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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017898 ID=TCONS_00017898|Name=TCONS_00017898|organism=Clytia hemisphaerica|type=transcript|length=3064bp attaattttattaCCGTAAAATGCAATTAACCTTTTTATTAAATAAAGAT TGTATTTGTCAATATTGTTAACCataaaaagaatagaaaaaataaaatgc ttCAATACATAGGTAGCGtaacaaaaaattattgaaataaaaaacaccTG TTAACCCAGAGCAAAAAGAAAACTTCACAGCCGAATGAAACAATGAAACT TTTACGCCAAAATTATGAAATACTTATGGTTGCAATTTTTAAGAAAGCGA CAAATTTGGATGTTATCACCATCTTCAGTTCAAGCTTATATTTACTATAA CATCGCGTAGGTTGTTGAtgggtgaaataaaaaaaaacctgaACGTCATT ACTAAAACACGCAGTTTAAATAAATTGAACAATTAAAATTTATATTACAT AACATCTAAGTAGAATAATGCTAAACTATTTATCCTCGTCTCGAAAGGGG CCATCCACATAGTATGTACGCAGTGAAAGGgttagcaaaagcgtacgtct attgtttaaatgatctcttttctattgttctctgtgtACAAGGGGGGAGA GAGGTAtccaagatttggaaaaattttgcgtacgtactatatgggtGACC CTAAAACTAAACACCTTTTAGGTGGCttgatcaaaataatttctaaaAAA CACGGTGCACGATCTAAGCGTTGATTAccagaaaaaaaagattaaacctT TAGCTTATTTGCCCAAAAATTCGTTCATAAAGATAATTCTTCGAATACTT TATCATATTTTATTCCTTTTTCACTTGTATCAATATTGCTGTAAAGTATT TTATAAATAACTAGATATTCCTTTAATAAACATTTTAGTCCTATGCATCA TCAAATATATTTCTTGGAACTTTTGGTCGATTTGACCCAGTAATATTTTC ATAACCTGAAGCTGTAGTTTGTTCAGGTTTATAACCGATATCGACTCGGG CATCATTCTCAAATTGAGTGTActttgttttgttattttgattcaatttc GATTTTGGTGTTTTAGAAGGATTTATAAGGGAATCATCATCTGAGTCGTC AATTCGAGAATCAGGTCTTGTACCTCTTGCACTTGAAGAACTACCAATCG GTCGCTGTGTATATTTTTCCTGGATTTTCTTCGATCTTGTACTCCAATCA CCTCGACCATTGATCTCTCTTTGGGCTTTACGTTTTTCTCTTCTCACAAT TTCCTTTCCTTCACGAACATAATCAGCTGAAAAATCATCTTCTGAAAGGA ATTGTTCGATTCCAATCAAATGCAAACAACGTTTTCCAAGGCTGAAGAAA GTGCAAATGCAAACTAAGAGCACAATCATCGGGTAGTAAACATTCAAGCC TTTTGCAACAAATGATAACAGATCCATGTGTCCcataaattttgtgaatt gTGTTTCAATGACTGTTTTTACTCCCTGTGAATGTTCATTTGTTCCAGTA ACATGACCATCAAGATGAATCATGGCTAAGAAATTCAAACACAACGCATA TGTAAGACGGCAAAGAAGTAAGCCACTGAACATGAGACTGTTGGCATCAG TTTGATGGTGTGGTGCGAAAtaataaaagttgaaaatctttattttgaag acgGTATAATAGGTGCATGCACACATGTATGCAATTGTGAGGCAAGATAC AACTTCTATATCAAAGTAACGATAGCTTTTTCCAGATGTTTCGATTAACC AGGCGAACATAGATAAAGTTGGATCAACActgaaaaatgttgtttcagac cAAACAAGCAAAGCACTGAAAACAATTAAAGCTAAACATAATAGCTTGAA GAAAATAGGTTTCAACTGGATTTCCCAAAACCAGTGTAACTGAAGCTTTA CTCGACTTGTGGTGTAATGGTCTGaaaaagaacttttaaaaatcctTTCT GGGTTTGTCCTGTTGGTCTCTACATCTTCCAAATAGAAGgctaattttaa tttattgttcCATTGGACTTGCGTTCTGTGAGCATTGTGAGTTGTGACAA TAACTTTTTTATGTAACTTCATCAAGTTTTTGAGAGACAAACCTGTTCCC CCTCCAGTTGAATAGTCAACAAAATCATCGGTTCCTTTACTGAACAAATC ATTGCTCCCTTCTGGACATTTGTCAATTATTGTATCAATATACTTCCTGT TGTTTGCATTATACCTGATCTCTTCTGAAGCTTTTCGCACTTCTGTTAAA ACATCTGCTAGCTCATCGTCAGCATCTTCCTTTTCAGTACTCAATTTTGA CAAACGGAAATAAATCTGTTCCAACCTCAATTTAGGTTTTGACATATTCC AAGCATTACGTGGAAGCTCCACTAACCCATAACCCATTAGAAAGACAAGC AGCAATAGTCCCCATGTATTAGATGCTGTAATACCAataagtttcaaatt ttcagcattTAGTGTCAATTCAGGTTTTACAGCAACATAGATCAATAAAG CTCCAAAAATAAGAAGATAGCTTCCATACCACAAAGCATTTTCATAAagg gcagttttgatttttccccaTATAGTGAAATCTCCAGCATAAACATAAGA TTGCATTATAGGAAGTAAAAGCCATGATAGAATTTGAGATGACCAGTACA CTATTCTCCACAGGTCAGGAAGAAAGTATGATGGCATATGGCTCCAAGGC ACCACACAACCACTATGGGTGTCATTCGAATTATTCAAGCCTTTGAAATG TTCTTCACATTCAAGGTAGTAAGTGTTTGAAACGTCCAAAGGGAGTATAA AAATGATTAGAATTGAAAAAAACCATGAAGTGAAAACAGCCAAAGAAACC AGGAAATGCTGCTTTCTTAGGTTTCCATATTGATGAAGTATTATAAGAGT AGCTATAAATACTACTACAAACTCTACTGCAAATGGTCCAACCGACATTA TGACTGTTGATGTTGATGTTGTCAAAGGAGTCAACCTCGGCGTTGTGTGT CTGTTGTCTGTCAGTCAGATATCTCCGTTCTGAACTTCAACAAAAATCTG CCGCTGTTcaagtccgccattatggattacaatgtttttatttttggtga CGTAAACATTCGAA Run BLAST on NCBI protein sequence of TCONS_00017898-protein >TCONS_00017898-protein ID=TCONS_00017898-protein|Name=TCONS_00017898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=685bp
MSVGPFAVEFVVVFIATLIILHQYGNLRKQHFLVSLAVFTSWFFSILIIF ILPLDVSNTYYLECEEHFKGLNNSNDTHSGCVVPWSHMPSYFLPDLWRIV YWSSQILSWLLLPIMQSYVYAGDFTIWGKIKTALYENALWYGSYLLIFGA LLIYVAVKPELTLNAENLKLIGITASNTWGLLLLVFLMGYGLVELPRNAW NMSKPKLRLEQIYFRLSKLSTEKEDADDELADVLTEVRKASEEIRYNANN RKYIDTIIDKCPEGSNDLFSKGTDDFVDYSTGGGTGLSLKNLMKLHKKVI VTTHNAHRTQVQWNNKLKLAFYLEDVETNRTNPERIFKSSFSDHYTTSRV KLQLHWFWEIQLKPIFFKLLCLALIVFSALLVWSETTFFSVDPTLSMFAW LIETSGKSYRYFDIEVVSCLTIAYMCACTYYTVFKIKIFNFYYFAPHHQT DANSLMFSGLLLCRLTYALCLNFLAMIHLDGHVTGTNEHSQGVKTVIETQ FTKFMGHMDLLSFVAKGLNVYYPMIVLLVCICTFFSLGKRCLHLIGIEQF LSEDDFSADYVREGKEIVRREKRKAQREINGRGDWSTRSKKIQEKYTQRP IGSSSSARGTRPDSRIDDSDDDSLINPSKTPKSKLNQNNKTKYTQFENDA RVDIGYKPEQTTASGYENITGSNRPKVPRNIFDDA Run BLAST on NCBI transcript from alignment at sc0000278:347685..350748 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017898 ID=TCONS_00017898|Name=TCONS_00017898|organism=Clytia hemisphaerica|type=transcript|length=3064bp|location=Sequence derived from alignment at sc0000278:347685..350748 (Clytia hemisphaerica) TTCGAATGTTTACGtcaccaaaaataaaaacattgtaatccataatggcg
gacttgAACAGCGGCAGATTTTTGTTGAAGTTCAGAACGGAGATATCTGA
CTGACAGACAACAGACACACAACGCCGAGGTTGACTCCTTTGACAACATC
AACATCAACAGTCATAATGTCGGTTGGACCATTTGCAGTAGAGTTTGTAG
TAGTATTTATAGCTACTCTTATAATACTTCATCAATATGGAAACCTAAGA
AAGCAGCATTTCCTGGTTTCTTTGGCTGTTTTCACTTCATGGTTTTTTTC
AATTCTAATCATTTTTATACTCCCTTTGGACGTTTCAAACACTTACTACC
TTGAATGTGAAGAACATTTCAAAGGCTTGAATAATTCGAATGACACCCAT
AGTGGTTGTGTGGTGCCTTGGAGCCATATGCCATCATACTTTCTTCCTGA
CCTGTGGAGAATAGTGTACTGGTCATCTCAAATTCTATCATGGCTTTTAC
TTCCTATAATGCAATCTTATGTTTATGCTGGAGATTTCACTATAtgggga
aaaatcaaaactgccctTTATGAAAATGCTTTGTGGTATGGAAGCTATCT
TCTTATTTTTGGAGCTTTATTGATCTATGTTGCTGTAAAACCTGAATTGA
CACTAaatgctgaaaatttgaaacttatTGGTATTACAGCATCTAATACA
TGGGGACTATTGCTGCTTGTCTTTCTAATGGGTTATGGGTTAGTGGAGCT
TCCACGTAATGCTTGGAATATGTCAAAACCTAAATTGAGGTTGGAACAGA
TTTATTTCCGTTTGTCAAAATTGAGTACTGAAAAGGAAGATGCTGACGAT
GAGCTAGCAGATGTTTTAACAGAAGTGCGAAAAGCTTCAGAAGAGATCAG
GTATAATGCAAACAACAGGAAGTATATTGATACAATAATTGACAAATGTC
CAGAAGGGAGCAATGATTTGTTCAGTAAAGGAACCGATGATTTTGTTGAC
TATTCAACTGGAGGGGGAACAGGTTTGTCTCTCAAAAACTTGATGAAGTT
ACATAAAAAAGTTATTGTCACAACTCACAATGCTCACAGAACGCAAGTCC
AATGgaacaataaattaaaattagcCTTCTATTTGGAAGATGTAGAGACC
AACAGGACAAACCCAGAAaggatttttaaaagttctttttCAGACCATTA
CACCACAAGTCGAGTAAAGCTTCAGTTACACTGGTTTTGGGAAATCCAGT
TGAAACCTATTTTCTTCAAGCTATTATGTTTAGCTTTAATTGTTTTCAGT
GCTTTGCTTGTTTggtctgaaacaacatttttcagTGTTGATCCAACTTT
ATCTATGTTCGCCTGGTTAATCGAAACATCTGGAAAAAGCTATCGTTACT
TTGATATAGAAGTTGTATCTTGCCTCACAATTGCATACATGTGTGCATGC
ACCTATTATACcgtcttcaaaataaagattttcaacttttattaTTTCGC
ACCACACCATCAAACTGATGCCAACAGTCTCATGTTCAGTGGCTTACTTC
TTTGCCGTCTTACATATGCGTTGTGTTTGAATTTCTTAGCCATGATTCAT
CTTGATGGTCATGTTACTGGAACAAATGAACATTCACAGGGAGTAAAAAC
AGTCATTGAAACAcaattcacaaaatttatgGGACACATGGATCTGTTAT
CATTTGTTGCAAAAGGCTTGAATGTTTACTACCCGATGATTGTGCTCTTA
GTTTGCATTTGCACTTTCTTCAGCCTTGGAAAACGTTGTTTGCATTTGAT
TGGAATCGAACAATTCCTTTCAGAAGATGATTTTTCAGCTGATTATGTTC
GTGAAGGAAAGGAAATTGTGAGAAGAGAAAAACGTAAAGCCCAAAGAGAG
ATCAATGGTCGAGGTGATTGGAGTACAAGATCGAAGAAAATCCAGGAAAA
ATATACACAGCGACCGATTGGTAGTTCTTCAAGTGCAAGAGGTACAAGAC
CTGATTCTCGAATTGACGACTCAGATGATGATTCCCTTATAAATCCTTCT
AAAACACCAAAATCgaaattgaatcaaaataacaaaacaaagTACACTCA
ATTTGAGAATGATGCCCGAGTCGATATCGGTTATAAACCTGAACAAACTA
CAGCTTCAGGTTATGAAAATATTACTGGGTCAAATCGACCAAAAGTTCCA
AGAAATATATTTGATGATGCATAGGACTAAAATGTTTATTAAAGGAATAT
CTAGTTATTTATAAAATACTTTACAGCAATATTGATACAAGTGAAAAAGG
AATAAAATATGATAAAGTATTCGAAGAATTATCTTTATGAACGAATTTTT
GGGCAAATAAGCTAAaggtttaatcttttttttctggTAATCAACGCTTA
GATCGTGCACCGTGTTTtttagaaattattttgatcaaGCCACCTAAAAG
GTGTTTAGTTTTAGGGTCacccatatagtacgtacgcaaaatttttccaa
atcttggaTACCTCTCTCCCCCCTTGTacacagagaacaatagaaaagag
atcatttaaacaatagacgtacgcttttgctaacCCTTTCACTGCGTACA
TACTATGTGGATGGCCCCTTTCGAGACGAGGATAAATAGTTTAGCATTAT
TCTACTTAGATGTTATGTAATATAAATTTTAATTGTTCAATTTATTTAAA
CTGCGTGTTTTAGTAATGACGTtcaggtttttttttatttcacccaTCAA
CAACCTACGCGATGTTATAGTAAATATAAGCTTGAACTGAAGATGGTGAT
AACATCCAAATTTGTCGCTTTCTTAAAAATTGCAACCATAAGTATTTCAT
AATTTTGGCGTAAAAGTTTCATTGTTTCATTCGGCTGTGAAGTTTTCTTT
TTGCTCTGGGTTAACAggtgttttttatttcaataattttttgttaCGCT
ACCTATGTATTGaagcattttattttttctattctttttatGGTTAACAA
TATTGACAAATACAATCTTTATTTAATAAAAAGGTTAATTGCATTTTACG
Gtaataaaattaat Coding sequence (CDS) from alignment at sc0000278:347685..350748 >TCONS_00017898 ID=TCONS_00017898|Name=TCONS_00017898|organism=Clytia hemisphaerica|type=CDS|length=2058bp|location=Sequence derived from alignment at sc0000278:347685..350748 (Clytia hemisphaerica) ATGTCGGTTGGACCATTTGCAGTAGAGTTTGTAGTAGTATTTATAGCTAC TCTTATAATACTTCATCAATATGGAAACCTAAGAAAGCAGCATTTCCTGG TTTCTTTGGCTGTTTTCACTTCATGGTTTTTTTCAATTCTAATCATTTTT ATACTCCCTTTGGACGTTTCAAACACTTACTACCTTGAATGTGAAGAACA TTTCAAAGGCTTGAATAATTCGAATGACACCCATAGTGGTTGTGTGGTGC CTTGGAGCCATATGCCATCATACTTTCTTCCTGACCTGTGGAGAATAGTG TACTGGTCATCTCAAATTCTATCATGGCTTTTACTTCCTATAATGCAATC TTATGTTTATGCTGGAGATTTCACTATAtggggaaaaatcaaaactgccc tTTATGAAAATGCTTTGTGGTATGGAAGCTATCTTCTTATTTTTGGAGCT TTATTGATCTATGTTGCTGTAAAACCTGAATTGACACTAaatgctgaaaa tttgaaacttatTGGTATTACAGCATCTAATACATGGGGACTATTGCTGC TTGTCTTTCTAATGGGTTATGGGTTAGTGGAGCTTCCACGTAATGCTTGG AATATGTCAAAACCTAAATTGAGGTTGGAACAGATTTATTTCCGTTTGTC AAAATTGAGTACTGAAAAGGAAGATGCTGACGATGAGCTAGCAGATGTTT TAACAGAAGTGCGAAAAGCTTCAGAAGAGATCAGGTATAATGCAAACAAC AGGAAGTATATTGATACAATAATTGACAAATGTCCAGAAGGGAGCAATGA TTTGTTCAGTAAAGGAACCGATGATTTTGTTGACTATTCAACTGGAGGGG GAACAGGTTTGTCTCTCAAAAACTTGATGAAGTTACATAAAAAAGTTATT GTCACAACTCACAATGCTCACAGAACGCAAGTCCAATGgaacaataaatt aaaattagcCTTCTATTTGGAAGATGTAGAGACCAACAGGACAAACCCAG AAaggatttttaaaagttctttttCAGACCATTACACCACAAGTCGAGTA AAGCTTCAGTTACACTGGTTTTGGGAAATCCAGTTGAAACCTATTTTCTT CAAGCTATTATGTTTAGCTTTAATTGTTTTCAGTGCTTTGCTTGTTTggt ctgaaacaacatttttcagTGTTGATCCAACTTTATCTATGTTCGCCTGG TTAATCGAAACATCTGGAAAAAGCTATCGTTACTTTGATATAGAAGTTGT ATCTTGCCTCACAATTGCATACATGTGTGCATGCACCTATTATACcgtct tcaaaataaagattttcaacttttattaTTTCGCACCACACCATCAAACT GATGCCAACAGTCTCATGTTCAGTGGCTTACTTCTTTGCCGTCTTACATA TGCGTTGTGTTTGAATTTCTTAGCCATGATTCATCTTGATGGTCATGTTA CTGGAACAAATGAACATTCACAGGGAGTAAAAACAGTCATTGAAACAcaa ttcacaaaatttatgGGACACATGGATCTGTTATCATTTGTTGCAAAAGG CTTGAATGTTTACTACCCGATGATTGTGCTCTTAGTTTGCATTTGCACTT TCTTCAGCCTTGGAAAACGTTGTTTGCATTTGATTGGAATCGAACAATTC CTTTCAGAAGATGATTTTTCAGCTGATTATGTTCGTGAAGGAAAGGAAAT TGTGAGAAGAGAAAAACGTAAAGCCCAAAGAGAGATCAATGGTCGAGGTG ATTGGAGTACAAGATCGAAGAAAATCCAGGAAAAATATACACAGCGACCG ATTGGTAGTTCTTCAAGTGCAAGAGGTACAAGACCTGATTCTCGAATTGA CGACTCAGATGATGATTCCCTTATAAATCCTTCTAAAACACCAAAATCga aattgaatcaaaataacaaaacaaagTACACTCAATTTGAGAATGATGCC CGAGTCGATATCGGTTATAAACCTGAACAAACTACAGCTTCAGGTTATGA AAATATTACTGGGTCAAATCGACCAAAAGTTCCAAGAAATATATTTGATG ATGCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00017898-exon-sc0000278-1491911889:347685..350748 | TCONS_00017898-exon-sc0000278-1491911889:347685..350748 | Clytia hemisphaerica | exon |
TCONS_00017898-exon-sc0000278-1510915933:347685..350748 | TCONS_00017898-exon-sc0000278-1510915933:347685..350748 | Clytia hemisphaerica | exon |
TCONS_00017898-exon-sc0000278-1575043694:347685..350748 | TCONS_00017898-exon-sc0000278-1575043694:347685..350748 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000278 | supercontig | sc0000278:347685..350748 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR006876 | LMBR1-like_membr_prot |
Blast
BLAST of TCONS_00017898 vs. Swiss-Prot (Human)
Match: LMBD2 (LMBR1 domain-containing protein 2 OS=Homo sapiens GN=LMBRD2 PE=1 SV=1) HSP 1 Score: 497.664 bits (1280), Expect = 5.789e-162 Identity = 288/620 (46.45%), Postives = 389/620 (62.74%), Query Frame = -2
Query: 1105 MSVGPFAVEFVVVFIATLIILHQYGNLRKQHFLVSLAVFTSWXXXXXXXXXXXLDVSNTYYLECEE-----------HFKGL---NNSNDTHSGCVVPWSHMPSYFLPDLWRIVYWSSQILSWLLLPIMQSYVYAGDFTIWGKIKTALYENALWYGSYLLIFGALLIYVAVKPELTLNAENLKLIGITASNTWXXXXXXXXXXXXLVELPRNAWNMSKPKLRLEQIYFRLSKLSTEKEDADDELADVLTEVRKASEEIRYNANNRKYIDTIIDKCPEGSNDLFSKGTDDFVDYSTGGGTGLSLKNLMKLHKKVIVTTHNAHRTQVQWNNKLKLAFYLEDVETNRTNPERIFKSSFSDHYTTSRV-----KLQLHWFWEIQLKPIFFKLLCLALIVFSALLVWSETTFFSVDPTLSMFAWLIETSGKSYRYFDIEVVSCLTIAYMCACTYYTVFKIKIFNFYYFAPHHQTDANSLMFSGXXXXXXXXXXXLNFLAMIHLDGHVTGTNEHSQGVKTVIETQFTKFMGHMDLLSFVAKGLNVYYPMIVLLVCICTFFSLGKRCLHLIGIEQFLSEDDFSADYVREGKEIVRREKRKAQREING---RGDWSTRSKKIQEKYTQ 2898
MS +E V VF L +LH+YG+ +KQH LV + +W+ LI+FILPLDVS T Y C+ + GL N + C PWS++P +P WR+VYW+SQ L+W+LLP MQSY +G F+I GKIKTAL ENA++YG+YLLIFGA LIYVAV P L L L+ IGI A+NTWGL LLV L+GYGLVE+PR+ WN +K L + YF+ +KL TEK DA++ L D + EVRK +E I+YN RK +DTI+ KCP + + DD+ D+ S K+L+KLHK+VI + RTQVQW L+ AFYLEDV N T+ F +F +R W+WE L+P F+K+L + L +FS ++VWSE TFFS P LS+FA I+ + K+Y Y IE+ L+I ++ C Y TVF+I++FN+YY A HHQTDA SL+FSG+L CRLT LCLNFL + H+D ++ N T +T MG M +LSF+A G +YYPM+V+++CI T+FSLG RCL+L+G +QF+ +DD ++D V EGKE++R+EKRK QR+ G R +W R +E T+
Sbjct: 1 MSGAALGLEIVFVFFLALFLLHRYGDFKKQHRLVIIGTLLAWYLCFLIVFILPLDVSTTIYNRCKHAAANSSPPENSNITGLYATANPVPSQHPCFKPWSYIPDGIMPIFWRVVYWTSQFLTWILLPFMQSYARSGGFSITGKIKTALIENAIYYGTYLLIFGAFLIYVAVNPHLHLEWNQLQTIGIAAANTWGLFLLVLLLGYGLVEIPRSYWNGAKRGYLLMKTYFKAAKLMTEKADAEENLEDAMEEVRKVNESIKYNHPLRKCVDTILKKCPTEYQEKMGRNMDDYEDFDEKHSIYPSEKSLVKLHKQVIYSVQRHRRTQVQWQILLEQAFYLEDVAKNETSATHQFVHTFQSPEPENRFIQYFYNPTFEWYWECLLRPWFYKILAVVLSIFSVIVVWSECTFFSTTPVLSLFAVFIQLAEKTYNYIYIEIACFLSIFFLSICVYSTVFRIRVFNYYYLASHHQTDAYSLLFSGMLFCRLTPPLCLNFLGLTHMDSSISHKNTQP--------TAYTSIMGSMKVLSFIADGFYIYYPMLVVILCIATYFSLGTRCLNLLGFQQFMGDDDMTSDLVNEGKELIRKEKRKRQRQEEGENRRREWKERYGHNREDSTR 612
The following BLAST results are available for this feature:
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