TCONS_00017905 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017905
Unique NameTCONS_00017905
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017905 ID=TCONS_00017905|Name=TCONS_00017905|organism=Clytia hemisphaerica|type=transcript|length=1379bp
GTTTTCCGttgttttctatggaaaatgATTCTAGATaatgaattcaaaat
ataaTATGGCAagtataaagaaaagaaaatcagaaGTTAATAATGCTGAA
CCAGCCAGTAAAAAACCAAAGCAATCTTGGaaagatttTAAATTGTCTGC
ATCGGATATGGCAATTCTTCATGATCCAAGTAATCCTACAGCTGATTTTT
GGCCAACACGAGAAAAGACAATCACATTAGAAGAAGCAAAGCTTGGAACT
GATGTGCCTGTTCGTGTTTATGCTGATGGAATATATGACATGTTTCATGC
TGGTCACGCGAATTCATTACGTCAAGCCAAAAGTCTTTTTCCAAATACTT
ATCTTGTTGTAGGGTcctgCAGTGACCAAATGACTCACAAATTGAAAGGT
TTCACAGTGATGACAGATGAGGAACGTTATGAGATGATCCGTCACTGTAG
ATATGTGGACGAACTCATTACTGATGCACCATGGACTATTACACAAGAGT
TCTTAGATAAACACAAGaTTGACTTTGTGGCACATGATGATTTGCCATAT
AATTCTGCTGGTCAAGAAGACATCTACAAATTTGTTAAAGAAGCTGGTCA
ATTTGCAGCTACTGAGAGGACACCTGGTATTTCAACGTCAGATATCATCA
CAAGAATTGTACGTGATTACGATATGTATGTTCAAAGAAATCTTCAACGT
GGCTATTCAAGACAAGATTTGAATGTTGGATTTATTAAGGAAAAAGAAAT
CGTTGTCAAggagaaatataagaaaatcaAAGATCGTTCTCAAGAGTTGA
TCACAAATTGGGAAGATAAATCAAGAGAAGCTATCATGGGTTTCATTGAA
ATGTTTGGACCTGATAGTATGATgACTGGTTTATGGGAACGAGGGAAGAA
CAGGCTATCAGTAACCAGCAGAAGAATCCGAGAAGCTATTTCACCACCGC
GGTCACCTATGGGTGGAGAGGGGACATCTTATGATGGACACATCAGTAGT
GACGATGAGGATCAAAGTGATATTCCAAATGGAAGCATTGAAACCTATAA
TAATCTTGATGGGCTTAGTGATACTGAAAAATGAGAAACTGGAAGAATGA
TGTGACTAGTGTTGAACATCATTGAGAAAATGATTGTAAAAGGGAAGAAA
AGTTAATGGTAAGATTCTGGTCTTCAGTCGTCATAAAATGTTACCCTTTC
GTGATttatttgtcaaataaaagCTTGTTATTTCATCGGGGTGGCTGTTC
TacagtaagaatatttttatagaaTTAGGAAATCTTTTCggtattttttg
gcatttttcatacttaaaaaaagtaattctataattttgattcaccaaag
gtttttcttcaatttttaattgcttttaa
Run BLAST on NCBI

protein sequence of TCONS_00017905-protein

>TCONS_00017905-protein ID=TCONS_00017905-protein|Name=TCONS_00017905-protein|organism=Clytia hemisphaerica|type=polypeptide|length=348bp
MNSKYNMASIKKRKSEVNNAEPASKKPKQSWKDFKLSASDMAILHDPSNP
TADFWPTREKTITLEEAKLGTDVPVRVYADGIYDMFHAGHANSLRQAKSL
FPNTYLVVGSCSDQMTHKLKGFTVMTDEERYEMIRHCRYVDELITDAPWT
ITQEFLDKHKIDFVAHDDLPYNSAGQEDIYKFVKEAGQFAATERTPGIST
SDIITRIVRDYDMYVQRNLQRGYSRQDLNVGFIKEKEIVVKEKYKKIKDR
SQELITNWEDKSREAIMGFIEMFGPDSMMTGLWERGKNRLSVTSRRIREA
ISPPRSPMGGEGTSYDGHISSDDEDQSDIPNGSIETYNNLDGLSDTEK
Run BLAST on NCBI

transcript from alignment at sc0000279:72103..78977+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017905 ID=TCONS_00017905|Name=TCONS_00017905|organism=Clytia hemisphaerica|type=transcript|length=6875bp|location=Sequence derived from alignment at sc0000279:72103..78977+ (Clytia hemisphaerica)
GTTTTCCGttgttttctatggaaaatggtaagaaacttaggtttacaagt
gtcatttagtttttgctagCTGTAAGAATGGCCGGATCCTGGATGGCTTC
CCTAACTGCTGAGTTGgtattgtgtattttacagagcCCACCTAAAGTTG
CCCATTTTGCCTAAATCACCCTTAGGACAGTGTAAGTGGACCTCAATTTT
GCAGGATTACcattttacaagctttttaacaatttttgccTCGTTAACCC
AAATCCTGCAACCGCTTTACctgaaattagagtttttcctGCCTAAATTT
TTTCGTATTCACAGGACTCTACAGGACTCTATTCTTAAccacaaaataca
tcttttggtctatGGGTGTTTTCTAATGTTCTTCCTTCAAAGAAtgtggt
ctgtaaaatacaaaccaaagattttgcacactgtcTTGGATGGACAATAT
CTATCACTGGTGAAAATATCAAAAGCTCCAGTAGTTTCTAAGCTCTAGTA
GCAGGTGGTCAgcatgtattttacagactggtcTGCAAAGTACCAAATCT
CAcggtaaaaatgtttttctgttACTAACCTgttttatttgacaaatcag
cCTTCAGGAACAAATTTCAGGCAAATCAAATCAATCAGTCAATATATACA
TGGTTTTGGTCaagtttacattctggtctgtaaaatactaacCAGACATG
TGGCTGAACCACAATTTTGCAACTCATCTTCAATTATCACTATCTACCGC
TGattgaaatttcaaggtcaatAGCACTTTTTGTCACCCCCTTGCATTCC
AGATTCAAATTCACTTTAAATTTGTCGCTTTTTTAAAAAGGCAACAAAAA
TCTTTAGGTAAGGTATTTAAGATAATATGAAATGCCAGAGACTTGCATTC
CACATTCAATGgccatgttttgtttttgatttttttataccTTGAATTTT
TTCCCTTGTCACATCTTATGTGGGTCTGGGCACAAATCTGTGAAAGTCAT
AAATTAAAACCactgcttgaaaaaaaaattgaatatacaaACTGTTAGGG
GGAAGCAACTTTTCGGGCAGTGGAATATATCATCCTACAAAGAAGTTTTA
AATGGATAGTTTTATATACTCAATATATCTTTAAGATTCTAGATaatgaa
ttcaaaatataaTATGGCAagtataaagaaaagaaaatcagaaGTTAATA
ATGCTGAACCAGCCAGTAAAAAACCAAAGCAATCTTGGGTAAGTTTTTTC
TTGATCTACTGAACATAAAATTCACCATAAAAATGCGCAGAGGGTTTCAA
ACTCTCGCCCAACTATATTTTATCCCACTTAAATACATAGCCATTTCTTA
ACTTGTTAAATATTCTAGGACCAAAAGTGCATTTGaactctttttggacc
tacctccgggtgccccggtggaggtcctataaattaacccatgtccgttc
gttcgtccgttcgttcgtccgtccgtccgtctgttaccagNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttac
cattttacattattcaacacacaagctttatttttccattctgaattttt
gtacaattattgtcacttttttcttattttcatctaatgttaatcattag
gtaggtccattcagcatgttgcttgtttattttGCATTGCCTCTAAAAAC
TCAAACCCACATTTTATTTAGAAAACTCCAACCACTATAAAACCTAACCC
TAATATTAATAATGCGTTTCTTGAATATCTAGATCCCAATTGTGAATTGA
TTTGATGTATGACAGTAAACAATGTCAGTCTGCAAACAAATCATATAACA
GTTTTTCTTGACTAGGACTCCTTTAGAGAATTCTAGGTTGATAATTCTGC
TGATTCATAAATTTTCGAATTAAAGATAATTaatttatatatataatata
aacttGGGAATTCCGCGTCAAAATAAGGGGTCGGAAGCACATCACACTTC
TTCAGTAAGCGTGGTTCTTGCATCTTGAAATGgacaaattttcaatgttt
aGCTTGTAAATTATCAAAAAACACATAGTGAATTGCGAAATGTGATacgc
taattcgatccctgaaggtgttttctgatttctacctctgtttatagaaa
gatttTAAATTGTCTGCATCGGATATGGCAATTCTTCATGATCCAAGTAA
TCCTACAGCTGATTTTTGGCCAACACGAGAAAAGACAATCACATTAGAAG
AAGCAAAGCTTGGAACTGATGGTAAAATCTTCTTAAAGATTTAATTTGCA
GGAATTAACTATGATGTCAACCTGCATATTGCTAAACTCTTAATATGAGT
GCCTCATAAAAGGAAAGAATTTCAATGGCTAGATAACCAAAAGAGCTTTA
AGGGGATTGCGTAGGCATCAGTATGTCTGGTAAAATTAGGATTGGTGGAA
ATTCTATTTGGCAGATGGGGAAGacaaattcacaaaattttctttttgaa
taaagTACCTTTTGTCAATCCAATCTTATCTCAATATAGAAAGTCGGTTC
TTCATGATAATTTATTTTCAGCTGCTTAAAATTTCTCGCTGAAACCTTTT
ATTTTTTAGTGCCTGTTCGTGTTTATGCTGATGGAATATATGACATGTTT
CATGCTGGTCACGCGAATTCATTACGTCAAGCCAAAAGTCTTTTTCCAAA
TACTTATCTTGTTGTAGGGTGTATGTAGACTTTTATTTCCTttactttga
aatttcgaaCATACGATCAAAAGCTTTCCATATTATCAACCAAGAGGCTT
TGAAAGCATTTTATTCAATGTTTTTATGTGAGTTTTTCTTGGAGCAATTT
GGCAATTACTGTAAGTTTCTTGAAATAATTGTGAAACCTGACACTATATC
CCTCttggttcttatttttttagcctgCAGTGACCAAATGACTCACAAAT
TGAAAGGTTTCACAGTGATGACAGATGAGGAACGTTATGAGATGATCCGT
CACTGTAGATATGTGGACGAACTCATTACTGATGCACCATGGACTATTAC
ACAAGAGTTCTTAGATAAACACAAGGTCTGATTTGCCTGTCAGTCGAAAT
TTTGTGGCAGGAACAGGCATGAAATACCCTTGAAATGATAACTAACAAAT
TTTAATTCGCACTTTTTTTACAGACCACAATATTTTCAGATGTGCCCCTG
CGGTCACCAGTTATAAATTTGTTATTAGAAATTTCTATGTATCATCCTTA
TTGAATAActtatggaaattttttagaTTGACTTTGTGGCACATGATGAT
TTGCCATATAATTCTGCTGGTCAAGAAGACATCTACAAATTTGTTAAAGA
AGCTGGTCAATTTGCAGCTACTGAGAGGACACCTGGTATTTCAACGTCAG
ATATCATCACAAGAATTGTACGTGATTACGATATGTATGTTCAAAGAAAT
CTTCAACGTGGCTATTCAAGACAAGATTTGAATGTTGGATTTATTAAGGT
ATTATACTTTTCTAGCTCTACCAAAGCTCCCCAACATATATTATAGAACC
TACCATTGTAGGCTGTGTTTGTACTTTAGAGAAACGGTTAATGATAATCT
GACAAAGTGCTTGATATTTACTGCTTAAGGAAGAATAAATATTTTCCATC
ACTAAAGTatccaaatttcttttttaaacaaCTTATCTGCTCTATTTAAC
CTTATTAAAAGTACATGACAGTACAtaacaaatctcttttttctTGTACA
TTTTGAACAAGTGTAGCAGCACGAAACTTTAAAGTTCTGtacttttatag
aaaaaaaactttctttttttaattttatttataacCTTAGGAAAAAGAAA
TCGTTGTCAAggagaaatataagaaaatcaAAGATCGTTCTCAAGAGTTG
ATCACAAATTGGGAAGATAAATCAAGAGAAGCTATCATGGGTTTCATTGA
AATGTTTGGACCTGATAGTATGATggtatgaaaatttctttgttcttatt
tcAATCTTTGATTGAGGGCTTTTTTGCTTTATTGGTCGCttcttgaaaat
aatatttcatatttGTAGTAGTACCAAACTATACTGTGTGGTTATGAATC
CCCTAGGTAACAAATAATGGAGCCCCAGATACATATATCAACAAaaatta
ggaattttttttatttagatagGTCGTAGAACTGTTGATTTTCTTTCACT
AATTATaagattttgtttctttttttacagACTGGTTTATGGGAACGAGG
GAAGAACAGGCTATCAGTAACCAGCAGAAGAATCCGAGAAGCTATTTCAC
CACCGCGGTCACCTATGGGTGGAGAGGGGACATCTTATGATGGACACATC
AGTAGTGACGATGAGGATCAAAGTGATATTCCAAATGGAAGCATTGAAAC
CTATAATAATCTTGATGGGCTTAGTGATACTGAAAAATGAGAAAGTAATA
TTTTTATACATCATTATTGTTCAAAGTTTTTTACTTAGTAATGGTGTATT
TACCAATGACACAAAAGGAAAGActttttacaaacttttttaaCTTGCAC
GGTTTGTGATGGTTGGTGATGTAGATGTCGTTGTAGATTCAAAGATTTGA
TTTTTGGatctacctggaggtcctataaataaccgtcgttcgttcgttcg
ttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgtt
cgttcgttcgttcgttcgttcgttcggttTTCAGGATCTTTTCCATTAAT
GTCTAATGTTCTCTCATTTGGCTAACTTTCATTATCAAGTAGGTCCAATC
AGCAGCATCCAGCTTGTTTAACTAGTTTTGATATGAATTATTCCACCGAC
CATTTAATGATGTGATTATTGAttgtgaaaataattttcatcacTCGCAT
TGACTAAGTAATGTAATGTGACTTCTTTTTCTAGCTGGAAGAATGATGTG
ACTAGTGTTGAACATCATTGAGAAAATGATTGTAAAAGGGAAGAAAAGTT
AATGGTAAGATTCTGGTCTTCAGTCGTCATAAAATGTTACCCTTTCGTGA
TttatttgtcaaataaaagCTTGTTATTTCATCGGGGTGGCTGTTCTaca
gtaagaatatttttatagaaTTAGGAAATCTTTTCggtattttttggcat
ttttcatacttaaaaaaagtaattctataattttgattcaccaaaggttt
ttcttcaatttttaattgcttttaa

Coding sequence (CDS) from alignment at sc0000279:72103..78977+

>TCONS_00017905 ID=TCONS_00017905|Name=TCONS_00017905|organism=Clytia hemisphaerica|type=CDS|length=7329bp|location=Sequence derived from alignment at sc0000279:72103..78977+ (Clytia hemisphaerica)
atgaattcaaaatataaTATGGCAagtataaagaaaagaaaatcagaaGT
TAATAATGCTGAACCAGCCAGTAAAAAACCAAAGCAATCTTGGaaagatt
tTAAATTGTCTGCATCGGATATGGCAATTCTTCATGATCCAAGTAATCCT
ACAGCTGATTTTTGGCCAACACGAGAAAAGACAATCACATTAGAAGAAGC
AAAGCTTGGAACTGATGTGCCTGTTCGTGTTTATGCTGATGGAATATATG
ACATGTTTCATGCTGGTCACGCGAATTCATTACGTCAAGCCAAAAGTCTT
TTTCCAAATACTTATCTTGTTGTAGGGTcctgCAGTGACCAAATGACTCA
CAAATTGAAAGGTTTCACAGTGATGACAGATGAGGAACGTTATGAGATGA
TCCGTCACTGTAGATATGTGGACGAACTCATTACTGATGCACCATGGACT
ATTACACAAGAGTTCTTAGATAAACACAAGaTTGACTTTGTGGCACATGA
TGATTTGCCATATAATTCTGCTGGTCAAGAAGACATCTACAAATTTGTTA
AAGAAGCTGGTCAATTTGCAGCTACTGAGAGGACACCTGGTATTTCAACG
TCAGATATCATCACAAGAATTGTACGTGATTACGATATGTATGTTCAAAG
AAATCTTCAACGTGGCTATTCAAGACAAGATTTGAATGTTGGATTTATTA
AGGAAAAAGAAATCGTTGTCAAggagaaatataagaaaatcaAAGATCGT
TCTCAAGAGTTGATCACAAATTGGGAAGATAAATCAAGAGAAGCTATCAT
GGGTTTCATTGAAATGTTTGGACCTGATAGTATGATgACTGGTTTATGGG
AACGAGGGAAGAACAGGCTATCAGTAACCAGCAGAAGAATCCGAGAAGCT
ATTTCACCACCGCGGTCACCTATGGGTGGAGAGGGGACATCTTATGATGG
ACACATCAGTAGTGACGATGAGGATCAAAGTGATATTCCAAATGGAAGCA
TTGAAACCTATAATAATCTTGATGGGCTTAGTGATACTGAAAAATGAatg
aattcaaaatataaTATGGCAagtataaagaaaagaaaatcagaaGTTAA
TAATGCTGAACCAGCCAGTAAAAAACCAAAGCAATCTTGGaaagatttTA
AATTGTCTGCATCGGATATGGCAATTCTTCATGATCCAAGTAATCCTACA
GCTGATTTTTGGCCAACACGAGAAAAGACAATCACATTAGAAGAAGCAAA
GCTTGGAACTGATGTGCCTGTTCGTGTTTATGCTGATGGAATATATGACA
TGTTTCATGCTGGTCACGCGAATTCATTACGTCAAGCCAAAAGTCTTTTT
CCAAATACTTATCTTGTTGTAGGGTcctgCAGTGACCAAATGACTCACAA
ATTGAAAGGTTTCACAGTGATGACAGATGAGGAACGTTATGAGATGATCC
GTCACTGTAGATATGTGGACGAACTCATTACTGATGCACCATGGACTATT
ACACAAGAGTTCTTAGATAAACACAAGaTTGACTTTGTGGCACATGATGA
TTTGCCATATAATTCTGCTGGTCAAGAAGACATCTACAAATTTGTTAAAG
AAGCTGGTCAATTTGCAGCTACTGAGAGGACACCTGGTATTTCAACGTCA
GATATCATCACAAGAATTGTACGTGATTACGATATGTATGTTCAAAGAAA
TCTTCAACGTGGCTATTCAAGACAAGATTTGAATGTTGGATTTATTAAGG
AAAAAGAAATCGTTGTCAAggagaaatataagaaaatcaAAGATCGTTCT
CAAGAGTTGATCACAAATTGGGAAGATAAATCAAGAGAAGCTATCATGGG
TTTCATTGAAATGTTTGGACCTGATAGTATGATgACTGGTTTATGGGAAC
GAGGGAAGAACAGGCTATCAGTAACCAGCAGAAGAATCCGAGAAGCTATT
TCACCACCGCGGTCACCTATGGGTGGAGAGGGGACATCTTATGATGGACA
CATCAGTAGTGACGATGAGGATCAAAGTGATATTCCAAATGGAAGCATTG
AAACCTATAATAATCTTGATGGGCTTAGTGATACTGAAAAATGAatgaat
tcaaaatataaTATGGCAagtataaagaaaagaaaatcagaaGTTAATAA
TGCTGAACCAGCCAGTAAAAAACCAAAGCAATCTTGGaaagatttTAAAT
TGTCTGCATCGGATATGGCAATTCTTCATGATCCAAGTAATCCTACAGCT
GATTTTTGGCCAACACGAGAAAAGACAATCACATTAGAAGAAGCAAAGCT
TGGAACTGATGTGCCTGTTCGTGTTTATGCTGATGGAATATATGACATGT
TTCATGCTGGTCACGCGAATTCATTACGTCAAGCCAAAAGTCTTTTTCCA
AATACTTATCTTGTTGTAGGGTcctgCAGTGACCAAATGACTCACAAATT
GAAAGGTTTCACAGTGATGACAGATGAGGAACGTTATGAGATGATCCGTC
ACTGTAGATATGTGGACGAACTCATTACTGATGCACCATGGACTATTACA
CAAGAGTTCTTAGATAAACACAAGaTTGACTTTGTGGCACATGATGATTT
GCCATATAATTCTGCTGGTCAAGAAGACATCTACAAATTTGTTAAAGAAG
CTGGTCAATTTGCAGCTACTGAGAGGACACCTGGTATTTCAACGTCAGAT
ATCATCACAAGAATTGTACGTGATTACGATATGTATGTTCAAAGAAATCT
TCAACGTGGCTATTCAAGACAAGATTTGAATGTTGGATTTATTAAGGAAA
AAGAAATCGTTGTCAAggagaaatataagaaaatcaAAGATCGTTCTCAA
GAGTTGATCACAAATTGGGAAGATAAATCAAGAGAAGCTATCATGGGTTT
CATTGAAATGTTTGGACCTGATAGTATGATgACTGGTTTATGGGAACGAG
GGAAGAACAGGCTATCAGTAACCAGCAGAAGAATCCGAGAAGCTATTTCA
CCACCGCGGTCACCTATGGGTGGAGAGGGGACATCTTATGATGGACACAT
CAGTAGTGACGATGAGGATCAAAGTGATATTCCAAATGGAAGCATTGAAA
CCTATAATAATCTTGATGGGCTTAGTGATACTGAAAAATGAatgaattca
aaatataaTATGGCAagtataaagaaaagaaaatcagaaGTTAATAATGC
TGAACCAGCCAGTAAAAAACCAAAGCAATCTTGGaaagatttTAAATTGT
CTGCATCGGATATGGCAATTCTTCATGATCCAAGTAATCCTACAGCTGAT
TTTTGGCCAACACGAGAAAAGACAATCACATTAGAAGAAGCAAAGCTTGG
AACTGATGTGCCTGTTCGTGTTTATGCTGATGGAATATATGACATGTTTC
ATGCTGGTCACGCGAATTCATTACGTCAAGCCAAAAGTCTTTTTCCAAAT
ACTTATCTTGTTGTAGGGTcctgCAGTGACCAAATGACTCACAAATTGAA
AGGTTTCACAGTGATGACAGATGAGGAACGTTATGAGATGATCCGTCACT
GTAGATATGTGGACGAACTCATTACTGATGCACCATGGACTATTACACAA
GAGTTCTTAGATAAACACAAGaTTGACTTTGTGGCACATGATGATTTGCC
ATATAATTCTGCTGGTCAAGAAGACATCTACAAATTTGTTAAAGAAGCTG
GTCAATTTGCAGCTACTGAGAGGACACCTGGTATTTCAACGTCAGATATC
ATCACAAGAATTGTACGTGATTACGATATGTATGTTCAAAGAAATCTTCA
ACGTGGCTATTCAAGACAAGATTTGAATGTTGGATTTATTAAGGAAAAAG
AAATCGTTGTCAAggagaaatataagaaaatcaAAGATCGTTCTCAAGAG
TTGATCACAAATTGGGAAGATAAATCAAGAGAAGCTATCATGGGTTTCAT
TGAAATGTTTGGACCTGATAGTATGATgACTGGTTTATGGGAACGAGGGA
AGAACAGGCTATCAGTAACCAGCAGAAGAATCCGAGAAGCTATTTCACCA
CCGCGGTCACCTATGGGTGGAGAGGGGACATCTTATGATGGACACATCAG
TAGTGACGATGAGGATCAAAGTGATATTCCAAATGGAAGCATTGAAACCT
ATAATAATCTTGATGGGCTTAGTGATACTGAAAAATGAatgaattcaaaa
tataaTATGGCAagtataaagaaaagaaaatcagaaGTTAATAATGCTGA
ACCAGCCAGTAAAAAACCAAAGCAATCTTGGaaagatttTAAATTGTCTG
CATCGGATATGGCAATTCTTCATGATCCAAGTAATCCTACAGCTGATTTT
TGGCCAACACGAGAAAAGACAATCACATTAGAAGAAGCAAAGCTTGGAAC
TGATGTGCCTGTTCGTGTTTATGCTGATGGAATATATGACATGTTTCATG
CTGGTCACGCGAATTCATTACGTCAAGCCAAAAGTCTTTTTCCAAATACT
TATCTTGTTGTAGGGTcctgCAGTGACCAAATGACTCACAAATTGAAAGG
TTTCACAGTGATGACAGATGAGGAACGTTATGAGATGATCCGTCACTGTA
GATATGTGGACGAACTCATTACTGATGCACCATGGACTATTACACAAGAG
TTCTTAGATAAACACAAGaTTGACTTTGTGGCACATGATGATTTGCCATA
TAATTCTGCTGGTCAAGAAGACATCTACAAATTTGTTAAAGAAGCTGGTC
AATTTGCAGCTACTGAGAGGACACCTGGTATTTCAACGTCAGATATCATC
ACAAGAATTGTACGTGATTACGATATGTATGTTCAAAGAAATCTTCAACG
TGGCTATTCAAGACAAGATTTGAATGTTGGATTTATTAAGGAAAAAGAAA
TCGTTGTCAAggagaaatataagaaaatcaAAGATCGTTCTCAAGAGTTG
ATCACAAATTGGGAAGATAAATCAAGAGAAGCTATCATGGGTTTCATTGA
AATGTTTGGACCTGATAGTATGATgACTGGTTTATGGGAACGAGGGAAGA
ACAGGCTATCAGTAACCAGCAGAAGAATCCGAGAAGCTATTTCACCACCG
CGGTCACCTATGGGTGGAGAGGGGACATCTTATGATGGACACATCAGTAG
TGACGATGAGGATCAAAGTGATATTCCAAATGGAAGCATTGAAACCTATA
ATAATCTTGATGGGCTTAGTGATACTGAAAAATGAatgaattcaaaatat
aaTATGGCAagtataaagaaaagaaaatcagaaGTTAATAATGCTGAACC
AGCCAGTAAAAAACCAAAGCAATCTTGGaaagatttTAAATTGTCTGCAT
CGGATATGGCAATTCTTCATGATCCAAGTAATCCTACAGCTGATTTTTGG
CCAACACGAGAAAAGACAATCACATTAGAAGAAGCAAAGCTTGGAACTGA
TGTGCCTGTTCGTGTTTATGCTGATGGAATATATGACATGTTTCATGCTG
GTCACGCGAATTCATTACGTCAAGCCAAAAGTCTTTTTCCAAATACTTAT
CTTGTTGTAGGGTcctgCAGTGACCAAATGACTCACAAATTGAAAGGTTT
CACAGTGATGACAGATGAGGAACGTTATGAGATGATCCGTCACTGTAGAT
ATGTGGACGAACTCATTACTGATGCACCATGGACTATTACACAAGAGTTC
TTAGATAAACACAAGaTTGACTTTGTGGCACATGATGATTTGCCATATAA
TTCTGCTGGTCAAGAAGACATCTACAAATTTGTTAAAGAAGCTGGTCAAT
TTGCAGCTACTGAGAGGACACCTGGTATTTCAACGTCAGATATCATCACA
AGAATTGTACGTGATTACGATATGTATGTTCAAAGAAATCTTCAACGTGG
CTATTCAAGACAAGATTTGAATGTTGGATTTATTAAGGAAAAAGAAATCG
TTGTCAAggagaaatataagaaaatcaAAGATCGTTCTCAAGAGTTGATC
ACAAATTGGGAAGATAAATCAAGAGAAGCTATCATGGGTTTCATTGAAAT
GTTTGGACCTGATAGTATGATgACTGGTTTATGGGAACGAGGGAAGAACA
GGCTATCAGTAACCAGCAGAAGAATCCGAGAAGCTATTTCACCACCGCGG
TCACCTATGGGTGGAGAGGGGACATCTTATGATGGACACATCAGTAGTGA
CGATGAGGATCAAAGTGATATTCCAAATGGAAGCATTGAAACCTATAATA
ATCTTGATGGGCTTAGTGATACTGAAAAATGAatgaattcaaaatataaT
ATGGCAagtataaagaaaagaaaatcagaaGTTAATAATGCTGAACCAGC
CAGTAAAAAACCAAAGCAATCTTGGaaagatttTAAATTGTCTGCATCGG
ATATGGCAATTCTTCATGATCCAAGTAATCCTACAGCTGATTTTTGGCCA
ACACGAGAAAAGACAATCACATTAGAAGAAGCAAAGCTTGGAACTGATGT
GCCTGTTCGTGTTTATGCTGATGGAATATATGACATGTTTCATGCTGGTC
ACGCGAATTCATTACGTCAAGCCAAAAGTCTTTTTCCAAATACTTATCTT
GTTGTAGGGTcctgCAGTGACCAAATGACTCACAAATTGAAAGGTTTCAC
AGTGATGACAGATGAGGAACGTTATGAGATGATCCGTCACTGTAGATATG
TGGACGAACTCATTACTGATGCACCATGGACTATTACACAAGAGTTCTTA
GATAAACACAAGaTTGACTTTGTGGCACATGATGATTTGCCATATAATTC
TGCTGGTCAAGAAGACATCTACAAATTTGTTAAAGAAGCTGGTCAATTTG
CAGCTACTGAGAGGACACCTGGTATTTCAACGTCAGATATCATCACAAGA
ATTGTACGTGATTACGATATGTATGTTCAAAGAAATCTTCAACGTGGCTA
TTCAAGACAAGATTTGAATGTTGGATTTATTAAGGAAAAAGAAATCGTTG
TCAAggagaaatataagaaaatcaAAGATCGTTCTCAAGAGTTGATCACA
AATTGGGAAGATAAATCAAGAGAAGCTATCATGGGTTTCATTGAAATGTT
TGGACCTGATAGTATGATgACTGGTTTATGGGAACGAGGGAAGAACAGGC
TATCAGTAACCAGCAGAAGAATCCGAGAAGCTATTTCACCACCGCGGTCA
CCTATGGGTGGAGAGGGGACATCTTATGATGGACACATCAGTAGTGACGA
TGAGGATCAAAGTGATATTCCAAATGGAAGCATTGAAACCTATAATAATC
TTGATGGGCTTAGTGATACTGAAAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010039XLOC_010039Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017905-proteinTCONS_00017905-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017905-exon-sc0000279-1491911889:72103..72129TCONS_00017905-exon-sc0000279-1491911889:72103..72129Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1510915933:72103..72129TCONS_00017905-exon-sc0000279-1510915933:72103..72129Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1575043694:72103..72129TCONS_00017905-exon-sc0000279-1575043694:72103..72129Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1491911889:73238..73340TCONS_00017905-exon-sc0000279-1491911889:73238..73340Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1510915933:73238..73340TCONS_00017905-exon-sc0000279-1510915933:73238..73340Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1575043694:73238..73340TCONS_00017905-exon-sc0000279-1575043694:73238..73340Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1491911889:75900..76023TCONS_00017905-exon-sc0000279-1491911889:75900..76023Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1510915933:75900..76023TCONS_00017905-exon-sc0000279-1510915933:75900..76023Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1575043694:75900..76023TCONS_00017905-exon-sc0000279-1575043694:75900..76023Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1491911889:76362..76472TCONS_00017905-exon-sc0000279-1491911889:76362..76472Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1510915933:76362..76472TCONS_00017905-exon-sc0000279-1510915933:76362..76472Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1575043694:76362..76472TCONS_00017905-exon-sc0000279-1575043694:76362..76472Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1491911889:76676..76827TCONS_00017905-exon-sc0000279-1491911889:76676..76827Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1510915933:76676..76827TCONS_00017905-exon-sc0000279-1510915933:76676..76827Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1575043694:76676..76827TCONS_00017905-exon-sc0000279-1575043694:76676..76827Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1491911889:77029..77250TCONS_00017905-exon-sc0000279-1491911889:77029..77250Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1510915933:77029..77250TCONS_00017905-exon-sc0000279-1510915933:77029..77250Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1575043694:77029..77250TCONS_00017905-exon-sc0000279-1575043694:77029..77250Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1491911889:77593..77727TCONS_00017905-exon-sc0000279-1491911889:77593..77727Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1510915933:77593..77727TCONS_00017905-exon-sc0000279-1510915933:77593..77727Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1575043694:77593..77727TCONS_00017905-exon-sc0000279-1575043694:77593..77727Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1491911889:77983..78196TCONS_00017905-exon-sc0000279-1491911889:77983..78196Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1510915933:77983..78196TCONS_00017905-exon-sc0000279-1510915933:77983..78196Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1575043694:77983..78196TCONS_00017905-exon-sc0000279-1575043694:77983..78196Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1491911889:78687..78977TCONS_00017905-exon-sc0000279-1491911889:78687..78977Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1510915933:78687..78977TCONS_00017905-exon-sc0000279-1510915933:78687..78977Clytia hemisphaericaexon
TCONS_00017905-exon-sc0000279-1575043694:78687..78977TCONS_00017905-exon-sc0000279-1575043694:78687..78977Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000279supercontigsc0000279:72103..78977 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.09359	6.65315	7.67104	6.04441	57.4032	43.8168	47.0543	52.0814	13.7983	22.7903	16.5894	14.5404	17.2429	5.65472	15.4968	8.31505	37.8848	27.3017	18.6383	12.143	42.7285	17.3748	39.1161	31.2927	37.7327	32.8822	24.3235	15.9746	42.4066	43.2111
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004821Cyt_trans-like
IPR014729Rossmann-like_a/b/a_fold
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009058 biosynthetic process
molecular_function GO:0003824 catalytic activity
Blast
[Close]
BLAST of TCONS_00017905 vs. Swiss-Prot (Human)
Match: PCY1B (Choline-phosphate cytidylyltransferase B OS=Homo sapiens GN=PCYT1B PE=1 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 1.888e-98
Identity = 152/267 (56.93%), Postives = 195/267 (73.03%), Query Frame = 2 
Query:  221 ITLEEAKLGT--DVPVRVYADGIYDMFHAGHANSLRQAKSLFPNTYLVVGSCSDQMTHKLKGFTVMTDEERYEMIRHCRYVDELITDAPWTITQEFLDKHKIDFVAHDDLPYNSAGQEDIYKFVKEAGQFAATERTPGISTSDIITRIVRDYDMYVQRNLQRGYSRQDLNVGF------------------XXXXXXXXXXXXXXXXDRSQELITNWEDKSREAIMGFIEMFGPDSMMTGLWERGKNRLSVTSRRIREAISPPRSPM 961
            +T+ +A+LGT  D PVRVYADGI+D+FH+GHA +L QAK+LFPN+YL+VG CSD +THK KGFTVM + ERYE +RHCRYVDE+I DAPWT+T EFL+KHKIDFVAHDD+PY+SAG +D+YK +KEAG F  T+RT GISTSDIITRIVRDYD+Y +RNLQRGY+ ++LNV F                  +K  E   KE   +++++S +LI  WE+KSRE I  F+E+FGPD    G W   K      S R+ +A+SP +SP+
Sbjct:   62 LTIAQARLGTPADRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGPD----GAW---KQMFQERSSRMLQALSPKQSPV 321
The following BLAST results are available for this feature:
BLAST of TCONS_00017905 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCY1B1.888e-9856.93Choline-phosphate cytidylyltransferase B OS=Homo s... [more]
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