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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017628 ID=TCONS_00017628|Name=TCONS_00017628|organism=Clytia hemisphaerica|type=transcript|length=4150bp
GATAATTGGTTTTTGGAAAGTGGTGTATAATGTATAATTTATTTaatcca
aaagaaattgacttcaaCTCAACCATATCAAAAGTTTGTCATAAAAAAAC
TGACAAATACTACCTAGAAACATCTAAAACGCATAAATTACTCATCGTCC
CTAAAACACCCTTTTTATCCACAGGTACAACggtaaaaaaataacaattg
cCATCAAAAGTCTTTGTAAGTGAACAAGCTATTGGAAGTGGAAGAGCATC
AACTTCACCGATTCGCATCCAACGCCCTATATCAGAGGGCGGCTGGGCGT
AAATGTTATCTGAATGGTAAGCAAACAATAAATATACGCGTACGTTATCT
TGACAATTTTGTGAAAGTTCAGTGCAATTCCATTTCAAAACTACTGCCCC
TGATTCTACATCTGTTGTTAATTCGGTCAAAATATTCGGTAAGCGCGCTC
GCTGTGTCTCTTCGTATGTCGGTGGTGGACGCCCATCGATATCAAGTAAA
CAAGGAATCGGAATTTTCGAAACAGAAACGGGTTGCAATCGGGAAACGTC
CTGGCTCGCTGGGAAATCATAATCTGATCTCGACAGAGCTTTATTGTTTC
TTAAATCATCGTTAGTTGGTAATCGATTATCCTGACTCTTTTGTTGATAG
CGAATGATTTGTGCCGGATTTTTCTTGCTTGAAGATACAGGTACTAATTT
AAAGTTCTGTTGCTGTGCTTTCATATTAGGATCAGCAGACATTCTACGAT
CATGTACAGGCGTCAAAAGATGTCCTTCTGTGACTTCATGTAGTGTCAAA
GGTGGAGGGACTGGTATGGGGAGTTTCCTTGATTTCGTTTTTGGTGATAA
CGGGCGTTCGGAGTGTAGTGATTTTTCCTGAGGGCGTGTTTGAGGCGTAG
TGTATGTCTCTTGTTTTGGTGTTGGTGAATGTATAACAATAGGTGTATCT
GGTGTGGTCTGTaaaagtttgttattgtttgTGTCTTGTCTCCTTTGCTC
AGACTGCCTCGGTGACAATTGCTGACGGAGAGAAGGAGATTTCGGAGAAG
ATTGTATCAAGCGAGTCCTCTCCCCTGGGGAAACTAAAATTCTCTCGGGT
GGAATTCTTGGATtcccattttgttgtttttgtccTTGAGGAGCTAATAA
TTCCTCCTCGGGAATCCTAAGACTTTGGCGAATAGTGTTTGTGTTTGCTG
GTGAAACTGAACTTTCCTCAGGTGGGAATCGAGCATGGGGATTTTTCCTT
CGTGGGGAAATCAAAACTTCCTCCGATGGGTATCGTGGATTTCCATTGCG
GTATGGGTGCAAATATTCCACTGGTGCGCCTTGTTGCATGTAACCAGGAT
CGAAGTTGAATCTGGCATTAGCTGCACCATTTGGTGAACGATGCATTTCA
AGTCGTTGTAAATGTTCTTGTTGCTTTAAAAATTCTTGTTCCCACTTCAT
ACTAGCCAGTGCCATTTCTTCGTAAGCTTTCGCTTTTTGTTTAGAAGACA
GCCTTTTAAATTGAGGTGATTGTTGAAGTTCAAAAGCGTGCCTTATTCGC
ATTTCTTCGAAGAAACGTTGATGCTGAGCTGCAGTTGCTGGCACTCGATT
ATACCACGGCGGTTGGTACTCGTGCGGCCGAACGACGTGCCGGGGCCGTG
GACCACGATTCAAAGGTGGGCGACCAACACGTGGTTTACGTTTATGTTGA
AATTCAGGGAATACTTCTGAATTGGCGGCTCGCTTTGAGGGACCTCTCAT
TCTGTATCTCGGTGTATTGTCCATGGAAACATTCGGGTTTATGGAAGTAA
TGGAGAAAGGTGGTTGCTGATTGACAGCTCTGGTCAAAGGTTGGTATTGA
CTGACTGGTTCAATAAAAGCATGATTTTGATTGGATGCTTCTGCATAAGA
ACGATTGTGATTGGATGGCTCTAAAACTGGTGGATTCCTATCGGCTGTTA
AGTTTCTCTCTTTgtatttttcgacaatttggTCGACTTTCCTTTCAGGT
TCTGTTGTTAGTTGGTATGGTTTAACCTCCATTGTTGGCAATGATCGAAA
CATTGCCGGCACAAAATTATTATTCGCAGTCTCCACAGATGCAGTGATGG
ATGATGTTGATGTAGAAATTCGAGGTGATAACATATCCTCAATCTCATTG
GTCGATTCATTTGAAGCAATACCTTGATTGGTTGGTTTAGCTAATGCGAT
ATCATGGTCTCTAGGTGTTAATCTATCATCTTTCTGATCAGCTGATCGAA
AAAATGCACCGTTTTGATTGACCAGTTCTTCATCTCTATGCTTCAAATCA
CCAACCTCTATGAAAGttcctttattttctttagTAGTTGTTCCTTTATC
AAAACGTTCGATTGTCATTGGTTTATCGCTTATAGACAAAGTCTTTTCAA
CGCAACTTTCTTCAGTTGAACTGTCCTTAACCGTTATATTTATTTTCTCA
TCTATAACCAATTCATCACTGTTCTCAAGTTCTATTTTTGTTTCTTCACG
GCTCAGTGACGTCTCTACCACTTCAATAACGGTCGAATTATCGTCAGAGG
GCGCCAGAGGTGTGATATCGTTTTCGTCACGCAAAGAGCTAGAAGAATTT
GGTGAACAAGTTAGAGGTAGAATTTTATCTTCAGCAAGGTCGATACGAGT
TCGAGGAGAAATTGAAATCTCATCGCCCTCGTTTTCACTCTCTTTTTGCT
CATTTGTAGGAGCTTTTTCATCtccaattttcattttctgaattAACGAG
CATTCTTCGGTGTTGGTGGATTTGTCAGTTGACACCTGAAGAAGGGAATA
GAGAAATTTGTTATAATTTCATTTCCTTTGTCTGttaattgggccattcc
attttttagactgattttagtttgtCCACCGTCACGTTTAAGCTACGAAA
AGAAATTTCCAACGTTTTCTTTACANTTGTTGAAATTCAGGGAATACTTC
TGAATTGGCGGCTCGCTTTGAGGGACCTCTCATTCTGTATCTCGGTGTAT
TGTCCATGGAAACATTCGGGTTTATGGAAGTAATGGAGAAAGGTGGTTGC
TGATTGACAGCTCTGGTCAAAGGTTGGTATTGACTGACTGGTTCAATAAA
AGCATGATTTTGATTGGATGCTTCTGCATAAGAACGATTGTGATTGGATG
GCTCTAAAACTGGTGGATTCCTATCGGCTGTTAAGTTTCTCTCTTTgtat
ttttcgacaatttggTCGACTTTCCTTTCAGGTTCTGTTGTTAGTTGGTA
TGGTTTAACCTCCATTGTTGGCAATGATCGAAACATTGCCGGCACAAAAT
TATTATTCGCAGTCTCCACAGATGCAGTGATGGATGATGTTGATGTAGAA
ATTCGAGGTGATAACATATCCTCAATCTCATTGGTCGATTCATTTGAAGC
AATACCTTGATTGGTTGGTTTAGCTAATGCGATATCATGGTCTCTAGGTG
TTAATCTATCATCTTTCTGATCAGCTGATCGAAAAAATGCACCGTTTTGA
TTGACCAGTTCTTCATCTCTATGCTTCAAATCACCAACCTCTATGAAAGt
tcctttattttctttagTAGTTGTTCCTTTATCAAAACGTTCGATTGTCA
TTGGTTTATCGCTTATAGACAAAGTCTTTTCTACGCAACTTTCTTCAGTT
GAACTGTCCTTAACCGGTATATCTATTTTCTCATCTATAACCAATTCATC
ACTGTTCTCAAGTTCTATTTTTGTTTCTTCACGGCTCAGTGACGTCTCTA
CCACTTCAATAACGGTCGAATTATCGTCAGAGGGCGCCAGAGGTGTGATA
TCGTTTTCGTCACGCAAAGAGCTAGAAGAATTTGGTGAACAAGTTAGAGG
TAGAATTTTATCTTCAGCAAGGTCGATACGAGTTCGAGGAGAAATTGAAA
TCTCATCGCCCTCGTTTTCACTCTCTTTTTGCTCATTTGTAGGAGCTTTT
TCATCtccaattttcattttctgaattAACGAGCATTCTTCGGTGTTGGT
GGATTTGTCAGTTGACACCTGAAGAAGGGAATAGAGAAATTTGTTATAAT
TTCATTTCCTTTGTCTGttaattgggccattccattttttagactgattt
tagtttgtCCACCGTCACGTTTAAGCTACGAAAAGAAATTTCCAACGTTT Run BLAST on NCBI transcript from alignment at sc0000271:32408..36627- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017628 ID=TCONS_00017628|Name=TCONS_00017628|organism=Clytia hemisphaerica|type=transcript|length=4220bp|location=Sequence derived from alignment at sc0000271:32408..36627- (Clytia hemisphaerica)
GATAATTGGTTTTTGGAAAGTGGTGTATAATGTATAATTTATTTAATCCA
AAAGAAATTGACTTCAACTCAACCATATCAAAAGTTTGTCATAAAAAAAC
TGACAAATACTACCTAGAAACATCTAAAACGCATAAATTACTCATCGTCC
CTAAAACACCCTTTTTATCCACAGGTACAACGGTAAAAAAATAACAATTG
CCATCAAAAGTCTTTGTAAGTGAACAAGCTATTGGAAGTGGAAGAGCATC
AACTTCACCGATTCGCATCCAACGCCCTATATCAGAGGGCGGCTGGGCGT
AAATGTTATCTGAATGGTAAGCAAACAATAAATATACGCGTACGTTATCT
TGACAATTTTGTGAAAGTTCAGTGCAATTCCATTTCAAAACTACTGCCCC
TGATTCTACATCCGTCGTTAATTCGGTCAAAATATTCGGTAAGCGCGCTC
GCTGTGTCTCTTCNCGCGCCTGATTCTACATCTGTTGTTAATTCGGTCAA
AATATTCGGTAAGCGCGCTCGCTGTGTCTCTTCGTATGTCGGTGGTGGAC
GCCCATCGATATCAAGTAAACAAGGAATCGGAATTTTCGAAACAGAAACG
GGTTGCAATCGGGAAACGTCCTGGCTCGCTGGGAAATCATAATCTGATCT
CGACAGAGCTTTATTGTTTCTTAAATCATCGTTAGTTGGTAATCGATTAT
CCTGACTCTTTTGTTGATAGCGAATGATTTGTGCCGGATTTTTCTTGCTT
GAAGATACAGGTACTAATTTAAAGTTCTGTTGCTGTGCTTTCATATTAGG
ATCAGCAGACATTCTACGATCATGTACAGGCGTCAAAAGATGTCCTTCTG
TGACTTCATGTAGTGTCAAAGGTGGAGGGACTGGTATGGGGAGTTTCCTT
GATTTCGTTTTTGGTGATAACGGGCGTTCGGAGTGTAGTGATTTTTCCTG
AGGGCGTGTTTGAGGCGTAGTGTATGTCTCTTGTTTTGGTGTTGGTGAAT
GTATAACAATAGGTGTATCTGGTGTGGTCTGTAAAAGTTTGTTATTGTTT
GTGTCTTGTCTCCTTTGCTCAGACTGCCTCGGTGACAATTGCTGACGGAG
AGAAGGAGATTTCGGAGAAGATTGTATCAAGCGAGTCCTCTCCCCTGGGG
AAACTAAAATTCTCTCGGGTGGAATTCTTGGATTCCCATTTTGTTGTTTT
TGTCCTTGAGGAGCTAATAATTCCTCCTCGGGAATCCTAAGACTTTGGCG
AATAGTGTTTGTGTTTGCTGGTGAAACTGAACTTTCCTCAGGTGGGAATC
GAGCATGGGGATTTTTCCTTCGTGGGGAAATCAAAACTTCCTCCGATGGG
TATCGTGGATTTCCATTGCGGTATGGGTGCAAATATTCCACTGGTGCGCC
TTGTTGCATGTAACCAGGATCGAAGTTGAATCTGGCATTAGCTGCACCAT
TTGGTGAACGATGCATTTCAAGTCGTTGTAAATGTTCTTGTTGCTTTAAA
AATTCTTGTTCCCACTTCATACTAGCCAGTGCCATTTCTTCGTAAGCTTT
CGCTTTTTGTTTAGAAGACAGCCTTTTAAATTGAGGTGATTGTTGAAGTT
CAAAAGCGTGCCTTATTCGCATTTCTTCGAAGAAACGTTGATGCTGAGCT
GCAGTTGCTGGCACTCGATTATACCACGGCGGTTGGTACTCGTGCGGCCG
AACGACGTGCCGGGGCCGTGGACCACGATTCAAAGGTGGGCGACCAACAC
GTGGTTTACGTTTATGTTGAAATTCAGGGAATACTTCTGAATTGGCGGCT
CGCTTTGAGGGACCTCTCATTCTGTATCTCGGTGTATTGTCCATGGAAAC
ATTCGGGTTTATGGAAGTAATGGAGAAAGGTGGTTGCTGATTGACAGCTC
TGGTCAAAGGTTGGTATTGACTGACTGGTTCAATAAAAGCATGATTTTGA
TTGGATGCTTCTGCATAAGAACGATTGTGATTGGATGGCTCTAAAACTGG
TGGATTCCTATCGGCTGTTAAGTTTCTCTCTTTGTATTTTTCGACAATTT
GGTCGACTTTCCTTTCAGGTTCTGTTGTTAGTTGGTATGGTTTAACCTCC
ATTGTTGGCAATGATCGAAACATTGCCGGCACAAAATTATTATTCGCAGT
CTCCACAGATGCAGTGATGGATGATGTTGATGTAGAAATTCGAGGTGATA
ACATATCCTCAATCTCATTGGTCGATTCATTTGAAGCAATACCTTGATTG
GTTGGTTTAGCTAATGCGATATCATGGTCTCTAGGTGTTAATCTATCATC
TTTCTGATCAGCTGATCGAAAAAATGCACCGTTTTGATTGACCAGTTCTT
CATCTCTATGCTTCAAATCACCAACCTCTATGAAAGTTCCTTTATTTTCT
TTAGTAGTTGTTCCTTTATCAAAACGTTCGATTGTCATTGGTTTATCGCT
TATAGACAAAGTCTTTTCAACGCAACTTTCTTCAGTTGAACTGTCCTTAA
CCGTTATATTTATTTTCTCATCTATAACCAATTCATCACTGTTCTCAAGT
TCTATTTTTGTTTCTTCACGGCTCAGTGACGTCTCTACCACTTCAATAAC
GGTCGAATTATCGTCAGAGGGCGCCAGAGGTGTGATATCGTTTTCGTCAC
GCAAAGAGCTAGAAGAATTTGGTGAACAAGTTAGAGGTAGAATTTTATCT
TCAGCAAGGTCGATACGAGTTCGAGGAGAAATTGAAATCTCATCGCCCTC
GTTTTCACTCTCTTTTTGCTCATTTGTAGGAGCTTTTTCATCTCCAATTT
TCATTTTCTGAATTAACGAGCATTCTTCGGTGTTGGTGGATTTGTCAGTT
GACACCTGAAGAAGGGAATAGAGAAATTTGTTATAATTTCATTTCCTTTG
TCTGTTAATTGGGCCATTCCATTTTTTAGACTGATTTTAGTTTGTCCACC
GTCACGTTTAAGCTACGAAAAGAAATTTCCAACGTTTTCTTTACANTTGT
TGAAATTCAGGGAATACTTCTGAATTGGCGGCTCGCTTTGAGGGACCTCT
CATTCTGTATCTCGGTGTATTGTCCATGGAAACATTCGGGTTTATGGAAG
TAATGGAGAAAGGTGGTTGCTGATTGACAGCTCTGGTCAAAGGTTGGTAT
TGACTGACTGGTTCAATAAAAGCATGATTTTGATTGGATGCTTCTGCATA
AGAACGATTGTGATTGGATGGCTCTAAAACTGGTGGATTCCTATCGGCTG
TTAAGTTTCTCTCTTTGTATTTTTCGACAATTTGGTCGACTTTCCTTTCA
GGTTCTGTTGTTAGTTGGTATGGTTTAACCTCCATTGTTGGCAATGATCG
AAACATTGCCGGCACAAAATTATTATTCGCAGTCTCCACAGATGCAGTGA
TGGATGATGTTGATGTAGAAATTCGAGGTGATAACATATCCTCAATCTCA
TTGGTCGATTCATTTGAAGCAATACCTTGATTGGTTGGTTTAGCTAATGC
GATATCATGGTCTCTAGGTGTTAATCTATCATCTTTCTGATCAGCTGATC
GAAAAAATGCACCGTTTTGATTGACCAGTTCTTCATCTCTATGCTTCAAA
TCACCAACCTCTATGAAAGTTCCTTTATTTTCTTTAGTAGTTGTTCCTTT
ATCAAAACGTTCGATTGTCATTGGTTTATCGCTTATAGACAAAGTCTTTT
CTACGCAACTTTCTTCAGTTGAACTGTCCTTAACCGGTATATCTATTTTC
TCATCTATAACCAATTCATCACTGTTCTCAAGTTCTATTTTTGTTTCTTC
ACGGCTCAGTGACGTCTCTACCACTTCAATAACGGTCGAATTATCGTCAG
AGGGCGCCAGAGGTGTGATATCGTTTTCGTCACGCAAAGAGCTAGAAGAA
TTTGGTGAACAAGTTAGAGGTAGAATTTTATCTTCAGCAAGGTCGATACG
AGTTCGAGGAGAAATTGAAATCTCATCGCCCTCGTTTTCACTCTCTTTTT
GCTCATTTGTAGGAGCTTTTTCATCTCCAATTTTCATTTTCTGAATTAAC
GAGCATTCTTCGGTGTTGGTGGATTTGTCAGTTGACACCTGAAGAAGGGA
ATAGAGAAATTTGTTATAATTTCATTTCCTTTGTCTGTTAATTGGGCCAT
TCCATTTTTTAGACTGATTTTAGTTTGTCCACCGTCACGTTTAAGCTACG
AAAAGAAATTTCCAACGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017628-exon-sc0000271-1575043694:36219..36627 | TCONS_00017628-exon-sc0000271-1575043694:36219..36627 | Clytia hemisphaerica | exon |
| TCONS_00017628-exon-sc0000271-1575043694:32408..36148 | TCONS_00017628-exon-sc0000271-1575043694:32408..36148 | Clytia hemisphaerica | exon |
| TCONS_00017628-exon-sc0000271-1510915933:36219..36627 | TCONS_00017628-exon-sc0000271-1510915933:36219..36627 | Clytia hemisphaerica | exon |
| TCONS_00017628-exon-sc0000271-1510915933:32408..36148 | TCONS_00017628-exon-sc0000271-1510915933:32408..36148 | Clytia hemisphaerica | exon |
| TCONS_00017628-exon-sc0000271-1491911889:36219..36627 | TCONS_00017628-exon-sc0000271-1491911889:36219..36627 | Clytia hemisphaerica | exon |
| TCONS_00017628-exon-sc0000271-1491911889:32408..36148 | TCONS_00017628-exon-sc0000271-1491911889:32408..36148 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000271 | supercontig | sc0000271:32408..36627 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003961 | FN3_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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