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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017670 ID=TCONS_00017670|Name=TCONS_00017670|organism=Clytia hemisphaerica|type=transcript|length=853bp
gtaaaatataaagaaaattgaagaaggAAAAATGAGACTATTAGTTCTTT
TAGCAGGTTGCATTTTCATCTCAAGTACATTTGCACAACGATGTAAACAC
CCTGGTGATCGATTACGTGATGCCAGAAGATGCGATGCATTTTTCGTTTG
TGAAACTGGTGGACGTAAGACCAGAATGTTGTGCCCTAAAGCACCCGTAG
GCTCTCCTTTGAGTAAAGGAGAAGATAGGCTCAGATTCAATGCAGCAAAA
AAGGTTTGCGATTGGCCTGGTAATGTTGATTGTAACGGAAAAACGACCCC
AACCAAGAAAACACGGACTACCAAAAAGgtgacaacaacaacaaagaagC
CAAGACCAATAACAACGCCAAAACCCGTCATCGATGACAtcccaaagaaa
caaaaagtctGCTTCAAAGCTAAAGGTCAAAGTCCTGGTACCTTCCGTGT
ACGTCCTGGACACATCACGTCAATCAAGATCACGCATCAACGTGGTCGTG
TAACGTGTGATCTCAACACTCGTGGTACGTACAGTTATTTCGGATGCTCC
AAACTTTTCGATGGTTATTTAGCTATGGTCATCGTGGATAACAAAAACAA
AgtaattttcccaccacgcgaCATTGTCAAGGTCAATAAATGGGGATTCT
ACATGTGGGAGGATGAAAATGGCGATTATTACAAACCAACCGACAAACGA
TTGACCTTCAACTTCGACAAACCGGTCAAAGTACACAGAGATGCAGAAGA
ATACACACTATGGTATGGTGAAGATTTCTTAGGTCTCTCAGAAGCAAGTG
ATAATGATGGTGAAGTCTGCACCAGAGTTGAAGTCCATTACAAATAATTT
TCC Run BLAST on NCBI protein sequence of TCONS_00017670-protein >TCONS_00017670-protein ID=TCONS_00017670-protein|Name=TCONS_00017670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MRLLVLLAGCIFISSTFAQRCKHPGDRLRDARRCDAFFVCETGGRKTRML
CPKAPVGSPLSKGEDRLRFNAAKKVCDWPGNVDCNGKTTPTKKTRTTKKV
TTTTKKPRPITTPKPVIDDIPKKQKVCFKAKGQSPGTFRVRPGHITSIKI
THQRGRVTCDLNTRGTYSYFGCSKLFDGYLAMVIVDNKNKVIFPPRDIVK
VNKWGFYMWEDENGDYYKPTDKRLTFNFDKPVKVHRDAEEYTLWYGEDFL
GLSEASDNDGEVCTRVEVHYK Run BLAST on NCBI transcript from alignment at sc0000273:98948..102151+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017670 ID=TCONS_00017670|Name=TCONS_00017670|organism=Clytia hemisphaerica|type=transcript|length=3204bp|location=Sequence derived from alignment at sc0000273:98948..102151+ (Clytia hemisphaerica)
gtaaaatataaagaaaattgaagaaggAAAAATGAGACTATTAGTTCTTT
TAGCAGGTAAAGTATTCTGATAATTGagaataaattattttaataagATA
ATAGTTTCAATTCTTAATAGGATCAATTCTTTCATTAGTTATTATCCCGG
GGAACATGCCGGGAAcatgccgctggagtttgaaatgtggaccctgtcag
atatgaatttttggtgAAATTGACCCTGTCAgtacgaaaatttgaaaatt
tttgaaaaaacgtccCCGTCCCCGATTTTGCCTTAGTGCACCCCGGGTTA
TTATCATATCTTACTCCAGAGTAATCGAACTTTTACcctcaaattccaat
aaaaagtgTCCTATCCTACAATGCTTAACGCTGTAGAAAGCCTGCCAGAA
AGTATTTACTTCATATTCGCATAAGGGAAAGAGGCTGGTATGCATATAGA
GTACAGTAGTTTAaccaaatctgaaaaaaatctcCTTTCTTTTTCAGGTT
GCATTTTCATCTCAAGTACATTTGCACAACGTAAGTTCACTTCATCATTA
ACATTGGTCAATTATTGGCAACGCAATTATTCATCGCTTAAACGGAGAAA
GAAACCTTCTTTATTTCACTCAACAAAAAACTCTTCAATTCCATTCCATA
AGACCATAAAACGTTGCCTTTTGTATCTTATTCAGTCAAATGGTCACAAT
GTtgtttataagcattgcacatatctaggctcagatatggcaaTACCTTA
TAAGGGGAACTTATTtaggcgggaactaattttggcaaattcggcgaatt
tagacaaaattcgttaaaattagttcaagccaaaatttaatattttgctc
acttgccaaaataagttctcaccaaaatcaaattatttggtattttgcct
aaataacttCTTGACTTGACacaaaaaagctttaaataaggcaaaataga
acagatttatgctgtcattcgccaaaattagtttccgccaaaattaaaaa
aaattcatcaatcgccaaattaagttctcgccaaaatttaaaattttcag
gatttctgcCGCTTGTAttaattagttcccgccaaaataagttcccttaa
agtaatttaagcatatgctaagcattacttgagcctaaaATTTCTGATTT
TGGCCGTGTTTGGCTTGAATTTTACGAAATTTCCCTAAAACTTTGCTTTA
GAATATATCTAGGCAtccttcaagcatttttcagcctagCCAATCTCTCG
ATCTAAGCATATCACATGACgcagtttttggatttttgtatgcaTATAAA
AAATGTAACTTAATAAACACTTCCGTGGATAAAAAAGCATTGGTTTTTAA
CTCAAACTTGTTTTATATCCTTTTTTCAGGATGTAAACACCCTGGTGATC
GATTACGTGATCCCAGAAGATGCGATGCATTTTTCATTTGTGAAACTGGT
GGACGTAAGACCAGAATGTTGTGCCCTAAAGCACCTGTAAGCTCTCCTTT
GAGTAAAGGAGAAGATCGGCTCAGATTCAATGCAGCAAAAAAGGTTTGTG
ATTGGCCTGGTAATGTTGATTGTAACGGAAAAACGACCCCAACTAAGAAA
ACACCGACTACAAAGAAGGTCACAACCACcactacaacaacaacaaagaa
gCCAAGACCAATAACAACGCCAAAACCCGTCATCGATGACAtcccaaaga
aacaaaaagtctGCTTCAAAGCTAAAGGTCAAAGTCCTGGTACCTTCCGT
GTACGTCCTGGACACATCACGTCAATCAAGATCACGCATCAACGTGGTCG
TGTAACGTGTGATCTCAACACTCGTGGTACGTACAGTTATTTCGGATGCT
CCAAACTTTTCGATGGTTATTTAGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTAAGTTCTCACCAAAATCAAATTCTTtgg
tattttgcctaaataacttCTTGACTTGACacaaaaaagctttaaataag
gcaaaatagaacagatttatgctgccattcgccaaaattagtttccgcta
aaatcaaaaaacaattaaTCAATCGGCAaattaagttctcgccaaaattt
aaaattttcaggatttttgccgctcggaaaaattagttcctgccaaaata
agttcccttaaagtaatttaagcatatgctaagcattacATGAGTCTAAA
ATTTCTGATTTTGGCCGTGTTTGGCTTGAATTTTACAAAATATCCCTAAA
ACTTTGCTTTAGAATATATCTAGGCAtccttcaagcatttttcagcctta
ccAATCTCTCGATCTAAGCATATCACATGACGcagcttttggatttttgt
atgcaTATAAAAAATGTAACTTAATAAACACTTCCGCGGATCAAACAGCA
TTGGTTTTTAACTCAAACCTGTTTTATATCCTTATTTCAGGATGTAAACA
CCCTGGTGATCGATTACGTGATGCCAGAAGATGCGATGCATTTTTCGTTT
GTGAAACTGGTGGACGTAAGACCAGAATGTTGTGCCCTAAAGCACCCGTA
GGCTCTCCTTTGAGTAAAGGAGAAGATAGGCTCAGATTCAATGCAGCAAA
AAAGGTTTGCGATTGGCCTGGTAATGTTGATTGTAACGGAAAAACGACCC
CAACCAAGAAAACACGGACTACCAAAAAGgtgacaacaacaacaaagaag
CCAAGACCAATAACAACGCCAAAACCCGTCATCGATGACAtcccaaagaa
acaaaaagtctGCTTCAAAGCTAAAGGTCAAAGTCCTGGTACCTTCCGTG
TACGTCCTGGACACATCACGTCAATCAAGATCACGCATCAACGTGGTCGT
GTAACGTGTGATCTCAACACTCGTGGTACGTACAGTTATTTCGGATGCTC
CAAACTTTTCGATGGTTATTTAGCTATGGTCATCGTGGATAACAAAAACA
AAgtaattttcccaccacgcgaCATTGTCAAGGTCAATAAATGGGGATTC
TACATGTGGGAGGATGAAAATGGCGATTATTACAAACCAACCGACAAACG
ATTGACCTTCAACTTCGACAAACCGGTCAAAGTACACAGAGATGCAGAAG
AATACACACTATGGTATGGTGAAGATTTCTTAGGTCTCTCAGAAGCAAGT
GATAATGATGGTGAAGTCTGCACCAGAGTTGAAGTCCATTACAAATAATT
TTCC Coding sequence (CDS) from alignment at sc0000273:98948..102151+ >TCONS_00017670 ID=TCONS_00017670|Name=TCONS_00017670|organism=Clytia hemisphaerica|type=CDS|length=2448bp|location=Sequence derived from alignment at sc0000273:98948..102151+ (Clytia hemisphaerica)
ATGAGACTATTAGTTCTTTTAGCAGGTTGCATTTTCATCTCAAGTACATT
TGCACAACGATGTAAACACCCTGGTGATCGATTACGTGATGCCAGAAGAT
GCGATGCATTTTTCGTTTGTGAAACTGGTGGACGTAAGACCAGAATGTTG
TGCCCTAAAGCACCCGTAGGCTCTCCTTTGAGTAAAGGAGAAGATAGGCT
CAGATTCAATGCAGCAAAAAAGGTTTGCGATTGGCCTGGTAATGTTGATT
GTAACGGAAAAACGACCCCAACCAAGAAAACACGGACTACCAAAAAGgtg
acaacaacaacaaagaagCCAAGACCAATAACAACGCCAAAACCCGTCAT
CGATGACAtcccaaagaaacaaaaagtctGCTTCAAAGCTAAAGGTCAAA
GTCCTGGTACCTTCCGTGTACGTCCTGGACACATCACGTCAATCAAGATC
ACGCATCAACGTGGTCGTGTAACGTGTGATCTCAACACTCGTGGTACGTA
CAGTTATTTCGGATGCTCCAAACTTTTCGATGGTTATTTAGCTATGGTCA
TCGTGGATAACAAAAACAAAgtaattttcccaccacgcgaCATTGTCAAG
GTCAATAAATGGGGATTCTACATGTGGGAGGATGAAAATGGCGATTATTA
CAAACCAACCGACAAACGATTGACCTTCAACTTCGACAAACCGGTCAAAG
TACACAGAGATGCAGAAGAATACACACTATGGTATGGTGAAGATTTCTTA
GGTCTCTCAGAAGCAAGTGATAATGATGGTGAAGTCTGCACCAGAGTTGA
AGTCCATTACAAATAAATGAGACTATTAGTTCTTTTAGCAGGTTGCATTT
TCATCTCAAGTACATTTGCACAACGATGTAAACACCCTGGTGATCGATTA
CGTGATGCCAGAAGATGCGATGCATTTTTCGTTTGTGAAACTGGTGGACG
TAAGACCAGAATGTTGTGCCCTAAAGCACCCGTAGGCTCTCCTTTGAGTA
AAGGAGAAGATAGGCTCAGATTCAATGCAGCAAAAAAGGTTTGCGATTGG
CCTGGTAATGTTGATTGTAACGGAAAAACGACCCCAACCAAGAAAACACG
GACTACCAAAAAGgtgacaacaacaacaaagaagCCAAGACCAATAACAA
CGCCAAAACCCGTCATCGATGACAtcccaaagaaacaaaaagtctGCTTC
AAAGCTAAAGGTCAAAGTCCTGGTACCTTCCGTGTACGTCCTGGACACAT
CACGTCAATCAAGATCACGCATCAACGTGGTCGTGTAACGTGTGATCTCA
ACACTCGTGGTACGTACAGTTATTTCGGATGCTCCAAACTTTTCGATGGT
TATTTAGCTATGGTCATCGTGGATAACAAAAACAAAgtaattttcccacc
acgcgaCATTGTCAAGGTCAATAAATGGGGATTCTACATGTGGGAGGATG
AAAATGGCGATTATTACAAACCAACCGACAAACGATTGACCTTCAACTTC
GACAAACCGGTCAAAGTACACAGAGATGCAGAAGAATACACACTATGGTA
TGGTGAAGATTTCTTAGGTCTCTCAGAAGCAAGTGATAATGATGGTGAAG
TCTGCACCAGAGTTGAAGTCCATTACAAATAAATGAGACTATTAGTTCTT
TTAGCAGGTTGCATTTTCATCTCAAGTACATTTGCACAACGATGTAAACA
CCCTGGTGATCGATTACGTGATGCCAGAAGATGCGATGCATTTTTCGTTT
GTGAAACTGGTGGACGTAAGACCAGAATGTTGTGCCCTAAAGCACCCGTA
GGCTCTCCTTTGAGTAAAGGAGAAGATAGGCTCAGATTCAATGCAGCAAA
AAAGGTTTGCGATTGGCCTGGTAATGTTGATTGTAACGGAAAAACGACCC
CAACCAAGAAAACACGGACTACCAAAAAGgtgacaacaacaacaaagaag
CCAAGACCAATAACAACGCCAAAACCCGTCATCGATGACAtcccaaagaa
acaaaaagtctGCTTCAAAGCTAAAGGTCAAAGTCCTGGTACCTTCCGTG
TACGTCCTGGACACATCACGTCAATCAAGATCACGCATCAACGTGGTCGT
GTAACGTGTGATCTCAACACTCGTGGTACGTACAGTTATTTCGGATGCTC
CAAACTTTTCGATGGTTATTTAGCTATGGTCATCGTGGATAACAAAAACA
AAgtaattttcccaccacgcgaCATTGTCAAGGTCAATAAATGGGGATTC
TACATGTGGGAGGATGAAAATGGCGATTATTACAAACCAACCGACAAACG
ATTGACCTTCAACTTCGACAAACCGGTCAAAGTACACAGAGATGCAGAAG
AATACACACTATGGTATGGTGAAGATTTCTTAGGTCTCTCAGAAGCAAGT
GATAATGATGGTGAAGTCTGCACCAGAGTTGAAGTCCATTACAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017670-exon-sc0000273-1491911889:98948..99003 | TCONS_00017670-exon-sc0000273-1491911889:98948..99003 | Clytia hemisphaerica | exon |
| TCONS_00017670-exon-sc0000273-1510915933:98948..99003 | TCONS_00017670-exon-sc0000273-1510915933:98948..99003 | Clytia hemisphaerica | exon |
| TCONS_00017670-exon-sc0000273-1575043694:98948..99003 | TCONS_00017670-exon-sc0000273-1575043694:98948..99003 | Clytia hemisphaerica | exon |
| TCONS_00017670-exon-sc0000273-1491911889:99445..99477 | TCONS_00017670-exon-sc0000273-1491911889:99445..99477 | Clytia hemisphaerica | exon |
| TCONS_00017670-exon-sc0000273-1510915933:99445..99477 | TCONS_00017670-exon-sc0000273-1510915933:99445..99477 | Clytia hemisphaerica | exon |
| TCONS_00017670-exon-sc0000273-1575043694:99445..99477 | TCONS_00017670-exon-sc0000273-1575043694:99445..99477 | Clytia hemisphaerica | exon |
| TCONS_00017670-exon-sc0000273-1491911889:101388..102151 | TCONS_00017670-exon-sc0000273-1491911889:101388..102151 | Clytia hemisphaerica | exon |
| TCONS_00017670-exon-sc0000273-1510915933:101388..102151 | TCONS_00017670-exon-sc0000273-1510915933:101388..102151 | Clytia hemisphaerica | exon |
| TCONS_00017670-exon-sc0000273-1575043694:101388..102151 | TCONS_00017670-exon-sc0000273-1575043694:101388..102151 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000273 | supercontig | sc0000273:98948..102151 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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