TCONS_00017931 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017931
Unique NameTCONS_00017931
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017931 ID=TCONS_00017931|Name=TCONS_00017931|organism=Clytia hemisphaerica|type=transcript|length=463bp
CACAagtattttggtttaaatttacagaaaaattaCAAAGACGAACTAAA
TGAACACTATAGCTGAATTGTTTTTGGGATGTTTACTTGGTTTAAAAGAT
TCAATTCTTGGTTTGATTGTCTTGACAAAGATTGATAGTGAAGAAAAAGA
GCGAGATGGTAGACCTCCAAGTAGAAGAAGTACAAGGCAAAGACAACCAG
ATAAAAAGAAAGTTCAAATTCTTCCTTTGTTGGCACAGAGCTGTCTTTTA
AATGGAGGTGCTCTTTTGgtAAGTGTTCTGGTATTTGAAGGATATATCAT
TCCTGCTGTCCAATACATTATGGTGTTTGTCTCATCATTTTTCATTAGAG
ATAATGGCTTACAAAGTTCCCTTTGGTCATATNtttctcgagctgtactt
tatattttttcatgaaattttgcacactgatgcaaaatggcaatacctaa
aatatgacagagc
Run BLAST on NCBI

transcript from alignment at sc0000279:306998..308522+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017931 ID=TCONS_00017931|Name=TCONS_00017931|organism=Clytia hemisphaerica|type=transcript|length=1525bp|location=Sequence derived from alignment at sc0000279:306998..308522+ (Clytia hemisphaerica)
CACAagtattttggtttaaatttacagaaaaattaCAAAGACGAACTAAA
TGAACACTATAGCTGAATTGTTTTTGGGATGTTTACTTGGTTTAAAAGAT
TCAATTCTTGGTTTGATTGTCTTGACAAAGATTGATAGTGAAGAAAAAGA
GCGAGATGGTAGACCTCCAAGTAGAAGAAGTACAAGGCAAAGACAACCAG
ATAAAAAGTAAGATGTTAATTCATAACATTATTTATTAAAACAAACGTTT
ATGAAAGATTTATCTGTTAATTTATAGAAGATATTTAGCCTTCATATAAT
AACTATTATGTAATTAACcaaaatcaacaattttttgtttcaggAAAGTA
NAATAACTATTATGTAATTAACCAAAATCAACAACTTTTTGTTTCAGGAA
AGTTCAAATTCTTCCTTTGTTGGCACAGAGCTGTCTTTTAAATGGAGGTG
CTCTTTTGGTATGTCTAGAGTAAAATTCTATATTTTGAAGTAAATTGCAG
TtttgttatgactgtttttaaactttcaatCATGATAATATTATTGCCCT
gctttttgccagtagtggaaaatttaagctaaaaaaattagatgaaacag
aaattttttaaatagacaaaaaaaatcAGCTAAAAAAATCAGCCACGTCA
ATTGAATTGAataatttatttgaaatttcttttttttacttttaggtAAG
TGTTCTGGTATTTGAAGGATATATCATTCCTGCTGTCCAATACATTATGG
TGTTTGTCTCATGTGAGTCTCATTGTTGAGTTATCGAGCAATTTAATAAG
AAACAGGATACCTTAAGTGAAAAAATCACCTCAACTTAAAGTCtatctgt
ctcaatataatttacagaggagacaaaaaaggctataaACTTTGATGAAA
TTGGAATTagttagcggttttgtgcttgtcAAAATAACAAACAGGAATGg
atattatcaaaaagaaaaaattaaaaaaaaattgtaaaataatgattcat
aatgaaaaagaagaaaatcaacttcttcaataattgtgctATAATCGTCA
TTTTCACACtagtgattctttgatcttagaacatcatcaatgtggaaaaa
ctttcaaaaagcttttttcGAGAGAAGATAATAGTCGGAAGTTTTATTGC
TAATTGACTTCAAAAACCACCAAAACAAGTCAACCAGAgcaaagttttta
attttattgttttttgttaaTAAAAGTCATATTCAGTCATATTCAGTTCA
ATCATATTCAGTTTCACCAGAACTAGGCCTACTAGAAGGCAAAGTAGGCC
TTAAGAAATActaatttaaaacaaaacctttaaattcaaTCTTGTTAAAA
TTGATCCTACAAAGATCAAACAATATTTTCTTCTCTTCTTCTTTCAGCAT
TTTTCATTAGAGATAATGGCTTACAAAGTTCCCTTTGGTCATATNtttct
cgagctgtactttatattttttcatgaaattttgcacactgatgcaaaat
ggcaatacctaaaatatgacagagc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010049XLOC_010049Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017931-exon-sc0000279-1491911889:306998..307204TCONS_00017931-exon-sc0000279-1491911889:306998..307204Clytia hemisphaericaexon
TCONS_00017931-exon-sc0000279-1510915933:306998..307204TCONS_00017931-exon-sc0000279-1510915933:306998..307204Clytia hemisphaericaexon
TCONS_00017931-exon-sc0000279-1575043694:306998..307204TCONS_00017931-exon-sc0000279-1575043694:306998..307204Clytia hemisphaericaexon
TCONS_00017931-exon-sc0000279-1491911889:307395..307455TCONS_00017931-exon-sc0000279-1491911889:307395..307455Clytia hemisphaericaexon
TCONS_00017931-exon-sc0000279-1510915933:307395..307455TCONS_00017931-exon-sc0000279-1510915933:307395..307455Clytia hemisphaericaexon
TCONS_00017931-exon-sc0000279-1575043694:307395..307455TCONS_00017931-exon-sc0000279-1575043694:307395..307455Clytia hemisphaericaexon
TCONS_00017931-exon-sc0000279-1491911889:307693..307759TCONS_00017931-exon-sc0000279-1491911889:307693..307759Clytia hemisphaericaexon
TCONS_00017931-exon-sc0000279-1510915933:307693..307759TCONS_00017931-exon-sc0000279-1510915933:307693..307759Clytia hemisphaericaexon
TCONS_00017931-exon-sc0000279-1575043694:307693..307759TCONS_00017931-exon-sc0000279-1575043694:307693..307759Clytia hemisphaericaexon
TCONS_00017931-exon-sc0000279-1491911889:308395..308522TCONS_00017931-exon-sc0000279-1491911889:308395..308522Clytia hemisphaericaexon
TCONS_00017931-exon-sc0000279-1510915933:308395..308522TCONS_00017931-exon-sc0000279-1510915933:308395..308522Clytia hemisphaericaexon
TCONS_00017931-exon-sc0000279-1575043694:308395..308522TCONS_00017931-exon-sc0000279-1575043694:308395..308522Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000279supercontigsc0000279:306998..308522 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.5114	16.5302	43.2432	54.0305	32.9095	27.2928	22.7196	31.8342	19.6791	14.6253	22.9619	13.9983	17.0149	16.4943	15.2077	14.0095	21.8115	20.8215	14.9112	19.4448	21.6019	19.309	9.40572	12.6526	18.6488	20.8145	14.4245	13.8598	14.8193	11.2534
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017931 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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