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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017664 ID=TCONS_00017664|Name=TCONS_00017664|organism=Clytia hemisphaerica|type=transcript|length=833bp
ATTAACTTGTTTTGCTTTTCTTAGAACCTTTATTTGTCATCATGTAGTGT
TTCAGAAGAACAAGAAAAGGAGTGcgaatttgtttcatttttttagaata
aaatgaaaaaatgccaaCAGATTTCAATGTCGGTGAAAAGTTTTCTTCCT
TGGATGAACTCTACCAAAAGTTGGAGCAATACAAAGTTGATAACTCAACA
GAGTTATCTATTGATGATTCCAGACTGATTAAATCAGCATGCAAGGGCCA
GCGTTTGGCTGAAGGGGACGAAAGAGAAAAGGCTTTGAAATATTCGGAGT
TAAAGTATGTGTGTGTGGCTAGTGGCACGTGTAAACCTCGTGGGCGTGGT
TTGAGAAAGTCGAGGACTTTGAAGAAAGGATGTCCATTTTACATCCGGTT
CCGGTTGGATAAAGACCGTCAAGCATTGGaagtaaaagatattcaacgTT
CACATAACCACGAACTAAACGCAaatttaTTCCGACACTATCCACGACAA
AGAAAACTGCAAACTATCGTAGAAGCTGACGCCATACAACTGTTGAAGGC
AAAGGCAGACAAAAAAATGGTTAGGTCGAAAATTGCAATTGAAAGCGGTA
AAGTTGTGACCATGAGGGACGTGCACAACCTCGCACAGAAGGCTAAAACC
GATAGCGAGGGGCGGAATAACCTGCAAGACGTTGTCGACTTGTTAAGGAA
CGAATTTGGTAAGGTTATCTCTTTCGAAAAGTGATTTGCTGTCTGCCAGC
AAGGGTTACAACGCCAGTTAACCTAAGGAAGAACGAGAAATCTAATCAAT
CCTCTCAATATTCGAGCTGAGCGTTTTCGCAGC Run BLAST on NCBI protein sequence of TCONS_00017664-protein >TCONS_00017664-protein ID=TCONS_00017664-protein|Name=TCONS_00017664-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MPTDFNVGEKFSSLDELYQKLEQYKVDNSTELSIDDSRLIKSACKGQRLA
EGDEREKALKYSELKYVCVASGTCKPRGRGLRKSRTLKKGCPFYIRFRLD
KDRQALEVKDIQRSHNHELNANLFRHYPRQRKLQTIVEADAIQLLKAKAD
KKMVRSKIAIESGKVVTMRDVHNLAQKAKTDSEGRNNLQDVVDLLRNEFG
KVISFEK Run BLAST on NCBI transcript from alignment at sc0000273:57206..58789+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017664 ID=TCONS_00017664|Name=TCONS_00017664|organism=Clytia hemisphaerica|type=transcript|length=1584bp|location=Sequence derived from alignment at sc0000273:57206..58789+ (Clytia hemisphaerica)
ATTAACTTGTTTTGCTTTTCTTAGAACCTTTATTTGTCATCATGTAGTGT
TTCAGAAGAACAAGAAAAGGAGTGcgaatttgtttcatttttttagaata
aaatgaaaaaatgccaaCAGATTTCAATGTCGGTGAAAAGTTTTCTTCCT
TGGATGAACTCTACCAAAAGTTGGAGCAATACAAAGTTGATAACTCAACA
GAGTTATCTATTGATGATTCCAGACTGATTAAATCAGCATGCAAGGGCCA
GCGTTTGGCTGAAGGGGACGAAAGAGAAAAGGCTTTGAAATATTCGGAGT
TAAAGTATGTGTGTGTGGCTAGTGGCACGTGTAAACCTCGTGGGCGTGGT
TTGAGAAAGTCGAGGTAAACAGTATTTTTTACTCCTTAGATTCAAATCAC
TGAAGCAAAGTTGATCTATCCTTTTATCATTAAACAGACTATAAAGAAAC
AGAAGAATCAGTTATCTTTGTGTCAGTGTAGATCTATAGGTCCTGCAAAG
CAGGAGGTGTTTcctaagattaaaaaaaaactttatctcTAGCTTTTTTG
ACCTCTGAAAAACCAAAATATTCAGTCCCGATTATATGTATTTCCAGAAT
CTATTTTATTGTAACTCCCCAACTGGAAGCCCTAAATAATGGAATGTCTC
tgaattatttcaattttcaaataNaccaaaatctattttattgtaACTCC
CCAACTGGAAGCCCTAAATAATggaattatttcaattttcaaatattata
cTCTTGTATTGTTAATTTAGTCCATTAGTAAAGATTTTTAATTATCCTCT
GTTTTATTTTCTCACAGGACTTTGAAGAAAGGATGTCCATTTTACATCCG
GTTCCGGTTGGATAAAGACCGTCAAGCATTGGaagtaaaagatattcaac
gTTCACATAACCACGAACTAAACGCAGTAAGAAATACACTCCGCTATAAT
TTAGTTATGTATTGTCGTATAAAAAATACAGGTTGTTtgtagaaaaagaa
atatttatgaAGCTGGACCTTTCTTCAGACTTTAAAAGGGAAAAATGATA
CTTTGATATCACAAATTAGAGATAAATTTGGCACCTCTTCGAATTTTCAT
CTACGCATCTTATAGTACAAATATCCAATAAATCATGGACGTTTTTTCTT
ATGGTATACCTTTCGTAATCTCTCAAATATTAAATGGAAGGCTTTCCTTA
CCATAATTattcttgtttttatagaatttaTTCCGACACTATCCACGACA
AAGAAAACTGCAAACTATCGTAGAAGCTGACGCCATACAACTGTTGAAGG
CAAAGGCAGACAAAAAAATGGTTAGGTCGAAAATTGCAATTGAAAGCGGT
AAAGTTGTGACCATGAGGGACGTGCACAACCTCGCACAGAAGGCTAAAAC
CGATAGCGAGGGGCGGAATAACCTGCAAGACGTTGTCGACTTGTTAAGGA
ACGAATTTGGTAAGGTTATCTCTTTCGAAAAGTGATTTGCTGTCTGCCAG
CAAGGGTTACAACGCCAGTTAACCTAAGGAAGAACGAGAAATCTAATCAA
TCCTCTCAATATTCGAGCTGAGCGTTTTCGCAGC Coding sequence (CDS) from alignment at sc0000273:57206..58789+ >TCONS_00017664 ID=TCONS_00017664|Name=TCONS_00017664|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at sc0000273:57206..58789+ (Clytia hemisphaerica)
atgccaaCAGATTTCAATGTCGGTGAAAAGTTTTCTTCCTTGGATGAACT
CTACCAAAAGTTGGAGCAATACAAAGTTGATAACTCAACAGAGTTATCTA
TTGATGATTCCAGACTGATTAAATCAGCATGCAAGGGCCAGCGTTTGGCT
GAAGGGGACGAAAGAGAAAAGGCTTTGAAATATTCGGAGTTAAAGTATGT
GTGTGTGGCTAGTGGCACGTGTAAACCTCGTGGGCGTGGTTTGAGAAAGT
CGAGGACTTTGAAGAAAGGATGTCCATTTTACATCCGGTTCCGGTTGGAT
AAAGACCGTCAAGCATTGGaagtaaaagatattcaacgTTCACATAACCA
CGAACTAAACGCAaatttaTTCCGACACTATCCACGACAAAGAAAACTGC
AAACTATCGTAGAAGCTGACGCCATACAACTGTTGAAGGCAAAGGCAGAC
AAAAAAATGGTTAGGTCGAAAATTGCAATTGAAAGCGGTAAAGTTGTGAC
CATGAGGGACGTGCACAACCTCGCACAGAAGGCTAAAACCGATAGCGAGG
GGCGGAATAACCTGCAAGACGTTGTCGACTTGTTAAGGAACGAATTTGGT
AAGGTTATCTCTTTCGAAAAGTGAatgccaaCAGATTTCAATGTCGGTGA
AAAGTTTTCTTCCTTGGATGAACTCTACCAAAAGTTGGAGCAATACAAAG
TTGATAACTCAACAGAGTTATCTATTGATGATTCCAGACTGATTAAATCA
GCATGCAAGGGCCAGCGTTTGGCTGAAGGGGACGAAAGAGAAAAGGCTTT
GAAATATTCGGAGTTAAAGTATGTGTGTGTGGCTAGTGGCACGTGTAAAC
CTCGTGGGCGTGGTTTGAGAAAGTCGAGGACTTTGAAGAAAGGATGTCCA
TTTTACATCCGGTTCCGGTTGGATAAAGACCGTCAAGCATTGGaagtaaa
agatattcaacgTTCACATAACCACGAACTAAACGCAaatttaTTCCGAC
ACTATCCACGACAAAGAAAACTGCAAACTATCGTAGAAGCTGACGCCATA
CAACTGTTGAAGGCAAAGGCAGACAAAAAAATGGTTAGGTCGAAAATTGC
AATTGAAAGCGGTAAAGTTGTGACCATGAGGGACGTGCACAACCTCGCAC
AGAAGGCTAAAACCGATAGCGAGGGGCGGAATAACCTGCAAGACGTTGTC
GACTTGTTAAGGAACGAATTTGGTAAGGTTATCTCTTTCGAAAAGTGAat
gccaaCAGATTTCAATGTCGGTGAAAAGTTTTCTTCCTTGGATGAACTCT
ACCAAAAGTTGGAGCAATACAAAGTTGATAACTCAACAGAGTTATCTATT
GATGATTCCAGACTGATTAAATCAGCATGCAAGGGCCAGCGTTTGGCTGA
AGGGGACGAAAGAGAAAAGGCTTTGAAATATTCGGAGTTAAAGTATGTGT
GTGTGGCTAGTGGCACGTGTAAACCTCGTGGGCGTGGTTTGAGAAAGTCG
AGGACTTTGAAGAAAGGATGTCCATTTTACATCCGGTTCCGGTTGGATAA
AGACCGTCAAGCATTGGaagtaaaagatattcaacgTTCACATAACCACG
AACTAAACGCAaatttaTTCCGACACTATCCACGACAAAGAAAACTGCAA
ACTATCGTAGAAGCTGACGCCATACAACTGTTGAAGGCAAAGGCAGACAA
AAAAATGGTTAGGTCGAAAATTGCAATTGAAAGCGGTAAAGTTGTGACCA
TGAGGGACGTGCACAACCTCGCACAGAAGGCTAAAACCGATAGCGAGGGG
CGGAATAACCTGCAAGACGTTGTCGACTTGTTAAGGAACGAATTTGGTAA
GGTTATCTCTTTCGAAAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017664-exon-sc0000273-1491911889:57206..57569 | TCONS_00017664-exon-sc0000273-1491911889:57206..57569 | Clytia hemisphaerica | exon |
| TCONS_00017664-exon-sc0000273-1510915933:57206..57569 | TCONS_00017664-exon-sc0000273-1510915933:57206..57569 | Clytia hemisphaerica | exon |
| TCONS_00017664-exon-sc0000273-1575043694:57206..57569 | TCONS_00017664-exon-sc0000273-1575043694:57206..57569 | Clytia hemisphaerica | exon |
| TCONS_00017664-exon-sc0000273-1491911889:58023..58131 | TCONS_00017664-exon-sc0000273-1491911889:58023..58131 | Clytia hemisphaerica | exon |
| TCONS_00017664-exon-sc0000273-1510915933:58023..58131 | TCONS_00017664-exon-sc0000273-1510915933:58023..58131 | Clytia hemisphaerica | exon |
| TCONS_00017664-exon-sc0000273-1575043694:58023..58131 | TCONS_00017664-exon-sc0000273-1575043694:58023..58131 | Clytia hemisphaerica | exon |
| TCONS_00017664-exon-sc0000273-1491911889:58430..58789 | TCONS_00017664-exon-sc0000273-1491911889:58430..58789 | Clytia hemisphaerica | exon |
| TCONS_00017664-exon-sc0000273-1510915933:58430..58789 | TCONS_00017664-exon-sc0000273-1510915933:58430..58789 | Clytia hemisphaerica | exon |
| TCONS_00017664-exon-sc0000273-1575043694:58430..58789 | TCONS_00017664-exon-sc0000273-1575043694:58430..58789 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000273 | supercontig | sc0000273:57206..58789 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004330 | FAR1_DNA_bnd_dom |
Blast
The following BLAST results are available for this feature:
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