|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017768 ID=TCONS_00017768|Name=TCONS_00017768|organism=Clytia hemisphaerica|type=transcript|length=1850bp
ATGTCATATTTCATTCTAAATCCGTATGTCAAACTCAAGTTTAGTCAGCT
CTCATTATAGTCGGGCTTGCTGACTATGGAGcctgtgaaaacaatcgaaa
gattGCCTAAAAGTCCTCGATCACTAGGCTATTCACGTTAAATCCACGAC
TTTTTCTATCTAATTGAAGAAGATTTTAGTTCTCTCAAGAATGGCATCCA
GTGTGTTCCATCCTCTTCCTGTGGAAATATTCTCTGgtgttttttttcgg
ttgaaaGAGCATGATAAAGGATTTCTTGCCGTACATTAACAACAAAGTCA
CATAACAATTGATCAATAAAACTGAAGCACCGACAAACTCTTTATCCAAC
GGATCTTGTCGGAAATACGACACGGGGAAACTGACGCCAAATGACACTGA
TGTAATCAAAATAGTGTAAACAAAGGACATTGCCTCGTTCATAAAATCTG
GTAATTTACGGCAGCGATAAGCTTGAGCTGAACACGTTAGTTGGGCGGAC
GTTAGAAGTAAGATTtgtatattttgatgaaaatgtgtGTTGCAGAAATG
GTTTCTAGTCATCGTTGTGCTATCTTCCAGGAAGATAAGCCTCGGTTCTG
TTTGTACATATGAAATAAATAAGATGCCATTTAAAGAAATGCCCACAATG
ATGATTGTTGAAATCTGAGTCAGAAATGTGTTACGAACAACGCCGGCACT
AAGTCGGATATTCGATGAAAATGCAGTGAccaatttttgtgattttgtgt
AGAGGCAAGCCACATGGAATGTGTAGGTGACACTGTAGATTAAGTTTCTT
CCAATACATGTTTCTACTTCAAGATAAGGCAGATTGTATAGAAAATTTAT
TCCAAAGAATACGCCTAACAAGGAGGTGAGATGTAAGAAGGACAATGTTT
TGTCAGATGAACGAACAATTGGAGTTTCTCGTTTGATGACAAAAAGTATT
ATTATGCCGGTATTGATTAAAGCACCGGCACTAGCAAAAGCGACAGTCGT
GTATTGTTGAAAGTCGTTGAAAAGTAGTTTAACATCAGTAAACGGATCTA
CGCATGCTGTTCTTTTTCCATTATCTATGTTGAACTTACCAATACAAGGC
AGGCATGGGCCATCGCCAAACCCAATTTTGATAGTATTCAAAGGACAAAA
GTCACATCTGAATGAATATTCTTCGTCTGCATGTGGAGTAAAATTAACAA
TTCCATATTGTTTGTGGTGACCTGGCGCGCATGTCAGATCCGGCTGGCAG
TGAGCTAGATCAAATTTGACACTTTTTAGATACTTTTCTGATTCTAATGG
AATGTTTTCTTCAGGCCAAATCTGCTTTACTGCAGGGATGATATAGTTTA
GCTGATAGGCTCTCTTTATATTATATCGGTAGACCTCATGAAGTAAACCA
CTGTGTGTTGGTTGTAATGAAACAGCTCGTTTTACTTCGGTCAGTATTTT
ATAAATGCTATCTTCCAAATTGGAAATGGTATAGTCATTAATACTTCTTA
TGTACTGTAATGCACTCCTCTTTGCATAATacaatttaattatgtttgaA
TTGTCACCTGATAAATGGCCTATATCTTGGAACAGGAATATTcgatcagc
caaaatggagtcATTGTATCTCATTAGTTTTGCAACTTCTCGAGTTTTTG
ACGGTGCGCCAAAGAATAAAATAACGGATTTTCGAACCGCACTGTTATTC
AGAAAAGGTTTAATATGCTCTGTGAATACTTTTTGAGTATTTTCATATGT
GAGAAAATTATCCCATTCCAATGTCATTGTCTTTCGTCTCAAACAAAACT
TGCTTGTCTTCTTTAAGACATCATAAGTTTTGTTGTAATAGATATCATAC Run BLAST on NCBI protein sequence of TCONS_00017768-protein >TCONS_00017768-protein ID=TCONS_00017768-protein|Name=TCONS_00017768-protein|organism=Clytia hemisphaerica|type=polypeptide|length=554bp
YDIYYNKTYDVLKKTSKFCLRRKTMTLEWDNFLTYENTQKVFTEHIKPFL
NNSAVRKSVILFFGAPSKTREVAKLMRYNDSILADRIFLFQDIGHLSGDN
SNIIKLYYAKRSALQYIRSINDYTISNLEDSIYKILTEVKRAVSLQPTHS
GLLHEVYRYNIKRAYQLNYIIPAVKQIWPEENIPLESEKYLKSVKFDLAH
CQPDLTCAPGHHKQYGIVNFTPHADEEYSFRCDFCPLNTIKIGFGDGPCL
PCIGKFNIDNGKRTACVDPFTDVKLLFNDFQQYTTVAFASAGALINTGII
ILFVIKRETPIVRSSDKTLSFLHLTSLLGVFFGINFLYNLPYLEVETCIG
RNLIYSVTYTFHVACLYTKSQKLVTAFSSNIRLSAGVVRNTFLTQISTII
IVGISLNGILFISYVQTEPRLIFLEDSTTMTRNHFCNTHFHQNIQILLLT
SAQLTCSAQAYRCRKLPDFMNEAMSFVYTILITSVSFGVSFPVSYFRQDP
LDKEFVGASVLLINCYVTLLLMYGKKSFIMLFQPKKNTREYFHRKRMEHT
GCHS Run BLAST on NCBI transcript from alignment at sc0000274:182576..184425 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017768 ID=TCONS_00017768|Name=TCONS_00017768|organism=Clytia hemisphaerica|type=transcript|length=1850bp|location=Sequence derived from alignment at sc0000274:182576..184425 (Clytia hemisphaerica)
GTATGATATCTATTACAACAAAACTTATGATGTCTTAAAGAAGACAAGCA
AGTTTTGTTTGAGACGAAAGACAATGACATTGGAATGGGATAATTTTCTC
ACATATGAAAATACTCAAAAAGTATTCACAGAGCATATTAAACCTTTTCT
GAATAACAGTGCGGTTCGAAAATCCGTTATTTTATTCTTTGGCGCACCGT
CAAAAACTCGAGAAGTTGCAAAACTAATGAGATACAATgactccattttg
gctgatcgAATATTCCTGTTCCAAGATATAGGCCATTTATCAGGTGACAA
TtcaaacataattaaattgtATTATGCAAAGAGGAGTGCATTACAGTACA
TAAGAAGTATTAATGACTATACCATTTCCAATTTGGAAGATAGCATTTAT
AAAATACTGACCGAAGTAAAACGAGCTGTTTCATTACAACCAACACACAG
TGGTTTACTTCATGAGGTCTACCGATATAATATAAAGAGAGCCTATCAGC
TAAACTATATCATCCCTGCAGTAAAGCAGATTTGGCCTGAAGAAAACATT
CCATTAGAATCAGAAAAGTATCTAAAAAGTGTCAAATTTGATCTAGCTCA
CTGCCAGCCGGATCTGACATGCGCGCCAGGTCACCACAAACAATATGGAA
TTGTTAATTTTACTCCACATGCAGACGAAGAATATTCATTCAGATGTGAC
TTTTGTCCTTTGAATACTATCAAAATTGGGTTTGGCGATGGCCCATGCCT
GCCTTGTATTGGTAAGTTCAACATAGATAATGGAAAAAGAACAGCATGCG
TAGATCCGTTTACTGATGTTAAACTACTTTTCAACGACTTTCAACAATAC
ACGACTGTCGCTTTTGCTAGTGCCGGTGCTTTAATCAATACCGGCATAAT
AATACTTTTTGTCATCAAACGAGAAACTCCAATTGTTCGTTCATCTGACA
AAACATTGTCCTTCTTACATCTCACCTCCTTGTTAGGCGTATTCTTTGGA
ATAAATTTTCTATACAATCTGCCTTATCTTGAAGTAGAAACATGTATTGG
AAGAAACTTAATCTACAGTGTCACCTACACATTCCATGTGGCTTGCCTCT
acacaaaatcacaaaaattggTCACTGCATTTTCATCGAATATCCGACTT
AGTGCCGGCGTTGTTCGTAACACATTTCTGACTCAGATTTCAACAATCAT
CATTGTGGGCATTTCTTTAAATGGCATCTTATTTATTTCATATGTACAAA
CAGAACCGAGGCTTATCTTCCTGGAAGATAGCACAACGATGACTAGAAAC
CATTTCTGCAACacacattttcatcaaaatatacaAATCTTACTTCTAAC
GTCCGCCCAACTAACGTGTTCAGCTCAAGCTTATCGCTGCCGTAAATTAC
CAGATTTTATGAACGAGGCAATGTCCTTTGTTTACACTATTTTGATTACA
TCAGTGTCATTTGGCGTCAGTTTCCCCGTGTCGTATTTCCGACAAGATCC
GTTGGATAAAGAGTTTGTCGGTGCTTCAGTTTTATTGATCAATTGTTATG
TGACTTTGTTGTTAATGTACGGCAAGAAATCCTTTATCATGCTCtttcaa
ccgaaaaaaaacacCAGAGAATATTTCCACAGGAAGAGGATGGAACACAC
TGGATGCCATTCTTGAGAGAACTAAAATCTTCTTCAATTAGATAGAAAAA
GTCGTGGATTTAACGTGAATAGCCTAGTGATCGAGGACTTTTAGGCaatc
tttcgattgttttcacaggCTCCATAGTCAGCAAGCCCGACTATAATGAG
AGCTGACTAAACTTGAGTTTGACATACGGATTTAGAATGAAATATGACAT
Coding sequence (CDS) from alignment at sc0000274:182576..184425 >TCONS_00017768 ID=TCONS_00017768|Name=TCONS_00017768|organism=Clytia hemisphaerica|type=CDS|length=1665bp|location=Sequence derived from alignment at sc0000274:182576..184425 (Clytia hemisphaerica)
TATGATATCTATTACAACAAAACTTATGATGTCTTAAAGAAGACAAGCAA
GTTTTGTTTGAGACGAAAGACAATGACATTGGAATGGGATAATTTTCTCA
CATATGAAAATACTCAAAAAGTATTCACAGAGCATATTAAACCTTTTCTG
AATAACAGTGCGGTTCGAAAATCCGTTATTTTATTCTTTGGCGCACCGTC
AAAAACTCGAGAAGTTGCAAAACTAATGAGATACAATgactccattttgg
ctgatcgAATATTCCTGTTCCAAGATATAGGCCATTTATCAGGTGACAAT
tcaaacataattaaattgtATTATGCAAAGAGGAGTGCATTACAGTACAT
AAGAAGTATTAATGACTATACCATTTCCAATTTGGAAGATAGCATTTATA
AAATACTGACCGAAGTAAAACGAGCTGTTTCATTACAACCAACACACAGT
GGTTTACTTCATGAGGTCTACCGATATAATATAAAGAGAGCCTATCAGCT
AAACTATATCATCCCTGCAGTAAAGCAGATTTGGCCTGAAGAAAACATTC
CATTAGAATCAGAAAAGTATCTAAAAAGTGTCAAATTTGATCTAGCTCAC
TGCCAGCCGGATCTGACATGCGCGCCAGGTCACCACAAACAATATGGAAT
TGTTAATTTTACTCCACATGCAGACGAAGAATATTCATTCAGATGTGACT
TTTGTCCTTTGAATACTATCAAAATTGGGTTTGGCGATGGCCCATGCCTG
CCTTGTATTGGTAAGTTCAACATAGATAATGGAAAAAGAACAGCATGCGT
AGATCCGTTTACTGATGTTAAACTACTTTTCAACGACTTTCAACAATACA
CGACTGTCGCTTTTGCTAGTGCCGGTGCTTTAATCAATACCGGCATAATA
ATACTTTTTGTCATCAAACGAGAAACTCCAATTGTTCGTTCATCTGACAA
AACATTGTCCTTCTTACATCTCACCTCCTTGTTAGGCGTATTCTTTGGAA
TAAATTTTCTATACAATCTGCCTTATCTTGAAGTAGAAACATGTATTGGA
AGAAACTTAATCTACAGTGTCACCTACACATTCCATGTGGCTTGCCTCTa
cacaaaatcacaaaaattggTCACTGCATTTTCATCGAATATCCGACTTA
GTGCCGGCGTTGTTCGTAACACATTTCTGACTCAGATTTCAACAATCATC
ATTGTGGGCATTTCTTTAAATGGCATCTTATTTATTTCATATGTACAAAC
AGAACCGAGGCTTATCTTCCTGGAAGATAGCACAACGATGACTAGAAACC
ATTTCTGCAACacacattttcatcaaaatatacaAATCTTACTTCTAACG
TCCGCCCAACTAACGTGTTCAGCTCAAGCTTATCGCTGCCGTAAATTACC
AGATTTTATGAACGAGGCAATGTCCTTTGTTTACACTATTTTGATTACAT
CAGTGTCATTTGGCGTCAGTTTCCCCGTGTCGTATTTCCGACAAGATCCG
TTGGATAAAGAGTTTGTCGGTGCTTCAGTTTTATTGATCAATTGTTATGT
GACTTTGTTGTTAATGTACGGCAAGAAATCCTTTATCATGCTCtttcaac
cgaaaaaaaacacCAGAGAATATTTCCACAGGAAGAGGATGGAACACACT
GGATGCCATTCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017768-exon-sc0000274-1491911889:182576..184425 | TCONS_00017768-exon-sc0000274-1491911889:182576..184425 | Clytia hemisphaerica | exon |
| TCONS_00017768-exon-sc0000274-1510915933:182576..184425 | TCONS_00017768-exon-sc0000274-1510915933:182576..184425 | Clytia hemisphaerica | exon |
| TCONS_00017768-exon-sc0000274-1575043694:182576..184425 | TCONS_00017768-exon-sc0000274-1575043694:182576..184425 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000274 | supercontig | sc0000274:182576..184425 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|
