TCONS_00017937 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017937
Unique NameTCONS_00017937
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length659

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017937 ID=TCONS_00017937|Name=TCONS_00017937|organism=Clytia hemisphaerica|type=transcript|length=659bp
ACCGGGTTCGCTACAAAAAAGCTTGTCTCTgtttaaacttaatttttttg
aacTATTTGAACAGTAAACTTTTGATGgctcaattttcaaacttttttca
ttaaaaCATACCCTCCTATGCATAGGATGAATTTCGAATTGATTAACAGC
AGGTTTCTCAAGTCCCGCATCTAAGAGTGCTTGAATATGTTCTCCATTGA
AATTGGAAACTCCAATACTTTTTGCTTTTCCCTCTTTCTTTAGTTCCATC
ATAGCTTTCCATGAATCCAAGACTTTTCCAGGCATCGGAGTATGAATCAA
AAATAAGTCAACATAATCCAAGCCCAGTTTATCAAGACTTTCTTTCAAGC
TTTCTTTAGCTGTCTCATAACCGTGTTTATGAAGATCCAGTTTAGTCACA
ACAAATAGGTCTACGCGTTTGATGGAACTAGCTTTCAAAGCTCTGCCGAC
AGACTCTTCATTTCCATACAAAGCAGCTGTGTCAATAAGTCGATAGCCTT
CCTTAAGAGCAGCAGTAACAGAATTGTAAGCAACGTCACCTTCGTTGTCT
AGGTCCCAACATCCAAAACCAAACAGAGGCATTGAATTTCCGTCACACAA
ATCAACTTTTTCTCCAATCGAAGCCATTTTAATCACTGAAATTTTTTCCC
Tgctattat
Run BLAST on NCBI

transcript from alignment at sc0000279:80364..81077-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017937 ID=TCONS_00017937|Name=TCONS_00017937|organism=Clytia hemisphaerica|type=transcript|length=714bp|location=Sequence derived from alignment at sc0000279:80364..81077- (Clytia hemisphaerica)
ACCGGGTTCGCTACAAAAAAGCTTGTCTCTGTTTAAACTTAATTTTTTTG
AACTATTTGAACAGTAAACTTTTGATGGCTCAATTTTCAAACTTTTTTCA
TTAAAACATACCCTCCTATGCATAGGATGAATTTCGAATTGATTAACAGC
AGGTTTCTCAAGTCCCGCATCTAAGAGTGCTTGAATATGTTCTCCATTGA
AATTGGAAACTCCAATACTTTTTGCTTTTCCCTCTTTCTTTAGTTCCATC
ATAGCTTTCCATGAATCCAAGACTTTTCCAGGCATCGGAGTATGAATCAA
AAATAAGTCAACATAATCCAAGCCCAGTTTATCAAGACTTTCTTTCAAGC
TTTCTTTAGCTGTCTCATAACCGTGTTTATGAAGATCCAGTTTAGTCACA
ACAAATAGGTCTTCACGTTTGATGGAACTAGCTTTTAAAGCTCTGCCGAN
TCACAACAAATAGGTCTACGCGTTTGATGGAACTAGCTTTCAAAGCTCTG
CCGACAGACTCTTCATTTCCATACAAAGCAGCTGTGTCAATAAGTCGATA
GCCTTCCTTAAGAGCAGCAGTAACAGAATTGTAAGCAACGTCACCTTCGT
TGTCTAGGTCCCAACATCCAAAACCAAACAGAGGCATTGAATTTCCGTCA
CACAAATCAACTTTTTCTCCAATCGAAGCCATTTTAATCACTGAAATTTT
TTCCCTGCTATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010052XLOC_010052Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017937-exon-sc0000279-1575043694:80670..81077TCONS_00017937-exon-sc0000279-1575043694:80670..81077Clytia hemisphaericaexon
TCONS_00017937-exon-sc0000279-1575043694:80364..80614TCONS_00017937-exon-sc0000279-1575043694:80364..80614Clytia hemisphaericaexon
TCONS_00017937-exon-sc0000279-1510915933:80670..81077TCONS_00017937-exon-sc0000279-1510915933:80670..81077Clytia hemisphaericaexon
TCONS_00017937-exon-sc0000279-1510915933:80364..80614TCONS_00017937-exon-sc0000279-1510915933:80364..80614Clytia hemisphaericaexon
TCONS_00017937-exon-sc0000279-1491911889:80670..81077TCONS_00017937-exon-sc0000279-1491911889:80670..81077Clytia hemisphaericaexon
TCONS_00017937-exon-sc0000279-1491911889:80364..80614TCONS_00017937-exon-sc0000279-1491911889:80364..80614Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000279supercontigsc0000279:80364..81077 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.565311	1.24274	0	2.0431	2.71293	2.71714	1.2374	0	0	0	0.658256	0	0	0	0	0	0	0	0	0	1.28668	0	0.570164	0	0
Blast
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BLAST of TCONS_00017937 vs. Swiss-Prot (Human)
Match: AK1C3 (Aldo-keto reductase family 1 member C3 OS=Homo sapiens GN=AKR1C3 PE=1 SV=4)

HSP 1 Score: 118.627 bits (296), Expect = 2.636e-31
Identity = 80/199 (40.20%), Postives = 108/199 (54.27%), Query Frame = -3 
Query:  112 MASIGEKVDLCDGNSMPLFGFGCWDLDNEGDVAYNSVTA-ALKEGYRLIDTAALYGNEESVGRALKAS----SIKRVDLFVVTKLDLHKHGYETAKESLKESLDKLGLDYVDLFLIHTPM---PGKVLD-----------------SWKAMMELKKEGKAKSIGVSNFNGEHIQALLD-AGLE-KPAVNQFEIHPMHRR 627
            M S  + V L DG+ MP+ GFG +            VT  A++ G+R ID+A LY NEE VG A+++     S+KR D+F  +KL    H  E  + +L+ SL K  LDYVDL+LIH+PM   PG+ L                  +W+AM + K  G AKSIGVSNFN   ++ +L+  GL+ KP  NQ E HP   R
Sbjct:    1 MDSKHQCVKLNDGHFMPVLGFGTYAPPEVPRSKALEVTKLAIEAGFRHIDSAHLYNNEEQVGLAIRSKIADGSVKREDIFYTSKLWSTFHRPELVRPALENSLKKAQLDYVDLYLIHSPMSLKPGEELSPTDENGKVIFDIVDLCTTWEAMEKCKDAGLAKSIGVSNFNRRQLEMILNKPGLKYKPVCNQVECHPYFNR 199
The following BLAST results are available for this feature:
BLAST of TCONS_00017937 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AK1C32.636e-3140.20Aldo-keto reductase family 1 member C3 OS=Homo sap... [more]
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