TCONS_00017898-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00017898-protein
Unique Name	TCONS_00017898-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	685

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00017898-protein ID=TCONS_00017898-protein|Name=TCONS_00017898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=685bp
MSVGPFAVEFVVVFIATLIILHQYGNLRKQHFLVSLAVFTSWFFSILIIF
ILPLDVSNTYYLECEEHFKGLNNSNDTHSGCVVPWSHMPSYFLPDLWRIV
YWSSQILSWLLLPIMQSYVYAGDFTIWGKIKTALYENALWYGSYLLIFGA
LLIYVAVKPELTLNAENLKLIGITASNTWGLLLLVFLMGYGLVELPRNAW
NMSKPKLRLEQIYFRLSKLSTEKEDADDELADVLTEVRKASEEIRYNANN
RKYIDTIIDKCPEGSNDLFSKGTDDFVDYSTGGGTGLSLKNLMKLHKKVI
VTTHNAHRTQVQWNNKLKLAFYLEDVETNRTNPERIFKSSFSDHYTTSRV
KLQLHWFWEIQLKPIFFKLLCLALIVFSALLVWSETTFFSVDPTLSMFAW
LIETSGKSYRYFDIEVVSCLTIAYMCACTYYTVFKIKIFNFYYFAPHHQT
DANSLMFSGLLLCRLTYALCLNFLAMIHLDGHVTGTNEHSQGVKTVIETQ
FTKFMGHMDLLSFVAKGLNVYYPMIVLLVCICTFFSLGKRCLHLIGIEQF
LSEDDFSADYVREGKEIVRREKRKAQREINGRGDWSTRSKKIQEKYTQRP
IGSSSSARGTRPDSRIDDSDDDSLINPSKTPKSKLNQNNKTKYTQFENDA
RVDIGYKPEQTTASGYENITGSNRPKVPRNIFDDA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010035	XLOC_010035	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00017898	TCONS_00017898	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006876	LMBR1-like_membr_prot

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 216..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 571..685
IPR006876	LMBR1-like membrane protein	PFAM	PF04791	LMBR1	coord: 1..538 e-value: 2.7E-159 score: 531.3

Blast

[Close]

BLAST of TCONS_00017898-protein vs. Swiss-Prot (Human)
Match: LMBD2 (LMBR1 domain-containing protein 2 OS=Homo sapiens GN=LMBRD2 PE=1 SV=1)

HSP 1 Score: 544.658 bits (1402), Expect = 0.000e+0
Identity = 302/696 (43.39%), Postives = 419/696 (60.20%), Query Frame = 0

Query:    1 MSVGPFAVEFVVVFIATLIILHQYGNLRKQHFLVSLAVFTSWFFSILIIFILPLDVSNTYYLECEE-----------HFKGL---NNSNDTHSGCVVPWSHMPSYFLPDLWRIVYWSSQILSWLLLPIMQSYVYAGDFTIWGKIKTALYENALWYGSYLLIFGALLIYVAVKPELTLNAENLKLIGITASNTWGLLLLVFLMGYGLVELPRNAWNMSKPKLRLEQIYFRLSKLSTEKEDADDELADVLTEVRKASEEIRYNANNRKYIDTIIDKCPEGSNDLFSKGTDDFVDYSTGGGTGLSLKNLMKLHKKVIVTTHNAHRTQVQWNNKLKLAFYLEDVETNRTNPERIFKSSFSDHYTTSRV-----KLQLHWFWEIQLKPIFFKLLCLALIVFSALLVWSETTFFSVDPTLSMFAWLIETSGKSYRYFDIEVVSCLTIAYMCACTYYTVFKIKIFNFYYFAPHHQTDANSLMFSGLLLCRLTYALCLNFLAMIHLDGHVTGTNEHSQGVKTVIETQFTKFMGHMDLLSFVAKGLNVYYPMIVLLVCICTFFSLGKRCLHLIGIEQFLSEDDFSADYVREGKEIVRREKRKAQREINGRGDWSTRSKKIQEKYTQRPIGSSSSARGTRPDSRIDDSDDDSLINPSKTPKSKLNQNNKTKYTQFE--NDARVDIGYKPEQTTASGYENITGSNRP 675
            MS     +E V VF   L +LH+YG+ +KQH LV +    +W+   LI+FILPLDVS T Y  C+            +  GL    N   +   C  PWS++P   +P  WR+VYW+SQ L+W+LLP MQSY  +G F+I GKIKTAL ENA++YG+YLLIFGA LIYVAV P L L    L+ IGI A+NTWGL LLV L+GYGLVE+PR+ WN +K    L + YF+ +KL TEK DA++ L D + EVRK +E I+YN   RK +DTI+ KCP    +   +  DD+ D+        S K+L+KLHK+VI +     RTQVQW   L+ AFYLEDV  N T+    F  +F      +R           W+WE  L+P F+K+L + L +FS ++VWSE TFFS  P LS+FA  I+ + K+Y Y  IE+   L+I ++  C Y TVF+I++FN+YY A HHQTDA SL+FSG+L CRLT  LCLNFL + H+D  ++  N           T +T  MG M +LSF+A G  +YYPM+V+++CI T+FSLG RCL+L+G +QF+ +DD ++D V EGKE++R+EKRK QR+  G      R ++ +E+Y       S+  R    D +  +  D   +N +++       NN+T+  + E   DA   + +  E  T    E+ +G  +P
Sbjct:    1 MSGAALGLEIVFVFFLALFLLHRYGDFKKQHRLVIIGTLLAWYLCFLIVFILPLDVSTTIYNRCKHAAANSSPPENSNITGLYATANPVPSQHPCFKPWSYIPDGIMPIFWRVVYWTSQFLTWILLPFMQSYARSGGFSITGKIKTALIENAIYYGTYLLIFGAFLIYVAVNPHLHLEWNQLQTIGIAAANTWGLFLLVLLLGYGLVEIPRSYWNGAKRGYLLMKTYFKAAKLMTEKADAEENLEDAMEEVRKVNESIKYNHPLRKCVDTILKKCPTEYQEKMGRNMDDYEDFDEKHSIYPSEKSLVKLHKQVIYSVQRHRRTQVQWQILLEQAFYLEDVAKNETSATHQFVHTFQSPEPENRFIQYFYNPTFEWYWECLLRPWFYKILAVVLSIFSVIVVWSECTFFSTTPVLSLFAVFIQLAEKTYNYIYIEIACFLSIFFLSICVYSTVFRIRVFNYYYLASHHQTDAYSLLFSGMLFCRLTPPLCLNFLGLTHMDSSISHKNTQP--------TAYTSIMGSMKVLSFIADGFYIYYPMLVVILCIATYFSLGTRCLNLLGFQQFMGDDDMTSDLVNEGKELIRKEKRKRQRQEEGEN----RRREWKERYGHNR-EDSTRNRNIHTDPKESNFSD---VNTNRSAFKYTRANNRTERDRIELLQDAE-PLDFNAETFTDDPLESESGRYQP 679

The following BLAST results are available for this feature:

BLAST of TCONS_00017898-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00017898-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LMBD2	0.000e+0	43.39	LMBR1 domain-containing protein 2 OS=Homo sapiens ...	[more]

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TCONS_00017898-protein (polypeptide) - C. hemisphaerica