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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017669 ID=TCONS_00017669|Name=TCONS_00017669|organism=Clytia hemisphaerica|type=transcript|length=594bp
CAACTTACTGTGgtaaaatataaagaaaattgaagaaggAAAAATGAGAC
TATTAGTTCTTTTAGCAGGTTGCATTTTCATCTCAAGTACATTTGCACAA
CGATGTAAACACCCTGGTGATCGATTACGTGATCCCAGAAGATGCGATGC
ATTTTTCATTTGTGAAACTGGTGGACGTAAGACCAGAATGTTGTGCCCTA
AAGCACCTGTAAGCTCTCCTTTGAGTAAAGGAGAAGATCGGCTCAGATTC
AATGCAGCAAAAAAGGTTTGTGATTGGCCTGGTAATGTTGATTGTAACGG
AAAAACGACCCCAACTAAGAAAACACCGACTACAAAGAAGGTCACAACCA
CcactacaacaacaacaaagaagCCAAGACCAATAACAACGCCAAAACCC
GTCATCGATGACAtcccaaagaaacaaaaagtctGCTTCAAAGCTAAAGG
TCAAAGTCCTGGTACCTTCCGTGTACGTCCTGGACACATCACGTCAATCA
AGATCACGCATCAACGTGGTCGTGTAACGTGTGATCTCAACACTCGTGGT
ACGTACAGTTATTTCGGATGCTCCAAACTTTTCGATGGTTATTT Run BLAST on NCBI transcript from alignment at sc0000273:98936..100819+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017669 ID=TCONS_00017669|Name=TCONS_00017669|organism=Clytia hemisphaerica|type=transcript|length=1884bp|location=Sequence derived from alignment at sc0000273:98936..100819+ (Clytia hemisphaerica)
CAACTTACTGTGgtaaaatataaagaaaattgaagaaggAAAAATGAGAC
TATTAGTTCTTTTAGCAGGTAAAGTATTCTGATAATTGagaataaattat
tttaataagATAATAGTTTCAATTCTTAATAGGATCAATTCTTTCATTAG
TTATTATCCCGGGGAACATGCCGGGAAcatgccgctggagtttgaaatgt
ggaccctgtcagatatgaatttttggtgAAATTGACCCTGTCAgtacgaa
aatttgaaaatttttgaaaaaacgtccCCGTCCCCGATTTTGCCTTAGTG
CACCCCGGGTTATTATCATATCTTACTCCAGAGTAATCGAACTTTTACcc
tcaaattccaataaaaagtgTCCTATCCTACAATGCTTAACGCTGTAGAA
AGCCTGCCAGAAAGTATTTACTTCATATTCGCATAAGGGAAAGAGGCTGG
TATGCATATAGAGTACAGTAGTTTAaccaaatctgaaaaaaatctcCTTT
CTTTTTCAGGTTGCATTTTCATCTCAAGTACATTTGCACAACGTAAGTTC
ACTTCATCATTAACATTGGTCAATTATTGGCAACGCAATTATTCATCGCT
TAAACGGAGAAAGAAACCTTCTTTATTTCACTCAACAAAAAACTCTTCAA
TTCCATTCCATAAGACCATAAAACGTTGCCTTTTGTATCTTATTCAGTCA
AATGGTCACAATGTtgtttataagcattgcacatatctaggctcagatat
ggcaaTACCTTATAAGGGGAACTTATTtaggcgggaactaattttggcaa
attcggcgaatttagacaaaattcgttaaaattagttcaagccaaaattt
aatattttgctcacttgccaaaataagttctcaccaaaatcaaattattt
ggtattttgcctaaataacttCTTGACTTGACacaaaaaagctttaaata
aggcaaaatagaacagatttatgctgtcattcgccaaaattagtttccgc
caaaattaaaaaaaattcatcaatcgccaaattaagttctcgccaaaatt
taaaattttcaggatttctgcCGCTTGTAttaattagttcccgccaaaat
aagttcccttaaagtaatttaagcatatgctaagcattacttgagcctaa
aATTTCTGATTTTGGCCGTGTTTGGCTTGAATTTTACGAAATTTCCCTAA
AACTTTGCTTTAGAATATATCTAGGCAtccttcaagcatttttcagccta
gCCAATCTCTCGATCTAAGCATATCACATGACgcagtttttggatttttg
tatgcaTATAAAAAATGTAACTTAATAAACACTTCCGTGGATAAAAAAGC
ATTGGTTTTTAACTCAAACTTGTTTTATATCCTTTTTTCAGGATGTAAAC
ACCCTGGTGATCGATTACGTGATCCCAGAAGATGCGATGCATTTTTCATT
TGTGAAACTGGTGGACGTAAGACCAGAATGTTGTGCCCTAAAGCACCTGT
AAGCTCTCCTTTGAGTAAAGGAGAAGATCGGCTCAGATTCAATGCAGCAA
AAAAGGTTTGTGATTGGCCTGGTAATGTTGATTGTAACGGAAAAACGACC
CCAACTAAGAAAACACCGACTACAAAGAAGGTCACAACCACcactacaac
aacaacaaagaagCCAAGACCAATAACAACGCCAAAACCCGTCATCGATG
ACAtcccaaagaaacaaaaagtctGCTTCAAAGCTAAAGGTCAAAGTCCT
GGTACCTTCCGTGTACGTCCTGGACACATCACGTCAATCAAGATCACGCA
TCAACGTGGTCGTGTAACGTGTGATCTCAACACTCGTGGTACGTACAGTT
ATTTCGGATGCTCCAAACTTTTCGATGGTTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017669-exon-sc0000273-1491911889:98936..99003 | TCONS_00017669-exon-sc0000273-1491911889:98936..99003 | Clytia hemisphaerica | exon |
| TCONS_00017669-exon-sc0000273-1510915933:98936..99003 | TCONS_00017669-exon-sc0000273-1510915933:98936..99003 | Clytia hemisphaerica | exon |
| TCONS_00017669-exon-sc0000273-1575043694:98936..99003 | TCONS_00017669-exon-sc0000273-1575043694:98936..99003 | Clytia hemisphaerica | exon |
| TCONS_00017669-exon-sc0000273-1491911889:99445..99477 | TCONS_00017669-exon-sc0000273-1491911889:99445..99477 | Clytia hemisphaerica | exon |
| TCONS_00017669-exon-sc0000273-1510915933:99445..99477 | TCONS_00017669-exon-sc0000273-1510915933:99445..99477 | Clytia hemisphaerica | exon |
| TCONS_00017669-exon-sc0000273-1575043694:99445..99477 | TCONS_00017669-exon-sc0000273-1575043694:99445..99477 | Clytia hemisphaerica | exon |
| TCONS_00017669-exon-sc0000273-1491911889:100327..100819 | TCONS_00017669-exon-sc0000273-1491911889:100327..100819 | Clytia hemisphaerica | exon |
| TCONS_00017669-exon-sc0000273-1510915933:100327..100819 | TCONS_00017669-exon-sc0000273-1510915933:100327..100819 | Clytia hemisphaerica | exon |
| TCONS_00017669-exon-sc0000273-1575043694:100327..100819 | TCONS_00017669-exon-sc0000273-1575043694:100327..100819 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000273 | supercontig | sc0000273:98936..100819 + |
Blast
The following BLAST results are available for this feature:
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