TCONS_00017885 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017885
Unique NameTCONS_00017885
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length714

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017885 ID=TCONS_00017885|Name=TCONS_00017885|organism=Clytia hemisphaerica|type=transcript|length=714bp
GTTAGACTTAGAAAAAGTTTATAGAAATATTATATCAATTATATAAGTAT
TAtatcagaaaatattttaatttcaagCAAGATTTGGCTTTTTTGCTGCA
ACTTCTTTGTCATTTTAGTATCATTCATTTATAAGAACGTCTTGCTAGAG
CCAATGCATCTTATTTTCTTCAACTGACTCTCGATTTTAAAGCATTGGAT
TTTGGTATTCGTTGCTCTTGGAGATCGTACACCTCATCAGAGGTCCTTTG
TCTCATTCAACATTACGATAACATCACGCATATGTCACGAGATggctaca
cccctgtctcacagccctggtggaacTCTTTTGCTCAAATTGTAGGCTAT
TTTCCCACCAAGacgaaattttgacaaaatgtttCGGCGGTAGGGAGGTA
CATCGGatctatgacacaggggtgtatactCTCTGGTACCTAATAGCAAG
GGgtcgctaattaatttttcgaaaattttccacccaggacattcttattc
cacgTGTTCATGCGATCCACTCCAAAACCACCGCACTCTCATTCTTCGTC
AAAGGTTGACACTTTATCAACTGGCAGGCCCCTGGCATTGTGATTGAAAT
GGACGCTAATTCCCATCCGGTACGACGACGTGAAGTGGATGGTTGTTTTG
GTGATTCAGCTTCGTTTTGTGGTGGTGGTTTTCTCCGGATAGTGGATTGT
TTTCGAGCGCTGAC
Run BLAST on NCBI

transcript from alignment at sc0000278:15676..16389

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017885 ID=TCONS_00017885|Name=TCONS_00017885|organism=Clytia hemisphaerica|type=transcript|length=714bp|location=Sequence derived from alignment at sc0000278:15676..16389 (Clytia hemisphaerica)
GTCAGCGCTCGAAAACAATCCACTATCCGGAGAAAACCACCACCACAAAA
CGAAGCTGAATCACCAAAACAACCATCCACTTCACGTCGTCGTACCGGAT
GGGAATTAGCGTCCATTTCAATCACAATGCCAGGGGCCTGCCAGTTGATA
AAGTGTCAACCTTTGACGAAGAATGAGAGTGCGGTGGTTTTGGAGTGGAT
CGCATGAACAcgtggaataagaatgtcctgggtggaaaattttcgaaaaa
ttaattagcgacCCCTTGCTATTAGGTACCAGAGagtatacacccctgtg
tcatagatCCGATGTACCTCCCTACCGCCGaaacattttgtcaaaatttc
gtCTTGGTGGGAAAATAGCCTACAATTTGAGCAAAAGAgttccaccaggg
ctgtgagacaggggtgtagccATCTCGTGACATATGCGTGATGTTATCGT
AATGTTGAATGAGACAAAGGACCTCTGATGAGGTGTACGATCTCCAAGAG
CAACGAATACCAAAATCCAATGCTTTAAAATCGAGAGTCAGTTGAAGAAA
ATAAGATGCATTGGCTCTAGCAAGACGTTCTTATAAATGAATGATACTAA
AATGACAAAGAAGTTGCAGCAAAAAAGCCAAATCTTGcttgaaattaaaa
tattttctgataTAATACTTATATAATTGATATAATATTTCTATAAACTT
TTTCTAAGTCTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010022XLOC_010022Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017885-exon-sc0000278-1491911889:15676..16389TCONS_00017885-exon-sc0000278-1491911889:15676..16389Clytia hemisphaericaexon
TCONS_00017885-exon-sc0000278-1510915933:15676..16389TCONS_00017885-exon-sc0000278-1510915933:15676..16389Clytia hemisphaericaexon
TCONS_00017885-exon-sc0000278-1575043694:15676..16389TCONS_00017885-exon-sc0000278-1575043694:15676..16389Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000278supercontigsc0000278:15676..16389 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.321685	0.079085	0.104828	0	0.0915877	0.17097	0.238351	0.0739805	0.143679	0.0471641	0.0945957	0.346632	0.36082	0.129728	0	0	1.36151	1.10161	1.78147	2.03852	0	0	0.0755632	0.0675733	0	0	0	0.0809633
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017885 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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