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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017928 ID=TCONS_00017928|Name=TCONS_00017928|organism=Clytia hemisphaerica|type=transcript|length=2039bpRun BLAST on NCBI transcript from alignment at sc0000279:266127..285922+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017928 ID=TCONS_00017928|Name=TCONS_00017928|organism=Clytia hemisphaerica|type=transcript|length=19796bp|location=Sequence derived from alignment at sc0000279:266127..285922+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00017928 vs. Swiss-Prot (Human)
Match: RGSL (Regulator of G-protein signaling protein-like OS=Homo sapiens GN=RGSL1 PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 3.871e-33 Identity = 94/376 (25.00%), Postives = 182/376 (48.40%), Query Frame = 3
Query: 549 GNNKLINNERNLKNIQQPA-KPRSFYDILSEPAQFDFFKRYLVKEKSETPLLFWSAVESMRTMSKSGKARQGRATGIVKRYFGASTDYGKGLQCEADIIRDICLMDKVSPAMLVSAQACVAKSLEENWFTKYLQTF----QDDGGMIGVQILPVFGHKDLKTVKQKS--RGLWRM--FTRNVISFRRGIMNPDTLKMFRGFLILQHEINVEQFKASQNAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVQHPPRIVINNKLIYTERLVADLQFWSEVERYKDFADAVVLCAKLGNYTKDDELIVVKKAQTIVECFIESQISPKVQINISNELGDNIINLVSNGIIERGLFHEAALTTFSILINFWKKFCLFR 1649
N K+ +R L +++P+ +PR+ ++L +FF+ +L + K++ PL F +AV+ + ++ + K + ++K +F + LQC+A II++I M V+ + L++ Q V KS+EE WF Y F Q+ VQI K + T Q+S +G RM F R+ +RR ++NP + F +L + + + E F + N + + + R + +++I + DL F+SE+E++ D + + Y ++D +++ K I + F+ S I PK+++N+ D I+ ++ G ++R +FH A ++ F +++ FWK+FC ++
Sbjct: 624 SNRKMSLLKRTL--VRKPSMRPRNLTEVLLNTQHLEFFREFLKERKAKIPLQFLTAVQKI-SIETNEKICKSLIENVIKTFFQGQLSPEEMLQCDAPIIKEIASMRHVTTSTLLTLQGHVMKSIEEKWFKDYQDLFPPHHQEVEVQSEVQISSRKPSKIVSTYLQESQKKGWMRMISFIRSFCKYRRFMLNPSKRQEFEDYLHQEMQNSKENFTTAHNTSGRSAPPSTNVRSADQENGEITLVK-------------RRIFGHRIITVNFAINDLYFFSEMEKFNDLVSSAHMLQVNRAYNENDVILMRSKMNIIQKLFLNSDIPPKLRVNVPEFQKDAILAAITEGYLDRSVFHGAIMSVFPVVMYFWKRFCFWK 983 The following BLAST results are available for this feature:
BLAST of TCONS_00017928 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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