TCONS_00017535 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017535
Unique NameTCONS_00017535
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1877

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017535 ID=TCONS_00017535|Name=TCONS_00017535|organism=Clytia hemisphaerica|type=transcript|length=1877bp
CTGTAGAAATAGTGGAGCGCAATTTTCAAGTAAATCTTGAGGTGCTTCTC
AACTTTGATCATAACGTCCGTGCTGGCGATAAAGAATTTGTAAGCGAAAA
TCATCAAGACTGTGAACGCATACGGGTACTTGCTTGCTAAAGTTTGCTGA
GGTTTACCGTTATCCATTTCACCGTATTGTTTAGAAAGAGCCGTAGTACG
GGGGCTTTTACGTACACCAGGTTTGGAGGCGGGTGACTTTTCAGAGTAAC
ACGCATACATCGATTGTGACGGTTTGGACGATAATGCTTGAGCGTCGGGT
TGAGCGTCATTTGCTTGATGGATGTCACTGAAACTCTTGATAAGTGGCAT
GGTGATTTTTCGTTTTAAGAAATTTGGTAAATAGTCATTAATGCCACTAG
CTTGGCTATTTGCTGGGGTGGACTCTAAAGGACCACCGCAGGAGTCAATC
GGCACTGAAGGGTCGCTGTGGGAGTTTTCCGACAATGAAGGGCCACCGTA
GGAGTCGATCGGTGCTAAAGGCCCACCGGAAGAATTGTTTGACCCCGAGG
AGCCGCTGCGAGATTTGTTACGAGGTGATCTTCTAAGGGTTGAAGGGCTG
CTGTAAGTATTGTCTGACGGTGGAGGGTTGAGAGAGTTGTTACGGGTTGA
AGGGCCGCCGTAAGAATTGTTACGGGTTGAAGGGCCGCTGTGAGAGTTGT
TACGAGTTGTAAGGCCGCCGTAAGAGTTGTTCGACACTGGAAGGTCGTCG
TAAGATTTATTCGACGCTGAAGAACCTCCGTAAGAGTTATTACGGGTTGA
AGGTCCGCCGTAAGAATTGTTGCGGGTTGAAGGTCCGCCGTAAGAATTGT
TGCGGGTTGAAGGGCCACTGTGAGAGTTGTTACGAGTTGTAAGGCCGCCG
TAAGAGTTGTTCGACACTGGAGGGTCGTCGTAAGAGTTGTTCGACACTGG
AAGGTCGTCGCAAGAGTTATTCGACGCTGAAGAACCTCCGTAAGAGTTAT
TACGGGTTGAAGGTCCGCCGTAAGAATTGTTACGGGTTGAAGGTCCGCCG
TAAGAATTGTTACGGGCGGAAGGGTCGCTGTGAGAGTTTTCTGACAATGA
AGATTCACCGTAGGAGTCGATCGGTGCTAAAGGTCCGCTTAGTGAGCTGT
TACGACTTGTAGGTCCGCCGTAAGAATTGTTACGGGCTGAAGGGCCACTT
TGAGAGTTGTTGCGACTTGTAGAGCCGCCGTAAGAATAGTTACGGGCTGA
AGGGTCGATGTGAGAGTTGTTACGACTTGCAGGGCCGCCGTACGAATTAT
TACGGGCTGAAGGGCCGCTTTGAGAGTTGTTACGACTTGTAGAGCCACCG
TAAGAATAGTTACGGGCTGAAGGGTCGATGTGAGAGTTGTTGCGACTTGC
AGGGCCTCCGTACGAATTGTTACGGGCTAAAGGGTCACTGTGAGAGTTGT
TACGACTTGTAGGACCGCCGTAAGAGTTGTTCGACGCTGAAGAGCTGACG
ATAGAGTTGTTCGACGCTGAAGAACCGTCATACGAGTCGATCTCTTCATC
TGGAACGTAGTCATTGTTTGAGTTTTGATAGCTTCGGAATGGATTCCACA
GTCCGAAGGGTGAGCGAAGTAATCGGTTGAAAACGCTTGCTTGAAATGAA
TGGACTGTTTTCCCATCTCGTAGAATCATATGTTGGCTTTCAAAAGGTGA
ATAAAAACTTCCATCCCGCAATATCATCGGCATGCTTGCTGTTGAAGTAT
AGAAGACAGGTTGGTGTCTGTATCAGCTGGATGCAAAATTTGTGTTGCAA
tgtgaataaaattaaaaaactttttcacgaATCAATGTTTCATGTCTGCA
GATATTCAGCtttccgccatcttgaat
Run BLAST on NCBI

transcript from alignment at sc0000269:52926..55192-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017535 ID=TCONS_00017535|Name=TCONS_00017535|organism=Clytia hemisphaerica|type=transcript|length=2267bp|location=Sequence derived from alignment at sc0000269:52926..55192- (Clytia hemisphaerica)
CTGTAGAAATAGTGGAGCGCAATTTTCAAGTAAATCTTGAGGTGCTTCTC
AACTTTGATCATAACGTCCGTGCTGGCGATAAAGAATTTGTAAGCGAAAA
TCATCAAGACTGTGAACGCATACGGGTACTTGCTTGCTAAAGTTTGCTGA
GGTTTACCGTTATCCATTTCACCGTATTGTTTAGAAAGAGCCGTAGTACG
GGGGCTTTTACGTACACCAGGTTTGGAGGCGGGTGACTTTTCAGAGTAAC
ACGCATACATCGATTGTGACGGTTTGGACGATAATGCTTGAGCGTCGGGT
TGAGCGTCATTTGCTTGATGGATGTCACTGAAACTCTTGATAAGTGGCAT
GGTGATTTTTCGTTTTAAGAAATTTGGTAAATAGTCATTAATGCCACTAG
CTTGGCTATTTGCTGGGGTGGACTCTAAAGGACCACCGCAGGAGTCAATC
GGCACTGAAGGGTCGCTGTGGGAGTTTTCCGACAATGAAGGGCCACCGTA
GGAGTCGATCGGTGCTAAAGGCCCACCGGAAGAATTGTTTGACCCCGAGG
AGCCGCTGCGAGATTTGTTACGAGGTGATCTTCTAAGGGTTGAAGGGCTG
CTGTAAGTATTGTCTGACGGTGGAGGGTTGAGAGAGTTGTTACGGGTTGA
AGGGCCGCCGTAAGAATTGTTACGGGTTGAAGGGCCGCTGTGAGAGTTGT
TACGAGTTGTAAGGCCGCCGTAAGAGTTGTTCGACACTGGAAGGTCGTCG
TAAGATTTATTCGACGCTGAAGAACCTCCGTAAGAGTTATTACGGGTTGA
AGGTCCGTCGTAAGAATTGTTACGGGTTGAAGGTCCGCCGTAAGAATTGT
TCGACACTGGAAGGTCGTCGCAAGAGTTATTCGACGCTGAAGAACCTCCG
TAAGAGTTATTACGGGTTGAAGGTCCGTCGTAAGAATTGTTACGGGTTGA
AGGTCCGCCGTAAGAATTGTTGCGGGTTGAAGGTCCGCCGTAAGAATTGT
TGCGGGTTGAAGGGCCACTGTGAGAGTTGTTACGAGTTGTAAGGCCGCCG
TAAGAGTTGTTCGACACTGGAGGGTCGTCGTAAGAGTTGTTCGACACTGG
AAGGTCGTCGCAAGAGTTATTCGACGCTGAAGAACCTCCGTAAGAGTTAT
TACGGGTTGAAGGTCCGTCGTAAGAATTGTTACGGGTTGAAGGTCCGCTT
TGTGAGTTGTTACGACTTGTAGGACCGCCGTAAGAGTTGTTCGACGCTGA
AGAACCTCCGTAAGAGTTATTACGGGTTGAAGGTCCGTCGTAAGAATTGT
TACGGGTTGAAGGTCCGCCGTAAGAATTGTTACGGGTTGAAGGTCCGCTT
TGTGAGTTGTTACGACTTGTAGGACCGCCGTAAGAATTGTTACGGGCTGA
AGGATCGCTGTAAGAGTTGTTACGACTTGTAGGTCCGCCGTAAGAATTGT
TACGGGCGGAAGGGTCGCTGTGAGAGTTTTCTGACAATGAAGATTCACCG
TAGGAGTCGATCGGTGCTAAAGGTCCGCTTAGTGAGCTGTTACGACTTGT
AGGTCCGCCGTAAGAATTGTTACGGGCTGAAGGGCCACTTTGAGAGTTGT
TGCGACTTGTAGAGCCGCCGTAAGAATAGTTACGGGCTGAAGGGTCGATG
TGAGAGTTGTTACGACTTGCAGGGCCGCCGTACGAATTATTACGGGCTGA
AGGGCCGCTTTGAGAGTTGTTACGACTTGTAGAGCCACCGTAAGAATAGT
TACGGGCTGAAGGGTCGATGTGAGAGTTGTTGCGACTTGCAGGGCCTCCG
TACGAATTGTTACGGGCTAAAGGGTCACTGTGAGAGTTGTTACGACTTGT
AGGACCGCCGTAAGAGTTGTTCGACGCTGAAGAGCTGACGATAGAGTTGT
TCGACGCTGAAGAACCGTCATACGAGTCGATCTCTTCATCTGGAACGTAG
TCATTGTTTGAGTTTTGATAGCTTCGGAATGGATTCCACAGTCCGAAGGG
TGAGCGAAGTAATCGGTTGAAAACGCTTGCTTGAAATGAATGGACTGTTT
TCCCATCTCGTAGAATCATATGTTGGCTTTCAAAAGGTGAATAAAAACTT
CCATCCCGCAATATCATCGGCATGCTTGCTGTTGAAGTATAGAAGACAGG
TTGGTGTCTGTATCAGCTGGATGCAAAATTTGTGTTGCAATGTGAATAAA
ATTAAAAAACTTTTTCACGAATCAATGTTTCATGTCTGCAGATATTCAGC
TTTCCGCCATCTTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009800XLOC_009800Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017535-exon-sc0000269-1575043694:54391..55192TCONS_00017535-exon-sc0000269-1575043694:54391..55192Clytia hemisphaericaexon
TCONS_00017535-exon-sc0000269-1575043694:54031..54240TCONS_00017535-exon-sc0000269-1575043694:54031..54240Clytia hemisphaericaexon
TCONS_00017535-exon-sc0000269-1575043694:53851..53880TCONS_00017535-exon-sc0000269-1575043694:53851..53880Clytia hemisphaericaexon
TCONS_00017535-exon-sc0000269-1575043694:52926..53760TCONS_00017535-exon-sc0000269-1575043694:52926..53760Clytia hemisphaericaexon
TCONS_00017535-exon-sc0000269-1510915933:54391..55192TCONS_00017535-exon-sc0000269-1510915933:54391..55192Clytia hemisphaericaexon
TCONS_00017535-exon-sc0000269-1510915933:54031..54240TCONS_00017535-exon-sc0000269-1510915933:54031..54240Clytia hemisphaericaexon
TCONS_00017535-exon-sc0000269-1510915933:53851..53880TCONS_00017535-exon-sc0000269-1510915933:53851..53880Clytia hemisphaericaexon
TCONS_00017535-exon-sc0000269-1510915933:52926..53760TCONS_00017535-exon-sc0000269-1510915933:52926..53760Clytia hemisphaericaexon
TCONS_00017535-exon-sc0000269-1491911889:54391..55192TCONS_00017535-exon-sc0000269-1491911889:54391..55192Clytia hemisphaericaexon
TCONS_00017535-exon-sc0000269-1491911889:54031..54240TCONS_00017535-exon-sc0000269-1491911889:54031..54240Clytia hemisphaericaexon
TCONS_00017535-exon-sc0000269-1491911889:53851..53880TCONS_00017535-exon-sc0000269-1491911889:53851..53880Clytia hemisphaericaexon
TCONS_00017535-exon-sc0000269-1491911889:52926..53760TCONS_00017535-exon-sc0000269-1491911889:52926..53760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:52926..55192 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0471221	0	0	0.0820364	0	0.0120287	0	0.0638689	0	0	0	0.396469	1.23957e-07	0	0	0.013447	0.173082	0	0	0	0	0	0.307183	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017535 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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