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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017833 ID=TCONS_00017833|Name=TCONS_00017833|organism=Clytia hemisphaerica|type=transcript|length=2024bpRun BLAST on NCBI transcript from alignment at sc0000278:75628..83687+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017833 ID=TCONS_00017833|Name=TCONS_00017833|organism=Clytia hemisphaerica|type=transcript|length=8060bp|location=Sequence derived from alignment at sc0000278:75628..83687+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00017833 vs. Swiss-Prot (Human)
Match: CLU (Clustered mitochondria protein homolog OS=Homo sapiens GN=CLUH PE=1 SV=2) HSP 1 Score: 473.396 bits (1217), Expect = 1.528e-150 Identity = 232/452 (51.33%), Postives = 315/452 (69.69%), Query Frame = 2
Query: 314 ETLPVQLSNHDTVQDIRQIILEKPECCYRTCFSLYLEGTRLDDFMELHDIPGLSDNSVIKVVDEPYSIREARIHIRRLRDLLVTMLEPNAFTATDNLSLSYCSAITEVDVEEEAWKAMKDKNNYQKGNV-TLPPNFAGLKSKPSVEQIIIP----DYDVQLPTCLKDLRFSSWNPPPGYRKLAGDLLYLEVVTLDHPEHVYHITSSSNGFFVNRITNHLFDPRPANDSQRSQTLAGLLNMISPLFKKNFCSIQRTTIKKHPLELVSSPQQVFPWVSPQFEHTRDPFRAEDAVTNRIGYEEQIPGQLRDWNEELQSAKELPKKTRHQRTLRDRALYKITCDFIAAATRGAVAVVDGNVMAINPGEEEKMRMYIWNNIFFSFACDSRDHYQKYGGDEAAYTAASLDLKGVELYNKLDVEGLYTLGTVVVDYRGYRIIAQSIIPGILQREQENSV 1654
E +Q+S + VQ+I Q+++++ + C+RTCFSL+L+G LD F EL + GL + SV++VV+EPY++REARIH+R +RDLL ++ +AF D SLS+ S T+ D+ + K K + + PP + S+ E+ + P + D + CLK L S WNPPPG RK+ GDL+YL V+T + + IT+S+ GF++N+ T + F+P+PA+ S +L LLN ISP FKKNF +Q+ +++HP E +++P QV+ W +PQ EH D RAEDA T+R+GYEE IPGQ RDWNEELQ+ +ELP+K +R LR+RA++K+ DF AAATRGA+AV+DGNVMAINP EE KM+M+IWNNIFFS D RDHY+ +GGD AAY A + DL GV YN +DVEGLYTLGTVVVDYRGYR+ AQSIIPGIL+R+QE SV
Sbjct: 58 EPFSLQVSPQEMVQEIHQVLMDREDTCHRTCFSLHLDGNVLDHFSELRSVEGLQEGSVLRVVEEPYTVREARIHVRHVRDLLKSLDPSDAFNGVDCNSLSFLSVFTDGDLGDSG----KRKKGLEMDPIDCTPPEYILPGSR---ERPLCPLQPQNRDWKPLQCLKVLTMSGWNPPPGNRKMHGDLMYLFVITAE--DRQVSITASTRGFYLNQSTAYHFNPKPASPRFLSHSLVELLNQISPTFKKNFAVLQKKRVQRHPFERIATPFQVYSWTAPQAEHAMDCVRAEDAYTSRLGYEEHIPGQTRDWNEELQTTRELPRKNLPERLLRERAIFKVHSDFTAAATRGAMAVIDGNVMAINPSEETKMQMFIWNNIFFSLGFDVRDHYKDFGGDVAAYVAPTNDLNGVRTYNAVDVEGLYTLGTVVVDYRGYRVTAQSIIPGILERDQEQSV 500 HSP 2 Score: 170.244 bits (430), Expect = 8.006e-44 Identity = 75/109 (68.81%), Postives = 93/109 (85.32%), Query Frame = 1
Query: 1657 GTVVVDYRGYRIIAQSIIPGILQREQENSVVYGSVDGGKTIATHEQFLEKLKTAGLSLKIRPHKVINEKDEDVELCSSIECKGIIGADGRHYILDLFRSFPPDVNFLDV 1983
GTVVVDYRGYR+ AQSIIPGIL+R+QE SV+YGS+D GKT+ +H ++LE L+ LKI H+V+N++DE+VELCSS+ECKGIIG DGRHYILDL R+FPPD+NFL V
Sbjct: 471 GTVVVDYRGYRVTAQSIIPGILERDQEQSVIYGSIDFGKTVVSHPRYLELLERTSRPLKILRHQVLNDRDEEVELCSSVECKGIIGNDGRHYILDLLRTFPPDLNFLPV 579 The following BLAST results are available for this feature:
BLAST of TCONS_00017833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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