TCONS_00017867 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017867
Unique NameTCONS_00017867
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length315

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017867 ID=TCONS_00017867|Name=TCONS_00017867|organism=Clytia hemisphaerica|type=transcript|length=315bp
ttagggacaagctggagtttttacaagctcttatttgatttggttggtcg
ttaaccagtaataaaacaattttgttactttttctaaagaacgcgtcgtc
tctatcacttcaaatgaccaattagtgaagtatcttgtaaaaactccagg
tGCGCACCATAGCAAAGGAAGCTCGCGTTTGAGCAATTAAAGTTGTGAAG
GAGAAAGATGAAGAAGAGTCGAGCAATGGAACAATCATTGCGTTTGTTGT
TGTCTTGGTAATCTTCATCCTAATCGCTGCTTGTGGTGTCCTTTATTATC
TCCATAAACAAGGGG
Run BLAST on NCBI

transcript from alignment at sc0000278:33842..34541-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017867 ID=TCONS_00017867|Name=TCONS_00017867|organism=Clytia hemisphaerica|type=transcript|length=700bp|location=Sequence derived from alignment at sc0000278:33842..34541- (Clytia hemisphaerica)
TTAGGGACAAGCTGGAGTTTTTACAAGCTCTTATTTGATTTGGTTGGTCG
TTAACCAGTAATAAAACAATTTTGTTACTTTTTCTAAAGAACGCGTCGTC
TCTATCACTTCAAATGACCAATTAGTGAAGTATCTTGTAAAAACTCCAGG
TGCGCACCATAGCAAAGGAAGCTCGCGTTTGAGCAATTAAAGGTATGGCC
ATTTTTGAGGCGAAAATCGATTTGAAAGCAATGACCGTACCGGTAGTCGA
ATAATTTTGACTTTTAGAAAAGAGAGAATATTCAAAATTGCAACTATTTG
TTATAATTTTTTTAAATTCATTTAGAAGTTCACCAGGGATCCCAATGTTT
GTGTGTCCAATGCAATTATTACAGTTGACGCTCTCTTATTCGACATTCGA
CTTTTTGATACGCTCCCTTACTAGTATTTCATTTAAAGTCACCGTTAACA
AAACCTCTCATGAAAGGCGTTCTACCATTCAATACGCTCCAATATTCAAT
GAAATCCTAACCCCCTCAAAAATCGAATTAGAGAGCGTCAACTATATTTC
ATTTTCACTTTTTCATTTCGATGTTAGTTGTGAAGGAGAAAGATGAAGAA
GAGTCGAGCAATGGAACAATCATTGCGTTTGTTGTTGTCTTGGTAATCTT
CATCCTAATCGCTGCTTGTGGTGTCCTTTATTATCTCCATAAACAAGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010011XLOC_010011Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017867-exon-sc0000278-1575043694:34350..34541TCONS_00017867-exon-sc0000278-1575043694:34350..34541Clytia hemisphaericaexon
TCONS_00017867-exon-sc0000278-1575043694:33842..33964TCONS_00017867-exon-sc0000278-1575043694:33842..33964Clytia hemisphaericaexon
TCONS_00017867-exon-sc0000278-1510915933:34350..34541TCONS_00017867-exon-sc0000278-1510915933:34350..34541Clytia hemisphaericaexon
TCONS_00017867-exon-sc0000278-1510915933:33842..33964TCONS_00017867-exon-sc0000278-1510915933:33842..33964Clytia hemisphaericaexon
TCONS_00017867-exon-sc0000278-1491911889:34350..34541TCONS_00017867-exon-sc0000278-1491911889:34350..34541Clytia hemisphaericaexon
TCONS_00017867-exon-sc0000278-1491911889:33842..33964TCONS_00017867-exon-sc0000278-1491911889:33842..33964Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000278supercontigsc0000278:33842..34541 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.43012	0.74725	0	0	0	0	0.600421	0.267611	0	2.77315	0	0	0	0	3.83091	0.249611	4.70814	2.56299	0	0.984664	0	0	8.06653	15.6762	11.837	5.91727
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017867 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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