TCONS_00017534 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017534
Unique NameTCONS_00017534
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2057

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017534 ID=TCONS_00017534|Name=TCONS_00017534|organism=Clytia hemisphaerica|type=transcript|length=2057bp
CTGTAGAAATAGTGGAGCGCAATTTTCAAGTAAATCTTGAGGTGCTTCTC
AACTTTGATCATAACGTCCGTGCTGGCGATAAAGAATTTGTAAGCGAAAA
TCATCAAGACTGTGAACGCATACGGGTACTTGCTTGCTAAAGTTTGCTGA
GGTTTACCGTTATCCATTTCACCGTATTGTTTAGAAAGAGCCGTAGTACG
GGGGCTTTTACGTACACCAGGTTTGGAGGCGGGTGACTTTTCAGAGTAAC
ACGCATACATCGATTGTGACGGTTTGGACGATAATGCTTGAGCGTCGGGT
TGAGCGTCATTTGCTTGATGGATGTCACTGAAACTCTTGATAAGTGGCAT
GGTGATTTTTCGTTTTAAGAAATTTGGTAAATAGTCATTAATGCCACTAG
CTTGGCTATTTGCTGGGGTGGACTCTAAAGGACCACCGCAGGAGTCAATC
GGCACTGAAGGGTCGCTGTGGGAGTTTTCCGACAATGAAGGGCCACCGTA
GGAGTCGATCGGTGCTAAAGGCCCACCGGAAGAATTGTTTGACCCCGAGG
AGCCGCTGCGAGATTTGTTACGAGGTGATCTTCTAAGGGTTGAAGGGCTG
CTGTAAGTATTGTCTGACGGTGGAGGGTTGAGAGAGTTGTTACGGGTTGA
AGGGCCGCCGTAAGAATTGTTACGGGTTGAAGGGCCGCTGTGAGAGTTGT
TACGAGTTGTAAGGCCGCCGTAAGAGTTGTTCGACACTGGAAGGTCGTCG
TAAGATTTATTCGACGCTGAAGAACCTCCGTAAGAGTTATTACGGGTTGA
AGGTCCGTCGTAAGAATTGTTACGGGTTGAAGGTCCGCCGTAAGAATTGT
TCGACACTGGAAGGTCGTCGCAAGAGTTATTCGACGCTGAAGAACCTCCG
TAAGAGTTATTACGGGTTGAAGGTCCGTCGTAAGAATTGTTACGGGTTGA
AGGTCCGCCGTAAGAATTGTTGCGGGTTGAAGGTCCGCCGTAAGAATTGT
TGCGGGTTGAAGGGCCACTGTGAGAGTTGTTACGAGTTGTAAGGCCGCCG
TAAGAGTTGTTCGACACTGGAGGGTCGTCGTAAGAGTTGTTCGACACTGG
AAGGTCGTCGCAAGAGTTATTCGACGCTGAAGAACCTCCGTAAGAGTTAT
TACGGGTTGAAGGTCCGCCGTAAGAATTGTTACGGGTTGAAGGATCGCTG
TAAGAGTTGTTACGACTTGTAGGTCCGCCGTAAGAATTGTTACGGGCGGA
AGGGTCGCTGTGAGAGTTTTCTGACAATGAAGATTCACCGTAGGAGTCGA
TCGGTGCTAAAGGTCCGCTTAGTGAGCTGTTACGACTTGTAGGTCCGCCG
TAAGAATTGTTACGGGCTGAAGGGCCACTTTGAGAGTTGTTGCGACTTGT
AGAGCCGCCGTAAGAATAGTTACGGGCTGAAGGGTCGATGTGAGAGTTGT
TACGACTTGCAGGGCCGCCGTACGAATTATTACGGGCTGAAGGGCCGCTT
TGAGAGTTGTTACGACTTGTAGAGCCACCGTAAGAATAGTTACGGGCTGA
AGGGTCGATGTGAGAGTTGTTGCGACTTGCAGGGCCTCCGTACGAATTGT
TACGGGCTAAAGGGTCACTGTGAGAGTTGTTACGACTTGTAGGACCGCCG
TAAGAGTTGTTCGACGCTGAAGAGCTGACGATAGAGTTGTTCGACGCTGA
AGAACCGTCATACGAGTCGATCTCTTCATCTGGAACGTAGTCATTGTTTG
AGTTTTGATAGCTTCGGAATGGATTCCACAGTCCGAAGGGTGAGCGAAGT
AATCGGTTGAAAACGCTTGCTTGAAATGAATGGACTGTTTTCCCATCTCG
TAGAATCATATGTTGGCTTTCAAAAGGTGAATAAAAACTTCCATCCCGCA
ATATCATCGGCATGCTTGCTGTTGAAGTATAGAAGACAGGTTGGTGTCTG
TATCAGCTGGATGCAAAATTTGTGTTGCAAtgtgaataaaattaaaaaac
tttttcacgaATCAATGTTTCATGTCTGCAGATATTCAGCtttccgccat
cttgaat
Run BLAST on NCBI

transcript from alignment at sc0000269:52926..55192-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017534 ID=TCONS_00017534|Name=TCONS_00017534|organism=Clytia hemisphaerica|type=transcript|length=2267bp|location=Sequence derived from alignment at sc0000269:52926..55192- (Clytia hemisphaerica)
CTGTAGAAATAGTGGAGCGCAATTTTCAAGTAAATCTTGAGGTGCTTCTC
AACTTTGATCATAACGTCCGTGCTGGCGATAAAGAATTTGTAAGCGAAAA
TCATCAAGACTGTGAACGCATACGGGTACTTGCTTGCTAAAGTTTGCTGA
GGTTTACCGTTATCCATTTCACCGTATTGTTTAGAAAGAGCCGTAGTACG
GGGGCTTTTACGTACACCAGGTTTGGAGGCGGGTGACTTTTCAGAGTAAC
ACGCATACATCGATTGTGACGGTTTGGACGATAATGCTTGAGCGTCGGGT
TGAGCGTCATTTGCTTGATGGATGTCACTGAAACTCTTGATAAGTGGCAT
GGTGATTTTTCGTTTTAAGAAATTTGGTAAATAGTCATTAATGCCACTAG
CTTGGCTATTTGCTGGGGTGGACTCTAAAGGACCACCGCAGGAGTCAATC
GGCACTGAAGGGTCGCTGTGGGAGTTTTCCGACAATGAAGGGCCACCGTA
GGAGTCGATCGGTGCTAAAGGCCCACCGGAAGAATTGTTTGACCCCGAGG
AGCCGCTGCGAGATTTGTTACGAGGTGATCTTCTAAGGGTTGAAGGGCTG
CTGTAAGTATTGTCTGACGGTGGAGGGTTGAGAGAGTTGTTACGGGTTGA
AGGGCCGCCGTAAGAATTGTTACGGGTTGAAGGGCCGCTGTGAGAGTTGT
TACGAGTTGTAAGGCCGCCGTAAGAGTTGTTCGACACTGGAAGGTCGTCG
TAAGATTTATTCGACGCTGAAGAACCTCCGTAAGAGTTATTACGGGTTGA
AGGTCCGTCGTAAGAATTGTTACGGGTTGAAGGTCCGCCGTAAGAATTGT
TCGACACTGGAAGGTCGTCGCAAGAGTTATTCGACGCTGAAGAACCTCCG
TAAGAGTTATTACGGGTTGAAGGTCCGTCGTAAGAATTGTTACGGGTTGA
AGGTCCGCCGTAAGAATTGTTGCGGGTTGAAGGTCCGCCGTAAGAATTGT
TGCGGGTTGAAGGGCCACTGTGAGAGTTGTTACGAGTTGTAAGGCCGCCG
TAAGAGTTGTTCGACACTGGAGGGTCGTCGTAAGAGTTGTTCGACACTGG
AAGGTCGTCGCAAGAGTTATTCGACGCTGAAGAACCTCCGTAAGAGTTAT
TACGGGTTGAAGGTCCGTCGTAAGAATTGTTACGGGTTGAAGGTCCGCTT
TGTGAGTTGTTACGACTTGTAGGACCGCCGTAAGAGTTGTTCGACGCTGA
AGAACCTCCGTAAGAGTTATTACGGGTTGAAGGTCCGTCGTAAGAATTGT
TACGGGTTGAAGGTCCGCCGTAAGAATTGTTACGGGTTGAAGGTCCGCTT
TGTGAGTTGTTACGACTTGTAGGACCGCCGTAAGAATTGTTACGGGCTGA
AGGATCGCTGTAAGAGTTGTTACGACTTGTAGGTCCGCCGTAAGAATTGT
TACGGGCGGAAGGGTCGCTGTGAGAGTTTTCTGACAATGAAGATTCACCG
TAGGAGTCGATCGGTGCTAAAGGTCCGCTTAGTGAGCTGTTACGACTTGT
AGGTCCGCCGTAAGAATTGTTACGGGCTGAAGGGCCACTTTGAGAGTTGT
TGCGACTTGTAGAGCCGCCGTAAGAATAGTTACGGGCTGAAGGGTCGATG
TGAGAGTTGTTACGACTTGCAGGGCCGCCGTACGAATTATTACGGGCTGA
AGGGCCGCTTTGAGAGTTGTTACGACTTGTAGAGCCACCGTAAGAATAGT
TACGGGCTGAAGGGTCGATGTGAGAGTTGTTGCGACTTGCAGGGCCTCCG
TACGAATTGTTACGGGCTAAAGGGTCACTGTGAGAGTTGTTACGACTTGT
AGGACCGCCGTAAGAGTTGTTCGACGCTGAAGAGCTGACGATAGAGTTGT
TCGACGCTGAAGAACCGTCATACGAGTCGATCTCTTCATCTGGAACGTAG
TCATTGTTTGAGTTTTGATAGCTTCGGAATGGATTCCACAGTCCGAAGGG
TGAGCGAAGTAATCGGTTGAAAACGCTTGCTTGAAATGAATGGACTGTTT
TCCCATCTCGTAGAATCATATGTTGGCTTTCAAAAGGTGAATAAAAACTT
CCATCCCGCAATATCATCGGCATGCTTGCTGTTGAAGTATAGAAGACAGG
TTGGTGTCTGTATCAGCTGGATGCAAAATTTGTGTTGCAATGTGAATAAA
ATTAAAAAACTTTTTCACGAATCAATGTTTCATGTCTGCAGATATTCAGC
TTTCCGCCATCTTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009800XLOC_009800Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017534-exon-sc0000269-1575043694:54031..55192TCONS_00017534-exon-sc0000269-1575043694:54031..55192Clytia hemisphaericaexon
TCONS_00017534-exon-sc0000269-1575043694:53851..53880TCONS_00017534-exon-sc0000269-1575043694:53851..53880Clytia hemisphaericaexon
TCONS_00017534-exon-sc0000269-1575043694:52926..53790TCONS_00017534-exon-sc0000269-1575043694:52926..53790Clytia hemisphaericaexon
TCONS_00017534-exon-sc0000269-1510915933:54031..55192TCONS_00017534-exon-sc0000269-1510915933:54031..55192Clytia hemisphaericaexon
TCONS_00017534-exon-sc0000269-1510915933:53851..53880TCONS_00017534-exon-sc0000269-1510915933:53851..53880Clytia hemisphaericaexon
TCONS_00017534-exon-sc0000269-1510915933:52926..53790TCONS_00017534-exon-sc0000269-1510915933:52926..53790Clytia hemisphaericaexon
TCONS_00017534-exon-sc0000269-1491911889:54031..55192TCONS_00017534-exon-sc0000269-1491911889:54031..55192Clytia hemisphaericaexon
TCONS_00017534-exon-sc0000269-1491911889:53851..53880TCONS_00017534-exon-sc0000269-1491911889:53851..53880Clytia hemisphaericaexon
TCONS_00017534-exon-sc0000269-1491911889:52926..53790TCONS_00017534-exon-sc0000269-1491911889:52926..53790Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:52926..55192 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017534 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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