TCONS_00017711 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017711
Unique NameTCONS_00017711
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length597

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017711 ID=TCONS_00017711|Name=TCONS_00017711|organism=Clytia hemisphaerica|type=transcript|length=597bp
TTGAAGGGGtgcaaaaaatctaaataaagactCGCGTTGTTAATTTGCGT
CAATCTTCATCAGATACAAGTAACTCTTGCAATTCTTTGACTATATCTCG
ATAGTAAAGGATCTTTGAATTATTTGAAGATTTCTTCGAAGACAAACGAA
AACATCCcacttctttttctttcttcatctcattttcaaagtaaacatCA
ATTCCATTCACAAGGTTGACAAGTTTTTGTGCACGTTTCTGATAAGAGGA
AACGAACTGGTTACAAAGTtccaatattttcttttgtttatgaaCCGTTC
TTGCAAGAGATTCAATCCTTTCTGCGTcttcctttattttctggttagCT
TTGCTACATAACTTTGTCAAATCTTCAATCTGTGGAATATAGTTTCGGTC
AATTTCTTCTAAAACGTCTTGTTGGCCGCCAAGCTGTTGCTCTCCTTTGT
CTCTCCTGTTCTTTTCTGATTCTTCTTTTTCGAGGAGTagaaaacattct
ttcaaacctttttgaatTTCTTCGATTTCTTTGATCTGAATGACACAACA
ACAAGATTCACTAGACTTCTCTTCAAGCACGCAATTCATAATTGAAC
Run BLAST on NCBI

protein sequence of TCONS_00017711-protein

>TCONS_00017711-protein ID=TCONS_00017711-protein|Name=TCONS_00017711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
SIMNCVLEEKSSESCCCVIQIKEIEEIQKGLKECFLLLEKEESEKNRRDK
GEQQLGGQQDVLEEIDRNYIPQIEDLTKLCSKANQKIKEDAERIESLART
VHKQKKILELCNQFVSSYQKRAQKLVNLVNGIDVYFENEMKKEKEVGCFR
LSSKKSSNNSKILYYRDIVKELQELLVSDED
Run BLAST on NCBI

transcript from alignment at sc0000273:72276..72872

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017711 ID=TCONS_00017711|Name=TCONS_00017711|organism=Clytia hemisphaerica|type=transcript|length=597bp|location=Sequence derived from alignment at sc0000273:72276..72872 (Clytia hemisphaerica)
GTTCAATTATGAATTGCGTGCTTGAAGAGAAGTCTAGTGAATCTTGTTGT
TGTGTCATTCAGATCAAAGAAATCGAAGAAattcaaaaaggtttgaaaga
atgttttctACTCCTCGAAAAAGAAGAATCAGAAAAGAACAGGAGAGACA
AAGGAGAGCAACAGCTTGGCGGCCAACAAGACGTTTTAGAAGAAATTGAC
CGAAACTATATTCCACAGATTGAAGATTTGACAAAGTTATGTAGCAAAGc
taaccagaaaataaaggaagACGCAGAAAGGATTGAATCTCTTGCAAGAA
CGGttcataaacaaaagaaaatattggaACTTTGTAACCAGTTCGTTTCC
TCTTATCAGAAACGTGCACAAAAACTTGTCAACCTTGTGAATGGAATTGa
tgtttactttgaaaatgagatgaagaaagaaaaagaagtgGGATGTTTTC
GTTTGTCTTCGAAGAAATCTTCAAATAATTCAAAGATCCTTTACTATCGA
GATATAGTCAAAGAATTGCAAGAGTTACTTGTATCTGATGAAGATTGACG
CAAATTAACAACGCGagtctttatttagattttttgcaCCCCTTCAA

Coding sequence (CDS) from alignment at sc0000273:72276..72872

>TCONS_00017711 ID=TCONS_00017711|Name=TCONS_00017711|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at sc0000273:72276..72872 (Clytia hemisphaerica)
TCAATTATGAATTGCGTGCTTGAAGAGAAGTCTAGTGAATCTTGTTGTTG
TGTCATTCAGATCAAAGAAATCGAAGAAattcaaaaaggtttgaaagaat
gttttctACTCCTCGAAAAAGAAGAATCAGAAAAGAACAGGAGAGACAAA
GGAGAGCAACAGCTTGGCGGCCAACAAGACGTTTTAGAAGAAATTGACCG
AAACTATATTCCACAGATTGAAGATTTGACAAAGTTATGTAGCAAAGcta
accagaaaataaaggaagACGCAGAAAGGATTGAATCTCTTGCAAGAACG
GttcataaacaaaagaaaatattggaACTTTGTAACCAGTTCGTTTCCTC
TTATCAGAAACGTGCACAAAAACTTGTCAACCTTGTGAATGGAATTGatg
tttactttgaaaatgagatgaagaaagaaaaagaagtgGGATGTTTTCGT
TTGTCTTCGAAGAAATCTTCAAATAATTCAAAGATCCTTTACTATCGAGA
TATAGTCAAAGAATTGCAAGAGTTACTTGTATCTGATGAAGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009911XLOC_009911Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017711-proteinTCONS_00017711-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017711-exon-sc0000273-1491911889:72276..72872TCONS_00017711-exon-sc0000273-1491911889:72276..72872Clytia hemisphaericaexon
TCONS_00017711-exon-sc0000273-1510915933:72276..72872TCONS_00017711-exon-sc0000273-1510915933:72276..72872Clytia hemisphaericaexon
TCONS_00017711-exon-sc0000273-1575043694:72276..72872TCONS_00017711-exon-sc0000273-1575043694:72276..72872Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000273supercontigsc0000273:72276..72872 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.10353	0	0	0.19488	0	0	0	0.0954421	0	0	0	0	0.0519212	0	0.0686418	0	0	0	0	0	0	0.0953152	2.55248	3.06658	0	0	0.202977	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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