TCONS_00017657 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017657
Unique NameTCONS_00017657
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length482

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017657 ID=TCONS_00017657|Name=TCONS_00017657|organism=Clytia hemisphaerica|type=transcript|length=482bp
TGTCTACATATGTAATTTTCTACTACATGGTTGTTTGTGACAAAGTCAGG
CTTTACAtcactgaaataaaaaaagatttgttttcaCCAAATTCATCTCA
GAATTTGTGGGAAGACTGGAACCTGAAGTTTTTAAATCAAGATTTGACAC
GGTATTCACAAAATAAGTTGTCAAAATTTTGGCGTTGTGGCTTCATTGTC
TATCACAACCAATGTTTTGAAACCAAATTATTATtagtttaaaaatttcg
gatccTCAAGTTTATGTTTCATTATTGGTTAAACTCTACACGGATAACCA
ACATTTATTTTCTTGCTTTCTCAGCTCGGATTCCTTCCAATGCAAATGTG
AAGTTCCTCAGAAATATTCCTCAGTTATTTATCTTAGGTATTTACCATCA
CTATTATAGTACAATTCCTAGATTATGCAAACCCAACATTAGCCTTTCGT
CCATACGTCATTTTCTTGCAGCTTTTAATTCA
Run BLAST on NCBI

transcript from alignment at sc0000271:331735..332216

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017657 ID=TCONS_00017657|Name=TCONS_00017657|organism=Clytia hemisphaerica|type=transcript|length=482bp|location=Sequence derived from alignment at sc0000271:331735..332216 (Clytia hemisphaerica)
TGAATTAAAAGCTGCAAGAAAATGACGTATGGACGAAAGGCTAATGTTGG
GTTTGCATAATCTAGGAATTGTACTATAATAGTGATGGTAAATACCTAAG
ATAAATAACTGAGGAATATTTCTGAGGAACTTCACATTTGCATTGGAAGG
AATCCGAGCTGAGAAAGCAAGAAAATAAATGTTGGTTATCCGTGTAGAGT
TTAACCAATAATGAAACATAAACTTGAggatccgaaatttttaaactaAT
AATAATTTGGTTTCAAAACATTGGTTGTGATAGACAATGAAGCCACAACG
CCAAAATTTTGACAACTTATTTTGTGAATACCGTGTCAAATCTTGATTTA
AAAACTTCAGGTTCCAGTCTTCCCACAAATTCTGAGATGAATTTGGtgaa
aacaaatctttttttatttcagtgaTGTAAAGCCTGACTTTGTCACAAAC
AACCATGTAGTAGAAAATTACATATGTAGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009874XLOC_009874Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017657-exon-sc0000271-1491911889:331735..332216TCONS_00017657-exon-sc0000271-1491911889:331735..332216Clytia hemisphaericaexon
TCONS_00017657-exon-sc0000271-1510915933:331735..332216TCONS_00017657-exon-sc0000271-1510915933:331735..332216Clytia hemisphaericaexon
TCONS_00017657-exon-sc0000271-1575043694:331735..332216TCONS_00017657-exon-sc0000271-1575043694:331735..332216Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000271supercontigsc0000271:331735..332216 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.51982	0.76036	1.32428	0.719777	0.350503	0.138486	0	0.312832	0.109511	0.271293	0	0.259648	0.172858	0.718059	0.147586	0	0	0	0	0	0.502592	0.36772	0	0	0.139527	0	0.178194	0.380347	0	0.146958
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017657 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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