|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017491 ID=TCONS_00017491|Name=TCONS_00017491|organism=Clytia hemisphaerica|type=transcript|length=1943bp
TATCCTGAACTATTTCCCTCTTTAGATAATGtgatttttttctaagaaaa
tagaCTGGATTAGACACTCTAAAATACAGATAAGTAACACTctataaaac
aaagaaatagaAACACAAGTtagtgaaagttttaaaaaacgaagaaaaaa
atctgaaaatcagcCAGTCAAAAAGGGGAAACTTTTATCTACTGAGAAAT
ACTTTCAGCCATCTGATCCttgtattttgataattttacgTCGGATTTTG
CCTAACAGCATAACCATCGCAATCAATCCAACGATACAAAAACATAACAT
ACTAGCTGAGAACTGCAAACGATGCTCAAAAGCTGCTGCAGCTATGATGG
GTCCTAGAATCAATGAAACACGACTGATTGATGAATATACAGCTTGAGTG
AATCCTTGAGTCTCTCTCGGTGTCAGTTTTGTGGTCAAGGATTTGCCAGC
CACAAGGTTAAGCGGGATGGCCGAAAAAACAAATACACATATAATAACAA
ATACTGCCACTCGAGCATGTTTGGGTACAACAACTTCAACCATCAGTAGC
AGAAGAGCCAGACTGGTCAAAATTAAGGAGATTATGATATAATAACAAAT
ACTGCCACTCGAGCATGTTTGGGTACAACAACTTCAACCATCAGTAGCAG
AAGAGCCAGACTGGTCAAAATTAAGGAGATTATGATATAATGCTGGTCTT
TGATTTTGGACTTTCCTGAAAATTTATACATTAGGAAAAAGACAAACATT
AGCCAAACACCACCAACCATATAAACACCACTTGTTTCGGTTTCTTTCCA
ACCATAACCTTCTTGTGTAATCAAGGGCAAGAAAACTTCAAATTCAGTTT
GAATTAAAGACAAAATCAAATCAGAATAAAATATAGCAACAATTTCGATT
GTGGTGATCAGCTCTAGAGCTTGTTGGAATGCGCTTTTCTTTTGAACAAG
TTTGATTGAATCGCCATAGTCAGTTGTTGTCATTTGCGATTCATCGTCAT
TGTAAAATTCTTCATCATCCTCAGTTACAATATTATCATCAATGAAGGTT
CGACCATTTGCTGCTTTATAACATTTGAAATGTTTACGATACTCCTTTGG
TACTAATGGTTTCTCGTCACCATAGGTCACATCTAGTACAGATTCACATA
ATGAAGTTTCTCTGACCCTCTTGAAATCAATTTCATACTCTGTGGGAGGA
ACATTTCCTCTTCTGTCTAACTGCATGTTAGGGTGATACTTTGCACGTTC
TTCAATTAATAATGAGAGGTTTGAGATGTAGAACACACTTATTAGTTGAG
CTAGTAACCATAAAATAGCCATGAATAAACCAGGTGCTGTTCCATTGTCT
ATGGTCCATTTTCCCATAGTGAAATCAACCTTTACTAAAAAGAAGTTCAG
AGCTGGCCCAAAAGTAAGACCTAAAACTCTACCCAGTTCCAGCAGAGCCA
GCGCCCCTGTGCGACTTGATAAAGGATATGTATGAACAATTTCTGAAGTT
GCACAAGCATAAAATCCATCGCCAAGTCCAGCAAAGAAACGACCAGCAAA
GATGAgccattttgaaaatggtaaggCATAGATGATATTACCTACTATTT
CAAAGGTATTCAAAACGATGATTAATTCTTTTGAGCGTTttgttttgtca
aaaattcgaCCAACAACAGGTAAAGACAACACAGCTGAAGTAGGGTATAT
TGCAACCACAATACCCAAAAACCATGTTTTGACGTCAGGGTATCTCTTCA
AATAAAGCCAAATTGAAGGTAATATGATCGCATATTCAGCTCCCAATAAG
AACATACGAATGAAGAAACATATCAGTGTTGCTTTTCGTTTCCGCAAAAA
AACTGGATCTTTTTCCAGGCCTTCAAAACGGTCATCAAAGTTTATTGGGT
TTTTATCtggcatttttttgcatttttattcATTACACTATTA Run BLAST on NCBI transcript from alignment at sc0000269:115662..119327+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017491 ID=TCONS_00017491|Name=TCONS_00017491|organism=Clytia hemisphaerica|type=transcript|length=3666bp|location=Sequence derived from alignment at sc0000269:115662..119327+ (Clytia hemisphaerica)
TATCCTGAACTATTTCCCTCTTTAGATAATGtgatttttttctaagaaaa
tagaCTGGATTAGACACTCTAAAATACAGATAAGTAACACTctataaaac
aaagaaatagaAACACAAGTtagtgaaagttttaaaaaacgaagaaaaaa
atctgaaaatcagcCAGTCAAAAAGGGGAAACTTTTATCTACTGAGAAAT
ACTTTCAGCCATCTGATCCttgtattttgataattttacgTCGGATTTTG
CCTAACAGCATAACCATCGCAATCAATCCAACGATACAAAAACATAACAT
ACTAGCTGAGAACTGCAAACGATGCTCAAAAGCTGCTGCAGCTATGATGG
GTCCTAGAATCAATGAAACACGACTGATTGATGAATATACAGCTTGAGTG
AATCCTTGAGTCTCTCTCGGTGTCAGTTTTGTGGTCAAGGATTTGCCAGC
CACAAGGTTAAGCGGGATGGCCGAAAAAACAAATACACATATAATAACAA
ATACTGCCACTCGAGCATGTTTGGGTACAACAACTTCAACCATCAGTAGC
AGAAGAGCCAGACTGGTCAAAATTAAGGAGATTATGATATAATGCTGGTC
TTTGATTTTGGACTTTCCTGAAAATTTATACATTAGGAAAAAGACAAACA
TTAGCCAAACACCACCAACCATATAAACACCACTTGTTTCGGTTTCTTTC
CAACCATAACCTTCTTGTGTAATCAAGGGCAAGAAAACTTCAAATTCAGT
TTGAATTAAAGACAAAATCAAATCAGAATAAAATATAGCAACAATTTCGA
TTGTGGTGATCAGCTCTAGAGCTTGTTGGAATGCGCTTTTCTTTTGAACA
AGTTTGATTGAATCGCCATAGTCAGTTGTTGTCATTTGCGATTCATCGTC
ATTGTAAAATTCTTCATCATCCTCAGTTACAATATTATCATCAATGAAGG
TTCGACCATTTGCTGCTTTATAACATTTGAAATGTTTACGATACTCCTTT
GGTACTAATGGTTTCTCGTCACCATAGGTCACATCTAGTACAGATTCACA
TAATGAAGTTTCTCTGACCCTCTTGAAATCAATTTCATACTCTGTGGGAG
GAACATTTCCTCTTCTATCTAACTGCATGTTAGGGTGATACTTTGCACGT
TCTTCAATTAATAATGAGAGGTTTGAGATGTAGAACACACTTATTAGTTG
AGCTAGTAACCATAAAATAGCCATGAATAAACCAGGTGCTGTTCCATTGT
CTATGGTCCATTTTCCCATAGTGAAATCAACCTTTACTAAAAAGAAGTTC
AGAGCTGGNaaaaattttctatttttaaacgATTCTATGAGTGCATGTCT
ATAGCTATAGGTTTCTGTCACAATTAAGTCAATAAAATCATttctaaaaa
tcataaaatctatAATCCTTAAGACTGCTTAAGACTAAATTATTATACTA
TAAAATTAACCTATCAGACCAGCCCTACAGTATAGTTGATAATAGAtcac
tatttaaaaaaaagaaagagaaaaatatatgTCTTTTCAATGAAGAAATA
TAGCTTATGTCGAAGTAGTGAAATTATTATCGGGGACAAAAGAACGGAGG
AATACTTCGAACTTTCCACAATTTTACCAATTGGTTGAGAACATTGTATA
AAGTGTATGTTATCAAGACCGTAAAAGTAAAgtataaaatttgtaaaaaa
tatgaaattattttgttgCATTGTATTATAAGTATAAATAGTGAATGTAA
GTattaaaaaaggtcaaaaagaaataaagttCAAACCATAGCTACAAAAG
CTGATCCAAGCATATGAAGAATATCCTGAACTATTTCCCTCTTTAGATTA
TGtgatttttttctaagaaaatagaCTGGATTAGACACTCTAAAATACAG
ATAAGTAACACTctataaaacaaagaaatagaAACACAAGTtagtgaaag
ttttaaaaaacgaagaaaaaaatctgaaaattagcCAGTCAAAAAGGGGA
AACTTTTATCTACTGAGAAATACTTTCAGCCGTCTCAACCttgtattttg
ataattttacgTCGGATTTTGCCTAACAACATAACCATCGCAATCAATCC
AACGATACAAAAACATAACATACTAGCTGAGAACTGCAAACGATGCTCAA
AAGCTGCTGCAGCTATGATGGGTCCTAGAATCAATGAAACACGACTGATT
GATGAATATACAGCTTGAGTGAATCCTTGAGTCTCTCTCGGTGTCAGTTT
TGTGGTCAAGGATTTGCCAGCCACAAGGTTAAGCGGGATGGCCGAAAAAA
CAAATACACATATAATAACAAATACTGCCACTCGAGCATGTTTGGGTACA
ACAACTTCAACCATCAGTAGCAGAAGAGCCAGACTGGTCAAAATTAAGGA
GATTATGATATAATGCTGGTCTTTGATTTTGGACTTTCCTGAAAATTTAT
ACATTAGGAAAAAGACAAACATTAGCCAAACACCACCAACCATATAAACA
CCACTTGTTTCGGTTTCTTTCCAACCATAACCTTCTTGTGTAATCAAGGG
CAAGAAAACTTCAAATTCAGTTTGAATTAAAGACAAAATCAAATCAGAAT
AAAATATAGCAACAATTTCGATTGTGGTGATCAGCTCTAGAGCTTGTTGG
AATGCGCTTTTCTTTTGAACAAGTTTGATTGAATCGCCATAGTCAGTTGT
TGTCATTTGCGATTCATCGTCATTGTAAAATTCTTCATCATCCTCAGTTA
CAATATTATCATCAATGAAGGTTCGACCATTTGCTGCTTTATAACATTTG
AAATGTTTACGATACTCCTTTGGTACTAATGGTTTCTCGTCACCATAGGT
CACATCTAGTACAGATTCACATAATGAAGTTTCTCTGACCCTCTTGAAAT
CAATTTCATACTCTGTGGGAGGAACATTTCCTCTTCTGTCTAACTGCATG
TTAGGGTGATACTTTGCACGTTCTTCAATTAATAATGAGAGGTTTGAGAT
GTAGAACACACTTATTAGTTGAGCTAGTAACCATAAAATAGCCATGAATA
AACCAGGTGCTGTTCCATTGTCTATGGTCCATTTTCCCATAGTGAAATCA
ACCTTTACTAAAAAGAAGTTCAGAGCTGGCCCAAAAGTAAGACCTAAAAC
TCTACCCAGTTCCAGCAGAGCCAGCGCCCCTGTGCGACTTGATAAAGGAT
ATGTATGAACAATTTCTGAAGTTGCACAAGCATAAAATCCATCGCCAAGT
CCAGCAAAGAAACGACCAGCAAAGATGAgccattttgaaaatggtaaggC
ATAGATGATATTACCTACTATTTCAAAGGTATTCAAAACGATGATTAATT
CTTTTGAGCGTTttgttttgtcaaaaattcgaCCAACAACAGGTAAAGAC
AACACAGCTGAAGTAGGGTATATTGCAACCACAATACCCAAAAACCATGT
TTTGACGTCAGGGTATCTCTTCAAATAAAGCCAAATTGAAGGTAATATGA
TCGCATATTCAGCTCCCAATAAGAACATACGAATGAAGAAACATATCAGT
GTTGCTTTTCGTTTCCGCAAAAAAACTGGATCTTTTTCCAGGCCTTCAAA
ACGGTCATCAAAGTTTATTGGGTTTTTATCtggcatttttttgcattttt
attcATTACACTATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017491-exon-sc0000269-1491911889:115662..116247 | TCONS_00017491-exon-sc0000269-1491911889:115662..116247 | Clytia hemisphaerica | exon |
| TCONS_00017491-exon-sc0000269-1510915933:115662..116247 | TCONS_00017491-exon-sc0000269-1510915933:115662..116247 | Clytia hemisphaerica | exon |
| TCONS_00017491-exon-sc0000269-1575043694:115662..116247 | TCONS_00017491-exon-sc0000269-1575043694:115662..116247 | Clytia hemisphaerica | exon |
| TCONS_00017491-exon-sc0000269-1491911889:117971..119327 | TCONS_00017491-exon-sc0000269-1491911889:117971..119327 | Clytia hemisphaerica | exon |
| TCONS_00017491-exon-sc0000269-1510915933:117971..119327 | TCONS_00017491-exon-sc0000269-1510915933:117971..119327 | Clytia hemisphaerica | exon |
| TCONS_00017491-exon-sc0000269-1575043694:117971..119327 | TCONS_00017491-exon-sc0000269-1575043694:117971..119327 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000269 | supercontig | sc0000269:115662..119327 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
|
