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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017666 ID=TCONS_00017666|Name=TCONS_00017666|organism=Clytia hemisphaerica|type=transcript|length=2319bp
AACTCTCTCAACTTGcaagaagaaaaacgaaaaaagtgtCTTGGTTCAAT
AATCAAGATGATCACAAAATTGTTCATTATCTCTGCTACCATTTGTGTTT
TGGTCCAAGGAAGAAGTCTTTTTTCTGAAGATGGATGCTACTCAAAGAAA
TACTTACCTGCTGAGCGATGTGATCAATACATCGTTTGTGATCATGGTAT
AAAACACATCATGAATTGTCCTAAAGGAACACATTTCAACGCAAAGCTTC
AGGTCTGTGATTGGCCGGCTATTGCTAATTGTGATGGTGATAAAACACAA
CAAGAAACCACCACCGACTATTATGATACTACCACCACCAAAGCTAAGGA
CACAACCACCGACTACTATGATACCACCACCACACAAGCTAAGGACACCA
CCACCGACTATTATGATACCACCACCACCCAAGCTAAAGACACCACCACC
GACTATTATGATACCACTACCACCAAAGCTGAAGACACAACCACCACCTA
CTACGACAGTACTACCACTACTGGTGGAGACACAACTACCGACTATTATG
ATACCACCACCACCAAAGCTGAAGACACCACCACCGACTATTATGATACC
ACCACCACACAAGCTAAGGACACCACCACCGACTATTATGATACCACCAC
CACCCAAGCTAAAGACACCACCACCGACTACTATGATACCACTACCACCA
AAGCTGAAGACACAACCACCACCTACTACGACAGCACTACCACTACTGGT
GGAGACACAACTACCGACTATTATGATACCACCACCACCAAAGCTGAAGA
CACCACCACCGACTATTATGATACCACAACCACCAAAGCTGAAGACACAA
CCACCGAATATTATGATACAACCACCACCCAAACTGAAGACACAACCACC
GACTATNACCACCACCACCAAAGCTGAAGACACCACCACCGACTATTATG
ATACCACAACCACCAAAGCTGAAGACACAACCACCGAATATTATGATACC
ACCACCACCCAAGCTAAAGACACCACCACTAAAGCTGAAGACACAACCAC
TGAATATTATGATACAACCACCACCCAAGCTGAAGACACAACCACCGACT
ATTATGATACCACCACCACACAAGCTAAGGACACCACCACCGACTACTAT
GATACCACCACCACACAAGCTAAAGACACCACCACCGACTATTATGATAC
TACCACAACACAAGCTAAAGACACAACCACCGACTATTATGATACCACCA
CCACACAAGCTAAAGACACCACCACCGACTATTATGATACTACCACAACA
CAAGCTAAAGACACAACCACCGACTATTATGATACCACCACCACACAAGC
TAAGGACACCACCACCGAGTACTATGATACCACCACCACACAAGCTAAGG
ACACCACCACCGACTATTATGATACCACCACCACCAAAGTTGAAGACACC
ACCACCGACTATTATGATACCACCACCACACAAGCTGAAGACACAACAAC
CGACTATTATGATACCACCACCACTCAAGCTAAGGACACCACCACCGACT
ATTATGATACCACCACCACACAAGCTGAAGACACCACAACCGACTATTAT
GATACCACCACCACACAAGCTAAAGACACCACCACCGACTATTATGATAC
CACCACCACCCAAGCTAAGGACACCACCACCGACTATTATGATACCACCA
CCACTGGTGCAGACACAACCACCACTTACTACGATAGCACTACCACCACT
GGTGCAGACACAACCACCACATACTATGACAGTACCACCACTGAGGAGAA
AGATGCTACAACCACCGACTACATCACAACAACAGGCTATTACACTACAT
CAGAAATTTCTGCCACAACTGAACCAACAACCGTATCAGACCTCATCACT
ACCACAGACTATTACGATACCACCACAGATTATTACGATGCTACCACTGA
CTACGCGGTTACCACTGACCTACTAACCGACAAAGAACCAACAACCACAG
AATATGGAACAACAACGGGCTTTACTGAAACCGTTACATACTATGGCAGT
ACTTACCCTACTTACTCTACTGAGGCATATTAGATAGTGGCTCTACTCAT
GCATTGTTAGTAAGAAAAATCACATATCCATTACCAAAAAAAAGTCTACC
CTTTTAAATACACgccttttcttcaaaaagttctttatttaaCGGAACAA
AAAATGGAAGCATAAATGCACAAATTTATTTATTGTATGcaatagaaaaa
tcaaaatattatttatgtatttatttttttcaggatATCTTGTCATATTT
ATTTTGATTAATTAATTAG Run BLAST on NCBI protein sequence of TCONS_00017666-protein >TCONS_00017666-protein ID=TCONS_00017666-protein|Name=TCONS_00017666-protein|organism=Clytia hemisphaerica|type=polypeptide|length=599bp
MVIKHNKKPPPTIMILPPPKLRTQPPTTMIPPPHKLRTPPPTIMIPPPPK
LKTPPPTIMIPLPPKLKTQPPPTTTVLPLLVETQLPTIMIPPPPKLKTPP
PTIMIPPPHKLRTPPPTIMIPPPPKLKTPPPTTMIPLPPKLKTQPPPTTT
ALPLLVETQLPTIMIPPPPKLKTPPPTIMIPQPPKLKTQPPNIMIQPPPK
LKTQPPTXTTTTKAEDTTTDYYDTTTTKAEDTTTEYYDTTTTQAKDTTTK
AEDTTTEYYDTTTTQAEDTTTDYYDTTTTQAKDTTTDYYDTTTTQAKDTT
TDYYDTTTTQAKDTTTDYYDTTTTQAKDTTTDYYDTTTTQAKDTTTDYYD
TTTTQAKDTTTEYYDTTTTQAKDTTTDYYDTTTTKVEDTTTDYYDTTTTQ
AEDTTTDYYDTTTTQAKDTTTDYYDTTTTQAEDTTTDYYDTTTTQAKDTT
TDYYDTTTTQAKDTTTDYYDTTTTGADTTTTYYDSTTTTGADTTTTYYDS
TTTEEKDATTTDYITTTGYYTTSEISATTEPTTVSDLITTTDYYDTTTDY
YDATTDYAVTTDLLTDKEPTTTEYGTTTGFTETVTYYGSTYPTYSTEAY Run BLAST on NCBI transcript from alignment at sc0000273:78595..81168+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017666 ID=TCONS_00017666|Name=TCONS_00017666|organism=Clytia hemisphaerica|type=transcript|length=2574bp|location=Sequence derived from alignment at sc0000273:78595..81168+ (Clytia hemisphaerica)
AACTCTCTCAACTTGcaagaagaaaaacgaaaaaagtgtCTTGGTTCAAT
AATCAAGATGATCACAAAATTGTTCATTATCTCTGGTAAGTTGGCTTGAA
TTTATGATTAAATCACGTCTTACAAACATGTCAAAATGACTCGGTTCTCA
ACGATGAATATACTTTATGGTTAACTTGACCATGAGGTTTACAATAACAG
GAACACTTTACCTTAGCTAGCCTGTTTCTTGATATCATGGATACAAGAGA
AAGGCCTTGGTAAGTAGATTATTAAGATGTGCAACAGTgaatataaacca
aaatttgatttctcactattctttatttttctcccTTCAGCTACCATTTG
TGTTTTGGTCCAAGGAAGAAGTCTTTTTTCTGAAGATGGATGCTACTCAA
AGAAATACTTACCTGCTGAGCGATGTGATCAATACATCGTTTGTGATCAT
GGTATAAAACACATCATGAATTGTCCTAAAGGAACACATTTCAACGCAAA
GCTTCAGGTCTGTGATTGGCCGGCTATTGCTAATTGTGATGGTGATAAAA
CACAACAAGAAACCACCACCGACTATTATGATACTACCACCACCAAAGCT
AAGGACACAACCACCGACTACTATGATACCACCACCACACAAGCTAAGGA
CACCACCACCGACTATTATGATACCACCACCACCCAAGCTAAAGACACCA
CCACCGACTATTATGATACCACTACCACCAAAGCTGAAGACACAACCACC
ACCTACTACGACAGTACTACCACTACTGGTGGAGACACAACTACCGACTA
TTATGATACCACCACCACCAAAGCTGAAGACACCACCACCGACTATTATG
ATACCACCACCACACAAGCTAAGGACACCACCACCGACTATTATGATACC
ACCACCACCCAAGCTAAAGACACCACCACCGACTACTATGATACCACTAC
CACCAAAGCTGAAGACACAACCACCACCTACTACGACAGCACTACCACTA
CTGGTGGAGACACAACTACCGACTATTATGATACCACCACCACCAAAGCT
GAAGACACCACCACCGACTATTATGATACCACAACCACCAAAGCTGAAGA
CACAACCACCGAATATTATGATACAACCACCACCCAAACTGAAGACACAA
CCACCGACTATNACCACCACCACCAAAGCTGAAGACACCACCACCGACTA
TTATGATACCACAACCACCAAAGCTGAAGACACAACCACCGAATATTATG
ATACCACCACCACCCAAGCTAAAGACACCACCACTAAAGCTGAAGACACA
ACCACTGAATATTATGATACAACCACCACCCAAGCTGAAGACACAACCAC
CGACTATTATGATACCACCACCACACAAGCTAAGGACACCACCACCGACT
ACTATGATACCACCACCACACAAGCTAAAGACACCACCACCGACTATTAT
GATACTACCACAACACAAGCTAAAGACACAACCACCGACTATTATGATAC
CACCACCACACAAGCTAAAGACACCACCACCGACTATTATGATACTACCA
CAACACAAGCTAAAGACACAACCACCGACTATTATGATACCACCACCACA
CAAGCTAAGGACACCACCACCGAGTACTATGATACCACCACCACACAAGC
TAAGGACACCACCACCGACTATTATGATACCACCACCACCAAAGTTGAAG
ACACCACCACCGACTATTATGATACCACCACCACACAAGCTGAAGACACA
ACAACCGACTATTATGATACCACCACCACTCAAGCTAAGGACACCACCAC
CGACTATTATGATACCACCACCACACAAGCTGAAGACACCACAACCGACT
ATTATGATACCACCACCACACAAGCTAAAGACACCACCACCGACTATTAT
GATACCACCACCACCCAAGCTAAGGACACCACCACCGACTATTATGATAC
CACCACCACTGGTGCAGACACAACCACCACTTACTACGATAGCACTACCA
CCACTGGTGCAGACACAACCACCACATACTATGACAGTACCACCACTGAG
GAGAAAGATGCTACAACCACCGACTACATCACAACAACAGGCTATTACAC
TACATCAGAAATTTCTGCCACAACTGAACCAACAACCGTATCAGACCTCA
TCACTACCACAGACTATTACGATACCACCACAGATTATTACGATGCTACC
ACTGACTACGCGGTTACCACTGACCTACTAACCGACAAAGAACCAACAAC
CACAGAATATGGAACAACAACGGGCTTTACTGAAACCGTTACATACTATG
GCAGTACTTACCCTACTTACTCTACTGAGGCATATTAGATAGTGGCTCTA
CTCATGCATTGTTAGTAAGAAAAATCACATATCCATTACCAAAAAAAAGT
CTACCCTTTTAAATACACgccttttcttcaaaaagttctttatttaaCGG
AACAAAAAATGGAAGCATAAATGCACAAATTTATTTATTGTATGcaatag
aaaaatcaaaatattatttatgtatttatttttttcaggatATCTTGTCA
TATTTATTTTGATTAATTAATTAG Coding sequence (CDS) from alignment at sc0000273:78595..81168+ >TCONS_00017666 ID=TCONS_00017666|Name=TCONS_00017666|organism=Clytia hemisphaerica|type=CDS|length=1800bp|location=Sequence derived from alignment at sc0000273:78595..81168+ (Clytia hemisphaerica)
ATGGTGATAAAACACAACAAGAAACCACCACCGACTATTATGATACTACC
ACCACCAAAGCTAAGGACACAACCACCGACTACTATGATACCACCACCAC
ACAAGCTAAGGACACCACCACCGACTATTATGATACCACCACCACCCAAG
CTAAAGACACCACCACCGACTATTATGATACCACTACCACCAAAGCTGAA
GACACAACCACCACCTACTACGACAGTACTACCACTACTGGTGGAGACAC
AACTACCGACTATTATGATACCACCACCACCAAAGCTGAAGACACCACCA
CCGACTATTATGATACCACCACCACACAAGCTAAGGACACCACCACCGAC
TATTATGATACCACCACCACCCAAGCTAAAGACACCACCACCGACTACTA
TGATACCACTACCACCAAAGCTGAAGACACAACCACCACCTACTACGACA
GCACTACCACTACTGGTGGAGACACAACTACCGACTATTATGATACCACC
ACCACCAAAGCTGAAGACACCACCACCGACTATTATGATACCACAACCAC
CAAAGCTGAAGACACAACCACCGAATATTATGATACAACCACCACCCAAA
CTGAAGACACAACCACCGACTATNACCACCACCACCAAAGCTGAAGACAC
CACCACCGACTATTATGATACCACAACCACCAAAGCTGAAGACACAACCA
CCGAATATTATGATACCACCACCACCCAAGCTAAAGACACCACCACTAAA
GCTGAAGACACAACCACTGAATATTATGATACAACCACCACCCAAGCTGA
AGACACAACCACCGACTATTATGATACCACCACCACACAAGCTAAGGACA
CCACCACCGACTACTATGATACCACCACCACACAAGCTAAAGACACCACC
ACCGACTATTATGATACTACCACAACACAAGCTAAAGACACAACCACCGA
CTATTATGATACCACCACCACACAAGCTAAAGACACCACCACCGACTATT
ATGATACTACCACAACACAAGCTAAAGACACAACCACCGACTATTATGAT
ACCACCACCACACAAGCTAAGGACACCACCACCGAGTACTATGATACCAC
CACCACACAAGCTAAGGACACCACCACCGACTATTATGATACCACCACCA
CCAAAGTTGAAGACACCACCACCGACTATTATGATACCACCACCACACAA
GCTGAAGACACAACAACCGACTATTATGATACCACCACCACTCAAGCTAA
GGACACCACCACCGACTATTATGATACCACCACCACACAAGCTGAAGACA
CCACAACCGACTATTATGATACCACCACCACACAAGCTAAAGACACCACC
ACCGACTATTATGATACCACCACCACCCAAGCTAAGGACACCACCACCGA
CTATTATGATACCACCACCACTGGTGCAGACACAACCACCACTTACTACG
ATAGCACTACCACCACTGGTGCAGACACAACCACCACATACTATGACAGT
ACCACCACTGAGGAGAAAGATGCTACAACCACCGACTACATCACAACAAC
AGGCTATTACACTACATCAGAAATTTCTGCCACAACTGAACCAACAACCG
TATCAGACCTCATCACTACCACAGACTATTACGATACCACCACAGATTAT
TACGATGCTACCACTGACTACGCGGTTACCACTGACCTACTAACCGACAA
AGAACCAACAACCACAGAATATGGAACAACAACGGGCTTTACTGAAACCG
TTACATACTATGGCAGTACTTACCCTACTTACTCTACTGAGGCATATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017666-exon-sc0000273-1491911889:78595..78679 | TCONS_00017666-exon-sc0000273-1491911889:78595..78679 | Clytia hemisphaerica | exon |
| TCONS_00017666-exon-sc0000273-1510915933:78595..78679 | TCONS_00017666-exon-sc0000273-1510915933:78595..78679 | Clytia hemisphaerica | exon |
| TCONS_00017666-exon-sc0000273-1575043694:78595..78679 | TCONS_00017666-exon-sc0000273-1575043694:78595..78679 | Clytia hemisphaerica | exon |
| TCONS_00017666-exon-sc0000273-1491911889:78935..81168 | TCONS_00017666-exon-sc0000273-1491911889:78935..81168 | Clytia hemisphaerica | exon |
| TCONS_00017666-exon-sc0000273-1510915933:78935..81168 | TCONS_00017666-exon-sc0000273-1510915933:78935..81168 | Clytia hemisphaerica | exon |
| TCONS_00017666-exon-sc0000273-1575043694:78935..81168 | TCONS_00017666-exon-sc0000273-1575043694:78935..81168 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000273 | supercontig | sc0000273:78595..81168 + |
Blast
The following BLAST results are available for this feature:
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