TCONS_00017635 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017635
Unique NameTCONS_00017635
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1301

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017635 ID=TCONS_00017635|Name=TCONS_00017635|organism=Clytia hemisphaerica|type=transcript|length=1301bp
AGTCCATTCAGCCTttgtaaattatatttttcGTTTAAACGTTAATTTCA
AAAAGGTCCCCATCAGTTTATACTTTTGACTACAACCAAATAGACTATTT
TTTGGGATACAACAGGAGATGGTCGAGAGAAGTTGGTATTAAAgttcttt
gattttgttttgacacTAAAGTGAAAAACGTAAGGCTCCATTTGCGTGAA
GGGAGTGAAGACACAAGATTCGTTGACCCGCTGTAAGAAGAAGAAAGGCG
ACCAAAACGGTGGTGGACCCTCAGAAAGCTTGCTACAGGAGATCAAAGAA
GAAATGGGCGGACCAGATATGATGGATGAACCCGCCTTTAAGCCACCACC
AAAACGAGGCCGACGACAAGCAGTTGCCGCTGAATCTTACGACCCTATGG
CCGATGACGACAAAGACGAGAACGTCATTTTTTACACCAAGACAGACGAA
CAGTTAAAATGTCTACAAGAGGCTGCGTCGAATatcattttctttaagaa
atgcGACAAAGAGCAGCGACAAGTCTTATTTAACGCCATGTTTGAAAAGA
AGGTTACTCAAGGTGAAACCATAATACGTCAAGGAGATGACGGAGATAAT
TTTTACGTCATCGATAAGGGAGAATATGATATTTTCGTTAAAGACTCGAA
TGGTGAAGAAAAGAAAGTCGCCTCTTTGACCGAAGGGTTTTTCGGTGAAT
TAGCTCTTCTATACAACTGTCCACGAAATGCAACGATTGTCTCCGCGTCC
GACTATGGAGTCCTGTGGGGCCTGGATCAGAAAACCTTCCGACAGGTAGT
AGTCAAGGCAACCGCTCGTAAAAGAGCTGTTTTCGAAGAGCTGCTAAAAG
GAGTCTCAATGCTGGATTCTTTACAAGGGGATGAACTGATGAATTTAACT
GATGCTCTTGATGAGGTATCGTACGCTCAAGAGCAAGAAATCATCCGCGA
AGGCGACGCGGCTTCGgagatgtattttataatgcaagGAAAAGCAGTGG
TTCGAGCAATGgataaaaacacaaaatcacaaaaagacATTGTTGAACTA
GACCGTGGCCAATACTTTGGTGAACTAGCCTTGGTCCTAAAAAAACCACG
TGTGGCATCAGTGTTTGCTATGACAGAGAATACCAAATGTGCTGTCTTAG
ATATCAACGCTTTTGAACGATTGTTGGGACCATGTGTGGATATTatgaaa
agaaatattgaaaaatacgaagaagaaagaaaaagacttGGTATAAACAG
TATCAGTGAAAACCAAGAGAATGGAAATGTCACAAAATCAATGACCAAAC
T
Run BLAST on NCBI

protein sequence of TCONS_00017635-protein

>TCONS_00017635-protein ID=TCONS_00017635-protein|Name=TCONS_00017635-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
MGGPDMMDEPAFKPPPKRGRRQAVAAESYDPMADDDKDENVIFYTKTDEQ
LKCLQEAASNIIFFKKCDKEQRQVLFNAMFEKKVTQGETIIRQGDDGDNF
YVIDKGEYDIFVKDSNGEEKKVASLTEGFFGELALLYNCPRNATIVSASD
YGVLWGLDQKTFRQVVVKATARKRAVFEELLKGVSMLDSLQGDELMNLTD
ALDEVSYAQEQEIIREGDAASEMYFIMQGKAVVRAMDKNTKSQKDIVELD
RGQYFGELALVLKKPRVASVFAMTENTKCAVLDINAFERLLGPCVDIMKR
NIEKYEEERKRLGINSISENQENGNVTKSMTK
Run BLAST on NCBI

transcript from alignment at sc0000271:194741..205404-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017635 ID=TCONS_00017635|Name=TCONS_00017635|organism=Clytia hemisphaerica|type=transcript|length=10664bp|location=Sequence derived from alignment at sc0000271:194741..205404- (Clytia hemisphaerica)
AGTCCATTCAGCCTTTGTAAATTATATTTTTCGTTTAAACGTTAATTTCA
AAAAGGTCCCCATCAGTTTATACTTTTGACTACAACCAAATAGACTATTT
TTTGGGATACAACAGGAGATGGTCGAGAGAAGTTGGTATTAAAGTTCTTT
GATTTTGTTTTGACACTAAAGTGAAAAACGTAAGGTTAGTATTAAGAACA
CTTTATTCAAAATACACCTTTTTTTTACAAGAACATCCAAAATTTTGGAA
ACTTCGGATGTTCTTAACTTTTTTAGTTTTAAACCTAAAAATGTTCTTAA
CACGTTCTTATTTCCACCATTTTTAGAGCATTTTCCTGAGAAATTGGGTG
TTTTAGAATCCCCAAAGCCTTAAATGTTCTTAACTTGTTCTTAACATTTT
GGACATCAAAGTCTTATGTTCTTATAAAAAACGTGTATGGTAAGTAGGTT
ACTATCCAGACCCCTTACCTGACATTTACTGGGTGACCCAGGAAAAAGTT
GTCCGAAAAAATGTCCCAGAGTGCTTTAAGTTTTGATTTTTGATCATAAC
TAAAATATGAGCTATTACTTTTTAAATTTGGCTCACAAGTTCCGAACTTA
TCGAGCTTTTGATTGAAAATCCACTTTTCTTGGCAAGTATAAAAAACACG
TAAAAGAGGAAAGGATATCTAGTTTCCGAAAATCAAAACTCCAAGCATTT
TAGAACATTTGTTCGGCATCAAAAAATAGAGAAACGTCTAAACTTTCTCG
CGGGTCACTCGTTAGTTAGAATTCAAGATTATCAATAGTCATTAATAATA
ATGAACCCACGATCTTTTCTTGTCCTGTATTAGGTCTCCCGGGGGGGTTA
TTCATATGGTTTGATCCACGGCATGTGCCACCCTTAAGGGTAGGTTTTTC
GAGACCCTCGAATTTTGATAGAGTGCACTACAAGGCTCTTCTTTAAGCTG
GATACACTGTAAGGAGTGTGTTTGGGGGACTGCTGAATTGCAAGTCTGAC
AGTAAAAATCTGATGTATCTTTATAGTTTTGACTCATATCTATATTTTGC
ACATTGTGTTGACATCTTGAGCTCATTTCATCAGGCGGCTTCAGCAAAAT
AACGTCGCTTAGAAATCTAGTCAAATATCGGAAACATTAGCCTGTGAGCT
CTTTTAATCCTAAGGCTAGACTAAACGAAAGATTATATTACAAACATGAT
CTAAACTTAGTAATTTTAAAAGAAAATAATAAATTCGCGGAAATTTATAA
TAAAGTAGAACTATAAGATTTCCTTAAAGAATGTAAGATGGGATAGATAT
ACTAGAGGGAAAATTCGAACGTTGTCGAAATCTTTGAAAGGTATCATGGA
AACTAATATCAAAATTTCTTTGAAAGAAGGCTCTTTCGCTTTTGTTGTCA
GTTGAAATTTAATGTAACAGATTTAGCTGTTTTTGGGGTAAAAGCTTTCA
AAAAGAAAAGATTGTCGGATGACTTTTGGACTAGGGAAAATTTCTTCACA
CGAGTAATGATTATGAAAACTTGATAAATGAAAAAATGTGAAAAAAGGAG
TGAAATAGATATCAAATATATTGATATAAAGAATTATAAATGATCCATTT
TTATTGAAAAAATAATCAAGAAAAAAGTCCAAGAAGTACTGTACCAAAAT
CACCATTACAATTGAACGGACTTGGAGTTTACAGTTAAATGATGAAATTC
TCTTTCTATACCATTATTGGGAATCAATATTGAGCAAGTGGTAGAAGGAA
AAAACAGTAATTCTAGGAAGTTCGTATCAAGTTTAACTTTAGAAAATAGC
CCTTTGTGACAGGGGCCAAGTATAAATTTTATTGCCAGATAAGAAGATGA
GATGGAGAAAAGAATTGAGGGCTATTTGAAAAGTGAGGCTCACTGACCTT
TATATACTCTGTACCAAGCTATATCCGTCATCTTTGATCGGAGTTTTTTG
AATGTGGTCATTGCAGTTTTAAAAATTAACATCTAACGGCACTACATCAT
CAAAAGTGTTGAGGAAAAGTGAAGCTCTAGCGCTCTCGATGCATCTACAC
CGCTATCGAGTAGTGCTACCATTAGGGTACCAAATTAAAAAAAAACTACG
TTCAAAGATTTTGAGATACTTGGTCCAGAGTACAAAAAAGTCAGTGATGG
GGGATTGGGCATTGAGTTTAAAGCCCACCCCATCCAGAATGCACCTAGAA
CGCGCCGCAATCATGACAAAGGATTGTATCTAGTGGTTCCTTTGTCTTTG
AGGACTGCATTATTTGAAATCTAGCAATAGACTTTACTTTATCCGGCGTT
TGTGTAAAAACCACACGCGGGCATTCTGGATGGGAAATTAAGTGCCTTCA
TTTCCCATCCAGAAGTCTCGAGTCTAGCCCTTCGGGCTCGGAAGTCAATG
GGATTGGGTAACCACATTATAAAAGCGTTCAACGCCGATTTTTTCATTAG
GGAGGGGTATCCGTTTGGTCTATGATATCAAAAGGTACATTTTTTTCTGC
GCAGCAGTGTAGTGTTAGAAAATTCACTAAATTTATTGACAAGCAACTTA
TATCTGATTTAGGCAGTATTAATTTCCATATTATGGTAATGACACTTTCA
ATCATTCGTACCTATTCATAGCTTACATTTACCCGCCATGTGCAAATGAT
TAATCTTTATGCTCTGAAATTTTGCACACTATTATTATATCAAATTTTAG
AGGAAGAAAGGTAAAACTTTTTTTTGAGTTTTTGAGTTTCCATAGTATTG
GGAAGCTTTTTTGCCAAAAAACGAAAGTTGACCCCCACAAATCCTACATC
GAAAGAACACAAAATTTTGATTAATTCATTTTGATACATTAAACAATACT
CAGTCATTTTTCTATCAAAAGTTAATGACTGTTTTTTAAAAAATTGTCGA
TAAAGTCATCACTGGCAGTCAACTTCAATTTCAGGGGATGCCAAATCAAA
ATGCCAAATCATGTGGATTTCTTAAAATTTGCAAAACTGTTCTTTGATGA
ATTTAGAAACTTTTGGCCAAGAGGTAAAAATCCTACCCATAGAAACGGTA
TCGCTACAGGTAGTTTTCTAACAATTCAGCAACGAGGGTCGCCATAGTAA
CTGGGAATTTATTTTGATAATTTCTAAAAATAGTTGATACCGGTGGAAAG
AGCTCTCAGTATTTTTATACTAAACATGTATATATGCTTTAGCTTGCCTT
GGAGAAGCACCTTGTATGTCTTAGTCTATTCAAAATAGACGATTACCCAG
GAAAAGAATTATCAGAAAGCAAAGTCCAGTCAGAATGTAAAAACCTCATG
ATGTGTAAAACAGAAAATACCTAGGCGTTTTCATTATAATGAAGGGGTGG
TGCAATTCTCACTACTATTTTTTACTTAATTACTGTTTTCTTACTTTTTC
ATATAAAATGGGTGAGAATATTAGGAATAAGAGGGAATATGCACATTATT
CTCTCTCTTTACAAAATCACTCAAATCTCTGATGAGCTGTGAATTGAGAT
TTTTCCATACTGTGTTATTTTTCATAATTTCCCCCCAGTATTTTACAGAT
TTCCATATTATGCTTTTTTCATTTCATTTTTTTTCTGAAATTCCCAAACA
TATATCATACTTAATAAATTATAAATAGTTAATCATAAACTTGCAACAGA
AAAATATATAAAAATATGGAAAACTTAAGGAATTTTATAAGATTTTTTAT
CAGCCACAAAAGGAAACGGTTTTTTCTATGAAATGAAAAAAAGCCTTAGA
CGTCATATTGGGGACTCTTCATGGAATATTTTTATTCTTATCTGGATTTT
TTTCACAAGACTAGTATTTTTAGTCAACGATATTGAAATAGTTACACTTG
ACTGGGATAGCCTCCTTAAAGTCCTGGTTATGAGTTGGGAAAAGACCTTC
TAGTGTATATGGAGGGAGAGCTTAATTACTATATAGTTTGTCTCAAAATA
ATAACTTTCGATAGAATCCGACAAGATAATCAGGAGTGGAATATCTATCA
AATAGAAAATATTTTAAAAAGAATGAATAATGAAAAGTAAAGAGGAAAAA
GATCAGTTTCTTGAAGGACAGTTGTAATTTCTTGATCTTAGAAAGTCATC
ACCCATTTCTCTTATGATAATTCAGATATATTACAAACTAGACTCTAGAT
AGAATTTAGACAATTTAGACTCTTTTATAGCAATTCTGTTTTCTCACTGA
AAATCCACTGAGATTTACAGCGGGTTCATTTCCGTCCATTAAAATTGTTT
TTTACTTTACTGAAGTTTACTAGTTCTTTTCTTGCCGCAATTCTAAAGTA
ATTTTGCAGCTAAATTTCAATTCAATTTCTGCCGGCCGACCTGCAAAAAG
GAAGTATCTTTTACCACCTACTTGGTCCGTAAAAACAATAAATTAATTTT
GCATCGTCTTTTAATTAAAGTTAAGCTTTCTTTGCTAATGAAAAGTGTGT
CTATATTTTTTATCAAAAACGTCGAGAATGCATCTCAACTTTGAAAGACA
AATAATGCCCGCAAACGATCAATAATAATTTTTTGTTGGTATCGTGAAGT
GAAAACAGTTGGCGCGTTTCCTTCCTTTTGCTGTTGAATCCTTGAATGAA
ATTTCTGTTATTATCTAAGTTGGAGCATTTATTTATGAATTAAATTAAGC
AGTCATAAATTGATCATTTACCTTTGAATGAAGTATGAGATTTTTCAAAA
TAGAAAAAGAAGAACTTATAACGTTGGCAACATATTGTTTTTCTGTGGGT
ACACTTCCTTCTAAACTCCAACATATTTGGTTTTTTTCTAAAGTGGATTG
AAATAGAAATGAGGTATTTCATAGCATTGACGATTCGGTTTCGATGACAA
TTTGAAATTTCTTTCTAAATGAGAAGGAAAATTTTTTTTTGGTGTCACGT
TGATAAGACAGTGGGATTTTTCCAGTGGAGTAAAAATAATTTGCAAAACT
AAAACGGACGCAAAATATATATTAGAAAGATTGAGAGGCTGTTTTTTCAC
AAGGAATCGAGTATATTTTCGGAACACAATTACGAACGAAGAAAATTTTA
TTTCATTTTCGATTTTTCACATTGTTTTGGTTTGATTGGTAACATCTCAA
AAAACATATTAGTAAGTAGTCAGGAATAAATATTTATACTTTGTTTGCAA
AACGGTTTGAACTATCATAGGACTGGCAGCATCAAAGAGTTTGTAAATTT
GAAAGAAAAATTTATCAAATTTACTCGAATATTAAATTATGTTTGACTGA
ATACTGTTTCGCTTGCTTTGTTTTGATAGGTAGGTATAGGAATGTATTAG
GTAAAGATGATGTCCAAGAAAGCTAAACTTAGGAGGCTATTCTTTGATAA
TCTCCGAACAGACTCTGATTACTCCCCACTGGCACGTATGTACTTTTAAA
GGCCGTAGCTCCGTAGGAAAATCTACCCAGGTTTGCGGACCGCTTTATCT
CAGATTAGTATAGTTTTTCAGTCCGGTGATTGGCTGAAGTAAAATAATCG
CATGAAAATCTAACGTCATCATAAATATAGAAATTAAAGTCATTTTAGAC
TAGACTACGTGGTTTTGATTATTCTTTGCTTAATATTCAGGTCAGATCGT
TACATTCGCCATATCCCTTTTAGTGCAGAGTGTGGTATACACAGAATGCT
TGATCTGTTAAGAGCGTTCGGAGTTTAATCTTATAATAAAGATCATAACG
TTACAAAACTTGCTACGTTTTTCACATTTGTAGACTTTGTAAAAGCCATA
TGGTGCGAGTTATTAGTACTTCTTCGGTTAACATTATTTCAGTGCCCTTA
CATAATTTTGATATGGTTTTTGTCTATTCCGAGTGTTTAGGCTCTTTTTG
ATTTCAAAAACTGTTCTAATAAAAAAAGTCTAAACTCATACGATTTCCAC
CATACGCTTTCAACCCTTTACCTAACCCTTTACAATATTCTGAAGAAAAT
CTTTAAAAAAAAACAAGAGCCCCCTAAATTTTGGAACCATCCTTAAGTTT
AAGAAGAAAAAAATCATGTCTGAGGAGAATAAGGTAACAGTGTTTTTTTT
GGCTTGCGATGAAAAAATTTCAAGGTATTCTCCTGAAAAATTTCAGGGTC
TTTTTCCCCCCTTTTTTCGTGATAATTTTCTTTATCGAAAACGTTTTCGT
TCCCCCTTTTTACAGTCAATTTTCACACCAATAATCAAGTATATATCGAA
AAATATCATAATTATTCGAGAGATAAGAAAGGAAAGAGAAAATTTGATCT
TTTTCATATATTAGTAAATATATCAAAATTTTTTTTTCGATTCTGTTCTC
TTTTTTGTCATAATTTTGGTTGATTAATAGACCAGTTCTTAACACTTAAT
TGAAATTCGTAATGAAATTAAGGAGGCGTTAAATTTGATGAATATGAAGA
CAATCAGGAAAAAACAAAAGAACATTTTCTTCACTCAAAAAAAATCTATA
TCGACTTCATATAAAGTCCATAAAAAATAACCCCCATGACTCTATAGAAA
ATACAGTCGCCAAAAATTGTGTTTCTCCCTAGGGCAAACAACACTCTCAA
CAAGTGTTATTCAATTCACTCTAACAAGTAGTATTCACAGCTAGAAGACT
TTTGATGAAATTTATCGTTGTTAGACCGCCGTTCCAGTAGTAAGATATGG
GATAGAGATAAGTACAAATAAGATAAAAGGATGTCGCTTTTTTACTTATA
AGAACTAGTAAATTTTGGCTCGCTCTCTGTTGTTCTTGTTTTAAATGCTT
CTAATACACTTGATTTCTATACTTTTAAACTTAAAAATGAGCTGAATTAA
GTCAGCTTTTTCTTACTGATTCTGAAATCAGAGACCCTAATTGTTTTTAA
TTTGTTCTCGGAGTCAGCCTCATGCTCTTATACTAACATTTTCGAATAGA
TAAACGTGTTAGGAAAACGGATAAGAGAGAAAAGGACACCCAGACCATGG
GGTGTTAGCTTTTTGTAAAAAAAGGCAACAACTGATCCTGAATGACATTA
AGACATTGTGCCTCTCCAATATCATGGCGAAATCCGAAAGTTCGACTGAA
TGAGAAACAGATACAGATACAGCCCCAATACCTTGATAGAGAAACAGTTT
GAGTAAAGAGAGTTAGAGTAGTAGAAAGAAATTTGAGTTGCAAAGTAAGG
GGATAATTTTCTTAGTTTTTTAGTTATCTAGTCTAAGATATGGTTGAATA
AGATATTGAAGAGTAGGGAGTGGGGGAGTGATTATTCAAATAGGCTGGCA
TACTAAGTTGTTTCAACGTACATTCAATGTTAGATGCATGTTGTGTGTCA
GCAGGGATATGGAAACCAATATGGAAGAAGTTTACTATAGAATTTTCCTA
ATAATGTTCTCAAATATGATTTTAGATGGTGTAAAGTTATCATAGATTGG
TATTATGATTTAACAAGAGAAAAAAATGATTTAAACTTTTAATTTAATGG
AATTGATGATTAATTAATTGATCATTTGATTGGCGAATATCCTGATTATA
AAATAATTTCTTCAAGAGATAACGCACGACTCCAGAATATGGGTAATGAC
TGCAAATTACATACAGGCCTCAATCGATACAGATGTCAAGAAAATTGAAC
ACACCTCAAAAGTGGTGTTGAAAAACCATGGAATTTTAGACAAGAATAAA
CTTTTATAATAGGGTTTTAGAGTAATGTATCGTCTAGTACATTAAGNCTC
TCTGTTGTTCTTGTTTTAAATGCTTCTAATACACTTGATTTCTATACTTT
TAAACTTAAAAATGAGCTGAATTAAGTCAGCTTTTTCTTACTGATTCTGA
AATCAGAGACCCTAATTGTTTTTAATTTGTTCTCGGAGTCAGCCTCATGC
TCTTATACTAACATTTTCGAATAGATAAACGTGTTAGGAAAACGGATAAG
AGAGAAAAGGACACCCAGACCATGGGGTGTTAGCTTTTTGTAAAAAAAGG
CAACAACTGATCCTGAATGACATTAAGACATTGTGCCTCTCCAATATCAT
GGCGAAATCCGAAAGTTCGACTGAATGAGAAACAGATACAGATACAGCCC
CAATACCTTGATAGAGAAACAGTTTGAGTAAAGAGAGTTAGAGTAGTAGA
AAGAAATTTGAGTTGCAAAGTAAGGGGATAATTTTCTTAGTTTTTTAGTT
ATCTAGTCTAAGATATGGTTGAATAAGATATTGAAGAGTAGGGAGTGGGG
GAGTGATTATTCAAATAGGCTGGCATACTAAGTTGTTTCAACGTACATTC
AATGTTAGATGCATGTTGTGTGTCAGCAGGGATATGGAAACCAATATGGA
AGAAGTTTACTATAGAATTTTCCTAATAATGTTCTCAAATATGATTTTAG
ATGGTGTAAAGTTATCATAGATTGGTATTATGATTTAACAAGAGAAAAAA
ATGATTTAAACTTTTAATTTAATGGAATTGATGATTAATTAATTGATCAT
TTGATTGGCGAATATCCTGATTATAAAATAATTTCTTCAAGAGATAACGC
ACGACTCCAGAATATGGGTAATGACTGCAAATTACATACAGGCCTCAATC
GATACAGATGTCAAGAAAATTGAACACACCTCAAAAGTGGTGTTGAAAAA
CCATGGAATTTTAGACAAGAATAAACTTTTATAATAGGGTTTTAGAGTAA
TGTATCGTCTAGTACATTAAGGGCAGAAACTTTCGCGTTTTTCGCGATTT
TGACCCTTTTTCGCGAAAGTTTCTGCCAGGTAAGAAATTAAACCTGAAAA
ACGCGAAAAATAGAATTTCTTACTCACTTACTTTTGCGAGTTTTTGTTAC
CAAAAAAGGTAAATTTTGTATGAATTCGCGAAAGTTCTATCTGTGAAATT
TCTGGCAAAACCATAATTCGCGAAACTTAAATAATTCGCTAAATTTTGCA
ACTTTTTGACTTCGCGAAACTTTCTGCCCTTAAAGTATAATTATGACTTG
TGTTACGGTTTCCCCAATCCCAAAAGTTTATTTAGCGTACAAAAAGGGCC
CAAAATTTGTACTGTAATTTGCCCTAATCTTCATCTTTGCCAATCCGTTT
ATCATGACCCCGTTTTATAATTTACTTAAGTATGTTATAAAAGTCTCACA
AATATATTCGTGCAAAATTTATTTTTCGTGAAAATATAACCCACATGGAG
GGAAAACGCTATTCACATTTTTAAAGATTCTCACCCAAATAGGTGTCATT
TTGGATCTGTTCTATAAAGTGCTTGCCAACATTTGTTCTCGTTAATAATA
ATAATTCTTTTCAAAGATATCCCCTAAAAGATCCTAAGATTACCCAATTG
GTTATTATTCACTAAGAGTGATACCTTTTGACGTAAGATTCTCAATGAAG
AAGGGGGCGGACCATTAACACAGCAGATTATAAATAGTTCATCAAAATGG
AATGCAACATTTTGAGGGTGCAAGGCTTTTTTCCAAAAGATAACTTTTTA
TCAAATCCCAACTTTTTTACCAAAATTAAAAAAAGTGTGAAGACTTTTTA
TTGTTTTCTTCTCAATATTTTCTGATATTTTCTCCATTTTTCTCTAGGCT
CCATTTGCGTGAAGGGAGTGAAGACACAAGATTCGTTGACCCGCTGTAAG
AAGAAGAAAGGCGACCAAAACGGTGGTGGACCCTCAGAAAGCTTGCTACA
GGAGATCAAAGAAGAAATGGGCGGACCAGATATGATGGATGAACCCGCCT
TTAAGCCACCACCAAAACGAGGCCGACGACAAGCAGTTGCCGCTGAATCT
TACGACCCTATGGCCGATGACGACAAAGACGAGAACGTCATTTTTTACAC
CAAGACAGACGAACAGTTAAAATGTCTACAAGAGGCTGCGTCGAATATCA
TTTTCTTTAAGAAATGCGACAAAGAGCAGCGACAAGTCTTATTTAACGCC
ATGTTTGAAAAGAAGGTTACTCAAGGTGAAACCATAATACGTCAAGGAGA
TGACGGAGATAATTTTTACGTCATCGATAAGGGAGAATATGATATTTTCG
TTAAAGACTCGAATGGTGAAGAAAAGAAAGTCGCCTCTTTGACCGAAGGG
TTTTTCGGTGAATTAGCTCTTCTATACAACTGTCCACGAAATGCAACGAT
TGTCTCCGCGTCCGACTATGGAGTCCTGTGGGGCCTGGATCAGAAAACCT
TCCGACAGGTAGTAGTCAAGGCAACCGCTCGTAAAAGAGCTGTTTTCGAA
GAGCTGCTAAAAGGAGTCTCAATGCTGGATTCTTTACAAGGGGATGAACT
GATGAATTTAACTGATGCTCTTGATGAGGTATCGTACGCTCAAGAGCAAG
AAATCATCCGCGAAGGCGACGCGGCTTCGGAGATGTATTTTATAATGCAA
GGAAAAGCAGTGGTTCGAGCAATGGATAAAAACACAAAATCACAAAAAGA
CATTGTTGAACTAGACCGTGGCCAATACTTTGGTGAACTAGCCTTGGTCC
TAAAAAAACCACGTGTGGCATCAGTGTTTGCTATGACAGAGAATACCAAA
TGTGCTGTCTTAGATATCAACGCTTTTGAACGATTGTTGGGACCATGTGT
GGATATTATGAAAAGAAATATTGAAAAATACGAAGAAGAAAGAAAAAGAC
TTGGTATAAACAGTATCAGTGAAAACCAAGAGAATGGAAATGTCACAAAA
TCAATGACCAAACT

Coding sequence (CDS) from alignment at sc0000271:194741..205404-

>TCONS_00017635 ID=TCONS_00017635|Name=TCONS_00017635|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at sc0000271:194741..205404- (Clytia hemisphaerica)
ATGGGCGGACCAGATATGATGGATGAACCCGCCTTTAAGCCACCACCAAA
ACGAGGCCGACGACAAGCAGTTGCCGCTGAATCTTACGACCCTATGGCCG
ATGACGACAAAGACGAGAACGTCATTTTTTACACCAAGACAGACGAACAG
TTAAAATGTCTACAAGAGGCTGCGTCGAATATCATTTTCTTTAAGAAATG
CGACAAAGAGCAGCGACAAGTCTTATTTAACGCCATGTTTGAAAAGAAGG
TTACTCAAGGTGAAACCATAATACGTCAAGGAGATGACGGAGATAATTTT
TACGTCATCGATAAGGGAGAATATGATATTTTCGTTAAAGACTCGAATGG
TGAAGAAAAGAAAGTCGCCTCTTTGACCGAAGGGTTTTTCGGTGAATTAG
CTCTTCTATACAACTGTCCACGAAATGCAACGATTGTCTCCGCGTCCGAC
TATGGAGTCCTGTGGGGCCTGGATCAGAAAACCTTCCGACAGGTAGTAGT
CAAGGCAACCGCTCGTAAAAGAGCTGTTTTCGAAGAGCTGCTAAAAGGAG
TCTCAATGCTGGATTCTTTACAAGGGGATGAACTGATGAATTTAACTGAT
GCTCTTGATGAGGTATCGTACGCTCAAGAGCAAGAAATCATCCGCGAAGG
CGACGCGGCTTCGGAGATGTATTTTATAATGCAAGGAAAAGCAGTGGTTC
GAGCAATGGATAAAAACACAAAATCACAAAAAGACATTGTTGAACTAGAC
CGTGGCCAATACTTTGGTGAACTAGCCTTGGTCCTAAAAAAACCACGTGT
GGCATCAGTGTTTGCTATGACAGAGAATACCAAATGTGCTGTCTTAGATA
TCAACGCTTTTGAACGATTGTTGGGACCATGTGTGGATATTATGAAAAGA
AATATTGAAAAATACGAAGAAGAAAGAAAAAGACTTGGTATAAACAGTAT
CAGTGAAAACCAAGAGAATGGAAATGTCACAAAATCAATGACCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009854XLOC_009854Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017635-proteinTCONS_00017635-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017635-exon-sc0000271-1575043694:205221..205404TCONS_00017635-exon-sc0000271-1575043694:205221..205404Clytia hemisphaericaexon
TCONS_00017635-exon-sc0000271-1575043694:194741..195857TCONS_00017635-exon-sc0000271-1575043694:194741..195857Clytia hemisphaericaexon
TCONS_00017635-exon-sc0000271-1510915933:205221..205404TCONS_00017635-exon-sc0000271-1510915933:205221..205404Clytia hemisphaericaexon
TCONS_00017635-exon-sc0000271-1510915933:194741..195857TCONS_00017635-exon-sc0000271-1510915933:194741..195857Clytia hemisphaericaexon
TCONS_00017635-exon-sc0000271-1491911889:205221..205404TCONS_00017635-exon-sc0000271-1491911889:205221..205404Clytia hemisphaericaexon
TCONS_00017635-exon-sc0000271-1491911889:194741..195857TCONS_00017635-exon-sc0000271-1491911889:194741..195857Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000271supercontigsc0000271:194741..205404 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0316817	0	0	1.0077	0.761674	29.3222	33.1211	38.4656	36.4211	18.3668	25.2508	7.80022	5.34057	0.0184482	0.0197977	5.95096	5.09962	16.9919	16.4797	15.2348	12.6863	3.98586	5.82505	6.59265	7.78278	1.69285	1.28367	0.07212	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000595cNMP-bd_dom
IPR014710RmlC-like_jellyroll
IPR012198cAMP_dep_PK_reg_su
IPR018488cNMP-bd_CS
IPR018490cNMP-bd-like
Vocabulary: Cellular Component
TermDefinition
GO:0005952cAMP-dependent protein kinase complex
Vocabulary: Biological Process
TermDefinition
GO:0001932regulation of protein phosphorylation
Vocabulary: Molecular Function
TermDefinition
GO:0008603cAMP-dependent protein kinase regulator activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001932 regulation of protein phosphorylation
cellular_component GO:0005952 cAMP-dependent protein kinase complex
molecular_function GO:0008603 cAMP-dependent protein kinase regulator activity
Blast
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BLAST of TCONS_00017635 vs. Swiss-Prot (Human)
Match: KAP2 (cAMP-dependent protein kinase type II-alpha regulatory subunit OS=Homo sapiens GN=PRKAR2A PE=1 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 3.289e-77
Identity = 142/303 (46.86%), Postives = 189/303 (62.38%), Query Frame = 1 
Query:  343 PPPKR-GRRQAVAAESYDPMADDDKDENVIFYTKTDEQLKCLQEAASNIIFFKKCDKEQRQVLFNAMFEKKVTQGETIIRQGDDGDNFYVIDKGEYDIFVKDSNGEEKKVASLTEGFFGELALLYNCPRNATIVSASDYGVLWGLDQKTFRQXXXXXXXXXXXXFEELLKGVSMLDSLQGDELMNLTDALDEVSYAQEQEIIREGDAASEMYFIMQGKAVVRAMDKNTKSQKD-------IVELDRGQYFGELALVLKKPRVASVFAMTENTKCAVLDINAFERLLGPCVDIMKRNIEKYEEE 1227
            P P R  RR +V AE+Y+P  +++  +  + + KTDEQ   LQEA  +I+ FK  D+EQ   + +AMFE+ V   E +I QGDDGDNFYVI++G YDI V   N           G FGELAL+YN PR ATIV+ S+ G LWGLD+ TFR+++VK  A+KR +FE  ++ V +L SL+  E M + D + E  Y   + II +G+ A   Y I  G+  +  +   TKS KD       I    +GQYFGELALV  KPR AS +A+  + KC V+D+ AFERLLGPC+DIMKRNI  YEE+
Sbjct:   89 PVPSRFNRRVSVCAETYNPDEEEEDTDPRVIHPKTDEQRCRLQEACKDILLFKNLDQEQLSQVLDAMFERIVKADEHVIDQGDDGDNFYVIERGTYDILVTKDNQTRSVGQYDNRGSFGELALMYNTPRAATIVATSE-GSLWGLDRVTFRRIIVKNNAKKRKMFESFIESVPLLKSLEVSERMKIVDVIGEKIYKDGERIITQGEKADSFYIIESGEVSI-LIRSRTKSNKDGGNQEVEIARCHKGQYFGELALVTNKPRAASAYAVG-DVKCLVMDVQAFERLLGPCMDIMKRNISHYEEQ 388
The following BLAST results are available for this feature:
BLAST of TCONS_00017635 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KAP23.289e-7746.86cAMP-dependent protein kinase type II-alpha regula... [more]
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