TCONS_00017481 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017481
Unique NameTCONS_00017481
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length253

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017481 ID=TCONS_00017481|Name=TCONS_00017481|organism=Clytia hemisphaerica|type=transcript|length=253bp
AGAATGTCAAGTTATCGATCAGTTCAGTTACAATTGTTCTTGTGAAGAAA
AGTACCATGGGGAATTCTGCCAATTTGAAAATGCGTGTTCTGAAAACCCA
TGTAAACAAAATGGAACGTGCCTGAAGGTTGAAAACACTTTCAAATGTAA
TTGTTCTTCAGGATATCATGGAGAGAACTGTGAAATGAAAGATAAATGCC
ATTTTGGTAACCCCTGTCAGAATAATGGAACGTGTCAGAGGAATGGTAAC
AAA
Run BLAST on NCBI

transcript from alignment at sc0000267:375374..375626

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017481 ID=TCONS_00017481|Name=TCONS_00017481|organism=Clytia hemisphaerica|type=transcript|length=253bp|location=Sequence derived from alignment at sc0000267:375374..375626 (Clytia hemisphaerica)
TTTGTTACCATTCCTCTGACACGTTCCATTATTCTGACAGGGGTTACCAA
AATGGCATTTATCTTTCATTTCACAGTTCTCTCCATGATATCCTGAAGAA
CAATTACATTTGAAAGTGTTTTCAACCTTCAGGCACGTTCCATTTTGTTT
ACATGGGTTTTCAGAACACGCATTTTCAAATTGGCAGAATTCCCCATGGT
ACTTTTCTTCACAAGAACAATTGTAACTGAACTGATCGATAACTTGACAT
TCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009781XLOC_009781Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017481-exon-sc0000267-1491911889:375374..375626TCONS_00017481-exon-sc0000267-1491911889:375374..375626Clytia hemisphaericaexon
TCONS_00017481-exon-sc0000267-1510915933:375374..375626TCONS_00017481-exon-sc0000267-1510915933:375374..375626Clytia hemisphaericaexon
TCONS_00017481-exon-sc0000267-1575043694:375374..375626TCONS_00017481-exon-sc0000267-1575043694:375374..375626Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000267supercontigsc0000267:375374..375626 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.731279	0.713113	0	1.62012	0.986171	1.55857	0.940175	0.880181	0.616235	0	0	1.46108	58.77	31.315	0.830489	2.67373	0	0	87.8424	98.9431	1.41408	0	0.838471	0.762291	0	2.10216	0	2.14028	0	0.826956
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017481 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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