TCONS_00017543 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017543
Unique NameTCONS_00017543
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1174

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017543 ID=TCONS_00017543|Name=TCONS_00017543|organism=Clytia hemisphaerica|type=transcript|length=1174bp
tttatttttagataaaaaatacaTAGCAAAAAATTAGAATAGAAAATACC
TGGAATTTGTTGgaaactttatattttaaaatgATTCGTTTCATCTTGAT
CCAAAACAGAGCTGGTAAAACTCGATTAGCCAAATGGTATATTCCTTTAG
ATGATGATGAAAAACAGAAGTTAATCGAGGAAGTTCACGCTACAGTCACC
GTGCGAGATGCTAAACATACAAATTTTGTCGAGTTCCGTAGTTTCAAGAT
TGTTTACAGACGGTATGCTGGTTTATATTTCTGCTTCTGTGTCGACGTAG
CTGATAACAACTTGATGTACTTAGAGGCTATCCACAATTTCGTAGAGGTA
TTAAATGAATACTTCCACAACGTATGCGAATTAGATTTGGTGTTTAATTT
TTATAAGGTCTACTCAGTGGTGGATGAGATGTTTTTAGCTGGTGAAATCA
GGGAGACGAGTCAAGCTAAAGTTCTGAAACAGTTGCACATGATTACTACA
CTGGAATAATCATTCGGGAAAGTAGACCCTCTAACTCAAACCTAGCTTAT
CTAAATAATAGTGCACTAGTCGTCTTTTAACTGACCGAACTTAACCGAGT
TATCTTTTCTGACATTCAACTTGAACATTTTCTGCTTTTTTGGGTCATTA
GGATACATGTTTATAAATCATTTTGGTGTATTTACCTTTTTTCTATCATT
TATGGGTTTGATTAAAGAGGGTTTACTTTTCGACCCTTTATTTGACAGGT
CAACTTTTTTTAACCGATCctctaaattaaaaaatttgtatttaattctt
ttttttaattatgtcgtttctttttgtctatgggtttatttttttgttat
aaatttttcTAATTATTCAGGAATTATTACTCGCTTTTTGTTTGCCTTTC
AAAGGCAAATTTTGGTCAATGTTATGCTTTCTTGACATTGTAAATGAGGA
CCCAACTCAGCGAAGAATGCTCTAGATATCAATTACACTTCCAAGCATTG
TTTCATTCAGGTTGTAATAAAATCGTTAATGTGGTGTGGTGATTTTTTAG
CTTTCCTGTGTTAAACCGGTAACATTGTGTATATATAGgaatactttttg
aaaaggaaagaaatctACTATTCTACCTGGTAATTACCCCGTTATTCCAT
AGTACAATGATCCTTTTGTATTCA
Run BLAST on NCBI

protein sequence of TCONS_00017543-protein

>TCONS_00017543-protein ID=TCONS_00017543-protein|Name=TCONS_00017543-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MIRFILIQNRAGKTRLAKWYIPLDDDEKQKLIEEVHATVTVRDAKHTNFV
EFRSFKIVYRRYAGLYFCFCVDVADNNLMYLEAIHNFVEVLNEYFHNVCE
LDLVFNFYKVYSVVDEMFLAGEIRETSQAKVLKQLHMITTLE
Run BLAST on NCBI

transcript from alignment at sc0000269:110750..114900-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017543 ID=TCONS_00017543|Name=TCONS_00017543|organism=Clytia hemisphaerica|type=transcript|length=4151bp|location=Sequence derived from alignment at sc0000269:110750..114900- (Clytia hemisphaerica)
TTTATTTTTAGATAAAAAATACATAGCAAAAAATTAGAATAGAAAATACC
TGGAATTTGTTGGAAACTTTATATTTTAAAATGGTAAGTATTTTCCAATG
CTTCGAGAAAAAGGAGTCAAAGCATCCTTTTATCTCATTTGCTTTTTCAA
ATTTTTAACAATTTAGAAATGATCCGTCTCAATTGCTTCAATGATATGAA
CAAAGTCTTCTATGAAATTTTTTAATTATTGTATTGATATAAAACCTTTT
GTAACTGTGTTCATTGATCATCCGTCGAAATAAATTCAAAATTTCCTCTT
GTTGTTCTTCTTCCAGATTCGTTTCATCTTGATCCAAAACAGAGCTGGTA
AAACTCGATTAGCCAAATGGTATATTCCTTTAGATGATGATGAAAAACAG
AAGTTAATCGAGGAAGTTCACGCTACAGTCACCGTGCGAGATGCTAAACA
TACAAATTTTGTCGAGGTCTGTTTTAAAATGGGATGCGAATAATTTTAAT
GTTGTTGTGATTGAGCAACCAAAAGCTCTTATTTTGACTTTCAAGCCTAG
CTTGCATATCAAAATTTATNAAACCTACATTTGTTGTGATTGAGCAATCA
AAAGCTCTTATTTTGACTTTCAAGCCTAGCTCGCATATCAAAATTTATCT
AAAAGGATTTTTTTATAAAAAGTAATTTTTCAGTCAGGGAAAAACCGTTA
AAGATAGGGGACACAGCCGTTAAAACCTATTTGTCCTTTGTGTCTGTCTG
TTGTAGCAAAACAATTCTCTTTTTTAAGAATTAAATTGGCTCAACTTTCA
TCCATAAAATATCATTTAGTATAACCATAAGGCTCCTTCCCTTTCTTTTG
TAGTTCCGTAGTTTCAAGATTGTTTACAGACGGTATGCTGGTTTATATTT
CTGCTTCTGTGTCGACGTAGCTGATAACAACTTGATGTACTTAGAGGCTA
TCCACAATTTCGTAGAGGTATGATAGAATATGCTTCGTTTTCTTACTTTT
TCTGTTTTTCAAGTTTTGTTAAGATGGTGTAAAGATATTTTACAAGAGCA
GTAAATAAAGATTCTTCTCTGAAAAGTTAACCGTTGCACCAAGAACGTTT
TAAAACACGATCCATCCCTTTTACTTCATTTCGATTGCTTTATTCTTCCT
TCTTCACACAGTAAATTATAACCTGGACCTAATCACTGAACATTCAAATT
GTCAGCAGAATTTCATAGATCTTCAGAAAGCATACTGCATACAGCATAAT
TTCATTATTTTTATCGAGATAGATAATTCGAGTCTTTATGCTTCTTTAGG
TATTAAATGAATACTTCCACAACGTATGCGAATTAGATTTGGTGTTTAAT
TTTTATAAGGTATGTACTTCTTTTATGAGTGAATTAACCTGGGATTTAAG
TTAAAGTACCTCGATACATCAGGCGAATCAGGATATTGTAAACATGCTGT
AGCCATCTTGTTTTGTTTGCTTCTCTACAACAAATAAAGTACAATATAAG
ATACGTGCGTCCCCTCACCTGCTAGAGCATATTGTACTTCAGCTAGTATG
CGTATCAACAATTTATTTTCATGATTCTCGACAAGGAGCTTTAGTTATTT
AGCTAGAGGATCAAGTTCGTTTTTAAAGGGAAACTGCGTGTGATCTCACA
CCATTGAGTTTGCGTAATTCACTCACTTTGCCTTTTTATTTCTTATATTA
GCGTCCAAAATACATTCCAATTGCTAAATTTTAAGTAATAGTGTCATTAT
AGAGAAATTACTTTTAATTAGTTAGTTGTGAGTTTAATATCGCATAAAGA
CTGGCGCCTGAATGTTTCTAAAGCCACAAAACTACAAAACTGTATAGTAG
ACCGACCAATAGCCCACGCGAAGCCCATCTTGAAGCTCTCGAATTTGATG
AAATATTCAATTTGTTGTTTTGCAACTTCTCTATTGCATAATGAAAGCAA
AGAGATAAACATTCTTTCGGTTTCACTTTCAATTCAAATATTTGACCGAC
TCCTCTTCAAAGAAAACGTCGGTTGCGTATGACATTTAGTTGTGTGGGTA
TTTCTTTTGATTGGAGTAATTTAGAAATACCGGTGCTTTAATTGTGGACC
TAAATTTTCACGATTGAGTCATCGTTTACGATACATAAACCACATTAAAG
TGATTCTAGTTTCACCACAAAACTAAAAATATCCAAATTAATTTTGTCTG
GATAATACAAAACATCGACCTCCTAACAAGTGCATGATTTCTGATCTTGA
AAAGAATTCTACTGTCTTATGAGATCTTTTCCTACGACGATTAGTGCTGT
ATTACCTTGACTTTTCCTCAGAAAATGTCTTAATATAATAAGTTTCGTAG
GTAATAGATATCTCACTAGCCAGGACTTTACTAATGTGAACTTCGAATTA
AAAGCCCCTAGCTTACCGAGAAAGTCGCACCTAAACCGCTAATATATAAG
TCTGTTTATTGGACCTACCTAAGGTAGTCCCCTTTAAATTAACCCTTGTC
CGTTCGTTCGTTCGTTCGTCCGTTCGTTCGTTCGCTCGTCCGTCTGTTGC
CAGCTTTTCTCGGGATCGGCTGATTAGTTTTTTCTAATTTTTTGCACAAT
GATGCAAAATGGCAATGCCCCAAATGTGACGGAGCCCGATTTTCGAAAAA
AAAAATTTTCCAGCCGAAAATGGCGGAAATATGCCGGAAAAACTGGTTTT
TCGGCATTTTCTCGAGATTTCATCATTAGTTTTTTCTGATTTTTTGCTCA
AAGATGCGTATTAACAATGCCCAAAACATGGCCTAGTCCGATTTTTGAGA
AAAAAAATTTTCCAGCCGGAAATATGCCGGAAATCGCCGTTTTTCTGGAT
TTTCATTGGACTTTTTCCATATAATTGGTTGTTTTTTCATTCAAAAACAT
TATTAATAGCAATGCCCACCATCAAGCATGTTTCAATTTTCAATAAAATT
GATTTTTGAAGCTGGAACTTTCTAAAATTCGCCGGAACAGCCGATTTTCG
CCGGAAAAACGGTATTTCTTGAATTTCTTTATTTTTGCAGATTTTCATTG
AATTTTTTCCTTATATTTCTATGTTTTTCACACAAAAACATTATTGATAA
CAATGCTCACCATCAAGCATGATTCAATTGTCAATAAAACTGATTTTTGC
AACCAGAACTTCCTATTTATTTTTTCCCCTACAACCCTTCCCTCTCCCCC
CATCAACAATCAATGATGAATTTATTGTGTTGTGTATTTTCGCTAAACGC
TATATTTTCTGACTGATTTTTNTGACTGATTTTTTTTTCATTTTTCTTTT
CGCATTGCTATCTAACTTTCATCATCAGGTAGGTCCATTCAGCATGTTGC
TTGTTTTATCTTTGTCTTTCTGTTATATTTGCAGGTCTACTCAGTGGTGG
ATGAGATGTTTTTAGCTGGTGAAATCAGGGAGACGAGTCAAGCTAAAGTT
CTGAAACAGTTGCACATGATTACTACACTGGAATAATCATTCGGGAAAGT
AGACCCTCTAACTCAAACCTAGCTTATCTAAATAATAGTGCACTAGTCGT
CTTTTAACTGACCGAACTTAACCGAGTTATCTTTTCTGACATTCAACTTG
AACATTTTCTGCTTTTTTGGGTCATTAGGATACATGTTTATAAATCATTT
TGGTGTATTTACCTTTTTTCTATCATTTATGGGTTTGATTAAAGAGGGTT
TACTTTTCGACCCTTTATTTGACAGGTCAACTTTTTTTAACCGATCCTCT
AAATTAAAAAATTTGTATTTAATTCTTTTTTTTAATTATGTCGTTTCTTT
TTGTCTATGGGTTTATTTTTTTGTTATAAATTTTTCTAATTATTCAGGAA
TTATTACTCGCTTTTTGTTTGCCTTTCAAAGGCAAATTTTGGTCAATGTT
ATGCTTTCTTGACATTGTAAATGAGGACCCAACTCAGCGAAGAATGCTCT
AGATATCAATTACACTTCCAAGCATTGTTTCATTCAGGTTGTAATAAAAT
CGTTAATGTGGTGTGGTGATTTTTTAGCTTTCCTGTGTTAAACCGGTAAC
ATTGTGTATATATAGGAATACTTTTTGAAAAGGAAAGAAATCTACTATTC
TACCTGGTAATTACCCCGTTATTCCATAGTACAATGATCCTTTTGTATTC
A

Coding sequence (CDS) from alignment at sc0000269:110750..114900-

>TCONS_00017543 ID=TCONS_00017543|Name=TCONS_00017543|organism=Clytia hemisphaerica|type=CDS|length=2145bp|location=Sequence derived from alignment at sc0000269:110750..114900- (Clytia hemisphaerica)
GTCTACTCAGTGGTGGATGAGATGTTTTTAGCTGGTGAAATCAGGGAGAC
GAGTCAAGCTAAAGTTCTGAAACAGTTGCACATGATTACTACACTGGAAT
AAGTATTAAATGAATACTTCCACAACGTATGCGAATTAGATTTGGTGTTT
AATTTTTATAAGTTCCGTAGTTTCAAGATTGTTTACAGACGGTATGCTGG
TTTATATTTCTGCTTCTGTGTCGACGTAGCTGATAACAACTTGATGTACT
TAGAGGCTATCCACAATTTCGTAGAGATTCGTTTCATCTTGATCCAAAAC
AGAGCTGGTAAAACTCGATTAGCCAAATGGTATATTCCTTTAGATGATGA
TGAAAAACAGAAGTTAATCGAGGAAGTTCACGCTACAGTCACCGTGCGAG
ATGCTAAACATACAAATTTTGTCGAGATGGTCTACTCAGTGGTGGATGAG
ATGTTTTTAGCTGGTGAAATCAGGGAGACGAGTCAAGCTAAAGTTCTGAA
ACAGTTGCACATGATTACTACACTGGAATAAGTATTAAATGAATACTTCC
ACAACGTATGCGAATTAGATTTGGTGTTTAATTTTTATAAGTTCCGTAGT
TTCAAGATTGTTTACAGACGGTATGCTGGTTTATATTTCTGCTTCTGTGT
CGACGTAGCTGATAACAACTTGATGTACTTAGAGGCTATCCACAATTTCG
TAGAGATTCGTTTCATCTTGATCCAAAACAGAGCTGGTAAAACTCGATTA
GCCAAATGGTATATTCCTTTAGATGATGATGAAAAACAGAAGTTAATCGA
GGAAGTTCACGCTACAGTCACCGTGCGAGATGCTAAACATACAAATTTTG
TCGAGATGGTCTACTCAGTGGTGGATGAGATGTTTTTAGCTGGTGAAATC
AGGGAGACGAGTCAAGCTAAAGTTCTGAAACAGTTGCACATGATTACTAC
ACTGGAATAAGTATTAAATGAATACTTCCACAACGTATGCGAATTAGATT
TGGTGTTTAATTTTTATAAGTTCCGTAGTTTCAAGATTGTTTACAGACGG
TATGCTGGTTTATATTTCTGCTTCTGTGTCGACGTAGCTGATAACAACTT
GATGTACTTAGAGGCTATCCACAATTTCGTAGAGATTCGTTTCATCTTGA
TCCAAAACAGAGCTGGTAAAACTCGATTAGCCAAATGGTATATTCCTTTA
GATGATGATGAAAAACAGAAGTTAATCGAGGAAGTTCACGCTACAGTCAC
CGTGCGAGATGCTAAACATACAAATTTTGTCGAGATGGTCTACTCAGTGG
TGGATGAGATGTTTTTAGCTGGTGAAATCAGGGAGACGAGTCAAGCTAAA
GTTCTGAAACAGTTGCACATGATTACTACACTGGAATAAGTATTAAATGA
ATACTTCCACAACGTATGCGAATTAGATTTGGTGTTTAATTTTTATAAGT
TCCGTAGTTTCAAGATTGTTTACAGACGGTATGCTGGTTTATATTTCTGC
TTCTGTGTCGACGTAGCTGATAACAACTTGATGTACTTAGAGGCTATCCA
CAATTTCGTAGAGATTCGTTTCATCTTGATCCAAAACAGAGCTGGTAAAA
CTCGATTAGCCAAATGGTATATTCCTTTAGATGATGATGAAAAACAGAAG
TTAATCGAGGAAGTTCACGCTACAGTCACCGTGCGAGATGCTAAACATAC
AAATTTTGTCGAGATGGTCTACTCAGTGGTGGATGAGATGTTTTTAGCTG
GTGAAATCAGGGAGACGAGTCAAGCTAAAGTTCTGAAACAGTTGCACATG
ATTACTACACTGGAATAAGTATTAAATGAATACTTCCACAACGTATGCGA
ATTAGATTTGGTGTTTAATTTTTATAAGTTCCGTAGTTTCAAGATTGTTT
ACAGACGGTATGCTGGTTTATATTTCTGCTTCTGTGTCGACGTAGCTGAT
AACAACTTGATGTACTTAGAGGCTATCCACAATTTCGTAGAGATTCGTTT
CATCTTGATCCAAAACAGAGCTGGTAAAACTCGATTAGCCAAATGGTATA
TTCCTTTAGATGATGATGAAAAACAGAAGTTAATCGAGGAAGTTCACGCT
ACAGTCACCGTGCGAGATGCTAAACATACAAATTTTGTCGAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009803XLOC_009803Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017543-exon-sc0000269-1575043694:114818..114900TCONS_00017543-exon-sc0000269-1575043694:114818..114900Clytia hemisphaericaexon
TCONS_00017543-exon-sc0000269-1575043694:114435..114584TCONS_00017543-exon-sc0000269-1575043694:114435..114584Clytia hemisphaericaexon
TCONS_00017543-exon-sc0000269-1575043694:113934..114047TCONS_00017543-exon-sc0000269-1575043694:113934..114047Clytia hemisphaericaexon
TCONS_00017543-exon-sc0000269-1575043694:113542..113601TCONS_00017543-exon-sc0000269-1575043694:113542..113601Clytia hemisphaericaexon
TCONS_00017543-exon-sc0000269-1575043694:110750..111516TCONS_00017543-exon-sc0000269-1575043694:110750..111516Clytia hemisphaericaexon
TCONS_00017543-exon-sc0000269-1510915933:114818..114900TCONS_00017543-exon-sc0000269-1510915933:114818..114900Clytia hemisphaericaexon
TCONS_00017543-exon-sc0000269-1510915933:114435..114584TCONS_00017543-exon-sc0000269-1510915933:114435..114584Clytia hemisphaericaexon
TCONS_00017543-exon-sc0000269-1510915933:113934..114047TCONS_00017543-exon-sc0000269-1510915933:113934..114047Clytia hemisphaericaexon
TCONS_00017543-exon-sc0000269-1510915933:113542..113601TCONS_00017543-exon-sc0000269-1510915933:113542..113601Clytia hemisphaericaexon
TCONS_00017543-exon-sc0000269-1510915933:110750..111516TCONS_00017543-exon-sc0000269-1510915933:110750..111516Clytia hemisphaericaexon
TCONS_00017543-exon-sc0000269-1491911889:114818..114900TCONS_00017543-exon-sc0000269-1491911889:114818..114900Clytia hemisphaericaexon
TCONS_00017543-exon-sc0000269-1491911889:114435..114584TCONS_00017543-exon-sc0000269-1491911889:114435..114584Clytia hemisphaericaexon
TCONS_00017543-exon-sc0000269-1491911889:113934..114047TCONS_00017543-exon-sc0000269-1491911889:113934..114047Clytia hemisphaericaexon
TCONS_00017543-exon-sc0000269-1491911889:113542..113601TCONS_00017543-exon-sc0000269-1491911889:113542..113601Clytia hemisphaericaexon
TCONS_00017543-exon-sc0000269-1491911889:110750..111516TCONS_00017543-exon-sc0000269-1491911889:110750..111516Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017543-proteinTCONS_00017543-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:110750..114900 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
144.962	147.348	125.213	123.357	76.7978	60.8826	127.431	123.06	130.026	109.368	82.9871	85.8932	60.1492	55.1272	87.3038	90.8676	96.7344	101.667	52.8772	64.3702	92.6329	89.2565	83.1266	76.1107	49.38	57.1049	98.8568	75.1054	73.6543	67.4755
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022775AP_mu_sigma_su
IPR016635AP_complex_ssu
IPR000804Clathrin_sm-chain_CS
IPR011012Longin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008565protein transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0030117membrane coat
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0015031 protein transport
biological_process GO:0006810 transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030117 membrane coat
molecular_function GO:0008565 protein transporter activity
Blast
[Close]
BLAST of TCONS_00017543 vs. Swiss-Prot (Human)
Match: AP2S1 (AP-2 complex subunit sigma OS=Homo sapiens GN=AP2S1 PE=1 SV=2)

HSP 1 Score: 264.618 bits (675), Expect = 2.648e-87
Identity = 127/142 (89.44%), Postives = 133/142 (93.66%), Query Frame = 3 
Query:   81 MIRFILIQNRAGKTRLAKWYIPLDDDEKQKLIEEVHATVTVRDAKHTNFVEFRSFKIVYRRYAGLYFCFCVDVADNNLMYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYSVVDEMFLAGEIRETSQAKVLKQLHMITTLE 506
            MIRFILIQNRAGKTRLAKWY+  DDDEKQKLIEEVHA VTVRDAKHTNFVEFR+FKI+YRRYAGLYFC CVDV DNNL YLEAIHNFVEVLNEYFHNVCELDLVFNFYKVY+VVDEMFLAGEIRETSQ KVLKQL M+ +LE
Sbjct:    1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE 142
The following BLAST results are available for this feature:
BLAST of TCONS_00017543 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AP2S12.648e-8789.44AP-2 complex subunit sigma OS=Homo sapiens GN=AP2S... [more]
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