
ATACAAAGCACCAACCATAACTATAGGGATTATTGTTTGTGAATCGTAGA
AATTTACTCCCATTCGtcataaaaataattaaagCAATCATTGTAAAAAT
GGCGGATGCTAATAAACAAATAGATATATATTTAGCGGCATTTTCTCCGA
CGCATACGATATAAACATTAAAGAGAAAAGCAGCTATTGCCGATAAGCAA
GCTAAGATCATGAGAGCCTTAATGACCTTTAAGGCATCGATTGATCTGTA
GCGATGCGGTATATAACAAAATCCATCATATCTTGTGCATTCATTCCATA
ACCCAATATGGTGTCCATGCGTTAGTATCCATTGGTTACCACCTGTTGCT
GCTGCTAGCAACGCCATGAcaacaatacaaatacaaagaaGAACGATTTT
ACGACGTTGCATTGATATGGTGTGCATGATGATCCACGactctaaaacaa
aaaatacatcaATGTGTATCTTATGTTATACTATAGCATAGTTAGCAAGT
CAGAAGTCTTTGAACCGAT Coding sequence (CDS) from alignment at sc0000279:118460..119428 >TCONS_00017954 ID=TCONS_00017954|Name=TCONS_00017954|organism=Clytia hemisphaerica|type=CDS|length=522bp|location=Sequence derived from alignment at sc0000279:118460..119428 (Clytia hemisphaerica)
TCAAACCATCACTGCTTTATGCATCTGGTACGTTACACCAATCTTTAGCC
CGCCAACGGCGCCCAAAATCGAGAATCCAACCGCCAACCACCCTAATACA
AAGCACCAACCATAACTATAGGGATTATTGTTTGTGAATCGTAGAAATTT
ACTCCCATTCGtcataaaaataattaaagCAATCATTGTAAAAATGGCGG
ATGCTAATAAACAAATAGATATATATTTAGCGGCATTTTCTCCGACGCAT
ACGATATAAACATTAAAGAGAAAAGCAGCTATTGCCGATAAGCAAGCTAA
GATCATGAGAGCCTTAATGACCTTTAAGGCATCGATTGATCTGTAGCGAT
GCGGTATATAACAAAATCCATCATATCTTGTGCATTCATTCCATAACCCA
ATATGGTGTCCATGCGTTAGTATCCATTGGTTACCACCTGTTGCTGCTGC
TAGCAACGCCATGAcaacaatacaaatacaaagaaGAACGATTTTACGAC
GTTGCATTGATATGGTGTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017954-exon-sc0000279-1491911889:118460..119428 | TCONS_00017954-exon-sc0000279-1491911889:118460..119428 | Clytia hemisphaerica | exon |
| TCONS_00017954-exon-sc0000279-1510915933:118460..119428 | TCONS_00017954-exon-sc0000279-1510915933:118460..119428 | Clytia hemisphaerica | exon |
| TCONS_00017954-exon-sc0000279-1575043694:118460..119428 | TCONS_00017954-exon-sc0000279-1575043694:118460..119428 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000279 | supercontig | sc0000279:118460..119428 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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