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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017630 ID=TCONS_00017630|Name=TCONS_00017630|organism=Clytia hemisphaerica|type=transcript|length=2178bp
aaatacacgcatttctcctagtttgcaatagtacTCGACTGATAAAGATT
GTAAGTATTGTAATCGGGGAAAGGTCCCTTGACTCCAAGTTCAGAATAGC
GTCTTGTAAAGTAGCTTTCCAAATTTAATCcatgttttggtgtttttata
aAGGGTTTAGGCGGATAAGATAACGTccctcttttattaaaattgaaCAT
TACATAATTACTTTATTTTCTTGATATTTCTAAGAAAATTGTCACATTAT
TACTTATCAattctttttcacaaaagttGATGATTCATTTATCATGAGAC
TGCTGAAGTCATCAAAAACGAGGAATTGATGTTATTGCAAAAAAAGTTGT
TGTGTGTACTATATACTTATTAGAATGTGGTTTATTATATGGCCTCTAAT
GTCGTACGTAAGGTATGTATTACTTTGAGACGAGGAAGTTTctcttaaaa
agtttaatttaattttgtcgtctttttataaaaaagcaagGTGCGTTGTT
GTTATGATTCAGTTTCGTGATAAGGGATTTCCCTCAACATCGTATTTACT
TTCAGTAATAGATAATGTTTCTCTCGTATCATTTTAATGGTATCATTTAG
TTGAACTTATTACACAATCTTTCGTAGTATAATCTCTTTGAATTAACCTT
TTAATTACATTTCTCCTTATCATCTTTTTTAGTGAACTAATACAAAAAAC
TAACTACTTACCAATAATCCGGAATATTGTTGAGCATATCATTGGCatgt
caaatttaaaaaccagCCTCGAGATATCAGGATACATCTAAAACACTGAC
AACTTTTGATAAGAAGATTGAATTTGTTAACTACATCACAATCTGTATAA
TATCTAATTTAAAGACCAGAATGGGAGAGTCTGCTTTTCCCTTTCGTTGG
TGGGAGTTTGCGTGGTATTTGATGATCCTTATTTTCGGTATCGTCGGGAA
TTCTCTGGTCATTCTGGTCGTTCTTATGAACAAAAAGATCGATGCAAAAT
CTACGTTTAATATCTTGGTTATCGTGCTGGCTATAACAGACTTTCTAGTG
TCGGCTGTTGGCTTACCGATGTATTATTTATCAACGGACGCGTACAAGCA
TCCAGACGGCCAACAAGGAGATTTTCTTTGTATGTTTTTCACCGGATATT
TCCTACCATTTTTTCTATTGGATGTTTCAGTCTTCATTTTGGTGTTAATC
GCGCTCGGACGGAGGAGAGCAATCACTAATCCGCTCTCCATCTTAGATCA
TGATTCAACATGGAGAAAGATTCTTCCAATCTTCTTTGCGACCGTCTTAT
CTTTGGGGTTAGGACTGCCAACTATATTTGGTCTTAAATACGTCCCTCAA
AACCCAATGGTTGGAAATCATTGCTCCTACAAATACACTTTCGCGCAATC
GATTATCATTTATTGTATCGTATTTATTGTCGATACAATCTCCCCGATTG
CAATATTGATTATCTGTTTTCGGCATATCAAGAAGTCCTTTCAAATGACA
AATATACTATTATCCATGTCAAACACTACCAGGCTAACTACAAATGACGT
CGTCctaaagaaaaagcaaaaatcaatCGGAACAATGAAACTTGTAGTTC
TTGCTTtctttttgtgtattttaccgaaccaCGTGTTATACTTGATGTCG
TTGGCAGGCGTGCAAGGACTCGGCTGGAATACAGAGATCAGTCAGATAGG
AGTTTTAATCCGCTTCACAAACTCTTGTTTAAATCCTCTCCTGTATTCCT
TCAAGAGCGAGAAATTTCGCAAAAACTTTCGAGATACGTTCCCTTGGTGC
TTCAAAAGTCGCCCAAAGAGGTTAATGTTCAAACAACACGTTAACGCCAC
GAGACGTGACGGTTACGTTGCTATTAGAAACGCAGAAACAACGACGACCT
CCAATATATTctaaacaatttcatttttttatcatcTCAAGCTTATAAAC
CTTTATTGTTCTTAGTTATTTACTTATCTTGCGGAAAGAAACATTATTTA
TGGAATAAAGTGGAAGTAATGAAATCGCTATTGTCACCGAACtttgaatt
ctgaaaaatctttaaaaaacccAAAATTCTTAATATATTTTGACATTGAT
TGTAACTTTAATCTAGATCATTTTCATCcagaaatgtcatttttttattC
AGACTGagaagaaaaaacttcaaaaaaa Run BLAST on NCBI transcript from alignment at sc0000271:125922..128099- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017630 ID=TCONS_00017630|Name=TCONS_00017630|organism=Clytia hemisphaerica|type=transcript|length=2178bp|location=Sequence derived from alignment at sc0000271:125922..128099- (Clytia hemisphaerica)
AAATACACGCATTTCTCCTAGTTTGCAATAGTACTCGACTGATAAAGATT
GTAAGTATTGTAATCGGGGAAAGGTCCCTTGACTCCAAGTTCAGAATAGC
GTCTTGTAAAGTAGCTTTCCAAATTTAATCCATGTTTTGGTGTTTTTATA
AAGGGTTTAGGCGGATAAGATAACGTCCCTCTTTTATTAAAATTGAACAT
TACATAATTACTTTATTTTCTTGATATTTCTAAGAAAATTGTCACATTAT
TACTTATCAATTCTTTTTCACAAAAGTTGATGATTCATTTATCATGAGAC
TGCTGAAGTCATCAAAAACGAGGAATTGATGTTATTGCAAAAAAAGTTGT
TGTGTGTACTATATACTTATTAGAATGTGGTTTATTATATGGCCTCTAAT
GTCGTACGTAAGGTATGTATTACTTTGAGACGAGGAAGTTTCTCTTAAAA
AGTTTAATTTAATTTTGTCGTCTTTTTATAAAAAAGCAAGGTGCGTTGTT
GTTATGATTCAGTTTCGTGATAAGGGATTTCCCTCAACATCGTATTTACT
TTCAGTAATAGATAATGTTTCTCTCGTATCATTTTAATGGTATCATTTAG
TTGAACTTATTACACAATCTTTCGTAGTATAATCTCTTTGAATTAACCTT
TTAATTACATTTCTCCTTATCATCTTTTTTAGTGAACTAATACAAAAAAC
TAACTACTTACCAATAATCCGGAATATTGTTGAGCATATCATTGGCATGT
CAAATTTAAAAACCAGCCTCGAGATATCAGGATACATCTAAAACACTGAC
AACTTTTGATAAGAAGATTGAATTTGTTAACTACATCACAATCTGTATAA
TATCTAATTTAAAGACCAGAATGGGAGAGTCTGCTTTTCCCTTTCGTTGG
TGGGAGTTTGCGTGGTATTTGATGATCCTTATTTTCGGTATCGTCGGGAA
TTCTCTGGTCATTCTGGTCGTTCTTATGAACAAAAAGATCGATGCAAAAT
CTACGTTTAATATCTTGGTTATCGTGCTGGCTATAACAGACTTTCTAGTG
TCGGCTGTTGGCTTACCGATGTATTATTTATCAACGGACGCGTACAAGCA
TCCAGACGGCCAACAAGGAGATTTTCTTTGTATGTTTTTCACCGGATATT
TCCTACCATTTTTTCTATTGGATGTTTCAGTCTTCATTTTGGTGTTAATC
GCGCTCGGACGGAGGAGAGCAATCACTAATCCGCTCTCCATCTTAGATCA
TGATTCAACATGGAGAAAGATTCTTCCAATCTTCTTTGCGACCGTCTTAT
CTTTGGGGTTAGGACTGCCAACTATATTTGGTCTTAAATACGTCCCTCAA
AACCCAATGGTTGGAAATCATTGCTCCTACAAATACACTTTCGCGCAATC
GATTATCATTTATTGTATCGTATTTATTGTCGATACAATCTCCCCGATTG
CAATATTGATTATCTGTTTTCGGCATATCAAGAAGTCCTTTCAAATGACA
AATATACTATTATCCATGTCAAACACTACCAGGCTAACTACAAATGACGT
CGTCCTAAAGAAAAAGCAAAAATCAATCGGAACAATGAAACTTGTAGTTC
TTGCTTTCTTTTTGTGTATTTTACCGAACCACGTGTTATACTTGATGTCG
TTGGCAGGCGTGCAAGGACTCGGCTGGAATACAGAGATCAGTCAGATAGG
AGTTTTAATCCGCTTCACAAACTCTTGTTTAAATCCTCTCCTGTATTCCT
TCAAGAGCGAGAAATTTCGCAAAAACTTTCGAGATACGTTCCCTTGGTGC
TTCAAAAGTCGCCCAAAGAGGTTAATGTTCAAACAACACGTTAACGCCAC
GAGACGTGACGGTTACGTTGCTATTAGAAACGCAGAAACAACGACGACCT
CCAATATATTCTAAACAATTTCATTTTTTTATCATCTCAAGCTTATAAAC
CTTTATTGTTCTTAGTTATTTACTTATCTTGCGGAAAGAAACATTATTTA
TGGAATAAAGTGGAAGTAATGAAATCGCTATTGTCACCGAACTTTGAATT
CTGAAAAATCTTTAAAAAACCCAAAATTCTTAATATATTTTGACATTGAT
TGTAACTTTAATCTAGATCATTTTCATCCAGAAATGTCATTTTTTTATTC
AGACTGAGAAGAAAAAACTTCAAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017630-exon-sc0000271-1575043694:125922..128099 | TCONS_00017630-exon-sc0000271-1575043694:125922..128099 | Clytia hemisphaerica | exon |
| TCONS_00017630-exon-sc0000271-1510915933:125922..128099 | TCONS_00017630-exon-sc0000271-1510915933:125922..128099 | Clytia hemisphaerica | exon |
| TCONS_00017630-exon-sc0000271-1491911889:125922..128099 | TCONS_00017630-exon-sc0000271-1491911889:125922..128099 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000271 | supercontig | sc0000271:125922..128099 - |
Blast
The following BLAST results are available for this feature:
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