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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017787 ID=TCONS_00017787|Name=TCONS_00017787|organism=Clytia hemisphaerica|type=transcript|length=2133bp
ggaGAGATTGGAATCTTGTTATATTCCCTGTTGTTTTGGGGTTTAGAATC
GAAAAAACAGATCAtcattggaaagaaaaatatgacATTTTTGGAAACTG
ACAAGTAGATAGTGTCAAAGTGgttgaagttttctttaaacAATATCTCC
TCAAAATTCTTACGGTCACAAACTAAATTTTATTGATCCGTTACAGCAAC
ACTACCTGTCTACAAAATGGGAAAGACATCTTCGACTTTACGTGAAGAGA
AGAGAGGAAGCTTTCTTTCACCACGTTTGACGCGGCGAAAAAGGAAAGAA
GACCCTTCTGAAGGATCATCAGGTAATACTATGCTAcctaaaagtaaaaa
gaaatattctaaaagtgaagaagaagagCAATCTATATCACAAGTGAACA
ATAACGTTTCTTCTACAAATACAAAGGGTAGGAAAGGAAGTTCGAAAAGT
TCTACAGCCTCACATAATGGTTTTGTTATCGAACGAAGAAGAGTTTTACC
CAAGAATCCTTTACAGTCGATTATGCAGGACGGAGCTGATGGTCTTTATT
TCTGGTTTGTCAGTACTTGGATGAGGTTAAAACGTAAACATTTCGATCCT
ACAGATTTCAAAAGACGTTATGATGGTCAGAAAGATTCGAACAAAATGTG
GAGAGAAAGTACTTTGAGCGATGCTACCTCGGTTTTTGATTTAGACAATG
ATATTGAAGATATTGACGAGTTAATCGAAAATACCGAGTTGAAAAACTCG
AACGACGATTTATCTGTGGAGTCGTTAGAAGACAAGGGTGAAATGGAAAT
AAACTTTGATTCTGGTGAAGTTACATTTCGAAATGATCTAAGTGAAGGAA
TATAGAATTTCTAGGAGCGAGTTGTAACGACGAGTTAACAGAGTAGCTTT
AATGCTCGAAACGGCAAGTTGTATCAAATTTGTGAAGTAAGCATAAATTA
ATCCGGAattcttatttcaaatttttaattaatacGGTTAGATGAATTTG
AATGGAAAAGGTTTTGTGTTTCATCGATGCATGCGAATGACAGTGAAGAG
ATCGATAACCATATTTTACATTCAAATGTTGAGACAATTTGAGCTTAGAC
TTACATAAAGAATCAATAGACAGGACTATATTTGATATTACCTTtaaagt
ggataaattttggcgtggatttgatttggcgattggccaaaatacgattt
ttggcggggatttaatttggcgaattggaaattttgtcacactgaaatgg
atgaaaattactaaaaaatatacaaaaaagttgtgatttttcacataatt
ctctttttgttaaatttggcggggatttaatttggagaATGGcagatttt
ggaaattttggggacgatttaatttggtgaattttggCAAGATTCGCCAA
ATtcaatccccgccaaaatttatccacttaaggtaatcgATACTTTTGAG
GAttggaaaaagaaaactttttctatcatttttcacttttcatatTCAGA
TATTTATATCTCACCTCACATTTACAAAGCTTTCAAAAGTgcattttata
aataaaaatgatttaaataGCGGGTACTATAATTACTAAAATACAGtaaa
ataaaactattttaATCATATCAGTAAAGtatctgcctattgttattatt
ttgctgaataaacaaaaaaaagtttcttttttctctctgaccaatcttgc
tccacattcttgtcaattcaatgtgaaaaagcttgttaattaggatgatg
agtaagcaaacaatattactcttatttaaaaacaaaacctttaatagaGC
AATGACGATGtcaacaattttataatttggTCGTAGGCCGTTGTCTATAC
CGTGGGTTCATACTCCACATTCTCTTAAATATGagtaaataaaaaatatg
actTTATGATACagttaaaaatattcaattgaaTATTAACAATAAAATAC
AACTGTAAGAAAAAATGATCATTTGATTAAAGTGTCAGCACCATTTTCTT
TGTTGCCCATTCGTAGAATGTAGTCATGAAATTTCAGCTGGTAAAGAGTT
GCAGTGCTGGCTATCCAAAACATTAATTTATTGAGGATGATTACTCTAAG
GTTCCAAATAAActgggggttcgaataaacggg Run BLAST on NCBI protein sequence of TCONS_00017787-protein >TCONS_00017787-protein ID=TCONS_00017787-protein|Name=TCONS_00017787-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MGKTSSTLREEKRGSFLSPRLTRRKRKEDPSEGSSGNTMLPKSKKKYSKS
EEEEQSISQVNNNVSSTNTKGRKGSSKSSTASHNGFVIERRRVLPKNPLQ
SIMQDGADGLYFWFVSTWMRLKRKHFDPTDFKRRYDGQKDSNKMWRESTL
SDATSVFDLDNDIEDIDELIENTELKNSNDDLSVESLEDKGEMEINFDSG
EVTFRNDLSEGI Run BLAST on NCBI transcript from alignment at sc0000276:14883..17373- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017787 ID=TCONS_00017787|Name=TCONS_00017787|organism=Clytia hemisphaerica|type=transcript|length=2491bp|location=Sequence derived from alignment at sc0000276:14883..17373- (Clytia hemisphaerica)
GGAGAGATTGGAATCTTGTTATATTCCCTGTTGTTTTGGGGTTTAGAATC
GAAAAAACAGATCATCATTGGAAAGAAAAATATGACATTTTTGGAAACTG
ACAAGTAGATAGTGTCAAAGTGGTTGAAGTTTTCTTTAAACAATATCTCC
TCAAAATTCTTACGGTCACAAACTAAATTTTATTGATCCGTTACAGCAAC
ACTACCTGTCTACAAAATGGGAAAGACATCTTCGACTTTACGTGAAGAGA
AGAGAGGAAGCTTTCTTTCACCACGTTTGACGCGGCGAAAAAGGAAAGAA
GACCCTTCTGAAGGATCATCAGGTAATACTATGCTACCTAAAAGTAAAAA
GAAATATTCTAAAAGTGAAGAAGAAGAGCAATCTATATCACAAGTGAACA
ATAACGTTTCTTCTACAAATACAAAGGGTAGGAAAGGAAGTTCGAAAAGT
TCTACAGCCTCACATAATGGTTTTGTTATCGAACGAAGAAGAGTTTTACC
CAAGAATCCTTTACAGTCGATTATGCAGGACGGAGCTGATGGTCTTTATT
TCTGGTTTGTCAGTACTTGGATGAGGTTAAAACGTAAACATTTCGATCCT
ACAGATTTCAAAAGACGTTATGATGGTCAGAAAGATTCGAACAAAATGTG
GAGAGAAAGTACTTTGAGCGATGCTACCTCGGTTTTTGATTTAGACAATG
ATATTGAAGATATTGACGAGTTAATCGAAAATACCGAGTTGAAAAACTCG
AACGACGATTTATCTGTGGAGTCGTTAGAAGACAAGGGTGAAATGGAAAT
AAACTTTGATTCTGGTGAAGTTACATTTCGAAATGATCTAAGTGAAGGAA
TATAGAATTTCTAGGAGCGAGTTGTAACGACGAGTTAACAGAGTAGCTTT
AATGCTCGAAACGGCAAGTTGTATCAAATTTGTGAAGTAAGCATAAATTA
ATCCGGAATTCTTATTTCAAATTTTTAATTAATACGGTTAGATGAATTTG
AATGGAAAAGGTTTTGTGTTTCATCGATGCATGCGAATGACAGTGAAGAG
ATCGATAACCATATTTTACATTCAAATGTTGAGACAATTTGAGCTTAGAC
TTACATAAAGAATCAATAGACAGGACTATATTTGATATTACCTTTAAAGT
GGATAAATTTTGGCGTGGATTTGATTTGGCGATTGGCCAAAATACGATTT
TTGGCGGGGATTTAATTTGGCGAATTGGAAATTTTGTCACACTGAAATGG
ATGAAAATTACTAAAAAATATACAAAAAAGTTGTGATTTTTCACATAATT
CTCTTTTTGTTAAATTTGGCGGGGATTTAATTTGGAGAATGGCAGATTTT
GGAAATTTTGGGGACGATTTAATTTGGTGAATTTTGGCAAGATTCGCCAA
ATTCAATCCCCGCCAAAATTTATCCACTTAAGGTAATCGATACTTTTGAG
GATTGGAAAAAGAAAACTTTTTCTATCATTTTTCACTTTTCATATTCAGA
TATTTATATCTCACCTCACATTTACAAAGCTTTCAAAAGTGCATTTTATA
AATAAAAATGATTTAAATAGCGGGTACTATAATTACTAAAATACAGTAAA
ATAAAACTATTTTAATCATATCAGTAAAGTATCTGCCTATTGTTATTATT
TTGCTGAATAAACAAAAAAAAGTTTCTTTTTTCTCTCTGACCAATCTTGC
TCCACATTCTTGTCAATTCAATGTGAAAAAGCTTGTTAATTAGGATGATG
AGTAAGCAAACAATATTACTCTTATTTAAAAACAAAACCTTTAATAGAGC
AATGACGATGTCAACAATTTTATAATTTGGTCGTAGGCCGTTGTCTATAC
CGTGGGTTCATACTCCACATTCTCTTAAATATGAGTACATTAAAGGAAGA
AAATTTTGGCGGGAATTTAATTTGGCGGATGGCCGAAAAAGTTTTTTCAG
AGGGATTTTAATTTGGCGGTTAGCTAACTTGAAAAATTTAATTTGGCAGG
AGTTAAATTTGGCGGACGAAGGACATTTTTGTCGAAAAAACGCCACTAAA
AAGGAAAAACTTGTTTCAAAGCCTGAAATAGCACACATTTGGGGGAATAA
ATAGAGCAACTTAAATTTGGCGGGAATTTAATTTGGCGGATGACGGAAAA
AATTAAATTTGGCGGAAACTTAATTTGGCGGATTTGGTCAAAATCCGCCA
AATCCGCCAAATTTTCTTCCCGCTAAAATTTCTTCCTTTAAGGTAAATAA
AAAATATGACTTTATGATACAGTTAAAAATATTCAATTGAATATTAACAA
TAAAATACAACTGTAAGAAAAAATGATCATTTGATTAAAGTGTCAGCACC
ATTTTCTTTGTTGCCCATTCGTAGAATGTAGTCATGAAATTTCAGCTGGT
AAAGAGTTGCAGTGCTGGCTATCCAAAACATTAATTTATTGAGGATGATT
ACTCTAAGGTTCCAAATAAACTGGGGGTTCGAATAAACGGG Coding sequence (CDS) from alignment at sc0000276:14883..17373- >TCONS_00017787 ID=TCONS_00017787|Name=TCONS_00017787|organism=Clytia hemisphaerica|type=CDS|length=639bp|location=Sequence derived from alignment at sc0000276:14883..17373- (Clytia hemisphaerica)
ATGGGAAAGACATCTTCGACTTTACGTGAAGAGAAGAGAGGAAGCTTTCT
TTCACCACGTTTGACGCGGCGAAAAAGGAAAGAAGACCCTTCTGAAGGAT
CATCAGGTAATACTATGCTACCTAAAAGTAAAAAGAAATATTCTAAAAGT
GAAGAAGAAGAGCAATCTATATCACAAGTGAACAATAACGTTTCTTCTAC
AAATACAAAGGGTAGGAAAGGAAGTTCGAAAAGTTCTACAGCCTCACATA
ATGGTTTTGTTATCGAACGAAGAAGAGTTTTACCCAAGAATCCTTTACAG
TCGATTATGCAGGACGGAGCTGATGGTCTTTATTTCTGGTTTGTCAGTAC
TTGGATGAGGTTAAAACGTAAACATTTCGATCCTACAGATTTCAAAAGAC
GTTATGATGGTCAGAAAGATTCGAACAAAATGTGGAGAGAAAGTACTTTG
AGCGATGCTACCTCGGTTTTTGATTTAGACAATGATATTGAAGATATTGA
CGAGTTAATCGAAAATACCGAGTTGAAAAACTCGAACGACGATTTATCTG
TGGAGTCGTTAGAAGACAAGGGTGAAATGGAAATAAACTTTGATTCTGGT
GAAGTTACATTTCGAAATGATCTAAGTGAAGGAATATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017787-exon-sc0000276-1575043694:15490..17373 | TCONS_00017787-exon-sc0000276-1575043694:15490..17373 | Clytia hemisphaerica | exon |
| TCONS_00017787-exon-sc0000276-1575043694:14883..15131 | TCONS_00017787-exon-sc0000276-1575043694:14883..15131 | Clytia hemisphaerica | exon |
| TCONS_00017787-exon-sc0000276-1510915933:15490..17373 | TCONS_00017787-exon-sc0000276-1510915933:15490..17373 | Clytia hemisphaerica | exon |
| TCONS_00017787-exon-sc0000276-1510915933:14883..15131 | TCONS_00017787-exon-sc0000276-1510915933:14883..15131 | Clytia hemisphaerica | exon |
| TCONS_00017787-exon-sc0000276-1491911889:15490..17373 | TCONS_00017787-exon-sc0000276-1491911889:15490..17373 | Clytia hemisphaerica | exon |
| TCONS_00017787-exon-sc0000276-1491911889:14883..15131 | TCONS_00017787-exon-sc0000276-1491911889:14883..15131 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000276 | supercontig | sc0000276:14883..17373 - |
Blast
The following BLAST results are available for this feature:
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