TCONS_00017480 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017480
Unique NameTCONS_00017480
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length551

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017480 ID=TCONS_00017480|Name=TCONS_00017480|organism=Clytia hemisphaerica|type=transcript|length=551bp
CTCATTTGAAAATGATCAGTAACGCAGCACTGATCTATAAGACATTTATT
CAACGTAATATTAAACATGTATTTGGTTATACTGGAGGAGCTATATTTCC
ATTGTTGGATCAATTCTATCCACAAGATGAGAAGAACCGTAGAATCAAAC
TTGTAGTCAATTCACATGAACAATTTTGCGGATATGCTGCTATCGGATAT
GCCAAAGCATCCGGTAATACCGGCGTTGCTATGGTAACAAGTGGACCGGG
AATTACCAACTGTGTGACTTCTTTATTGGATGCTCAAGCAGATTCTACAC
CGTTCCTCTTAATCTCTGGTAATGTTTCTTTGGAAGCTTTCGGTAAAAAT
TCGTTCCAAGAATCACCAGCCGTTGATATCACCAAACCTATCACCAAGTG
GAGTCATATGGTGGAACCGCGAGATAACGTTGCAGACATCATTAACCAAG
CATTTGAGATTGCAAACCACAAGAAGAAAGGAGCTGTTCATATTGACATA
CCGGCTTGTATCCTAAACGCCAAAGTATCACACCACAAAACAACAATACC
C
Run BLAST on NCBI

protein sequence of TCONS_00017480-protein

>TCONS_00017480-protein ID=TCONS_00017480-protein|Name=TCONS_00017480-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
HLKMISNAALIYKTFIQRNIKHVFGYTGGAIFPLLDQFYPQDEKNRRIKL
VVNSHEQFCGYAAIGYAKASGNTGVAMVTSGPGITNCVTSLLDAQADSTP
FLLISGNVSLEAFGKNSFQESPAVDITKPITKWSHMVEPRDNVADIINQA
FEIANHKKKGAVHIDIPACILNAKVSHHKTTIP
Run BLAST on NCBI

transcript from alignment at sc0000267:268732..269282

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017480 ID=TCONS_00017480|Name=TCONS_00017480|organism=Clytia hemisphaerica|type=transcript|length=551bp|location=Sequence derived from alignment at sc0000267:268732..269282 (Clytia hemisphaerica)
GGGTATTGTTGTTTTGTGGTGTGATACTTTGGCGTTTAGGATACAAGCCG
GTATGTCAATATGAACAGCTCCTTTCTTCTTGTGGTTTGCAATCTCAAAT
GCTTGGTTAATGATGTCTGCAACGTTATCTCGCGGTTCCACCATATGACT
CCACTTGGTGATAGGTTTGGTGATATCAACGGCTGGTGATTCTTGGAACG
AATTTTTACCGAAAGCTTCCAAAGAAACATTACCAGAGATTAAGAGGAAC
GGTGTAGAATCTGCTTGAGCATCCAATAAAGAAGTCACACAGTTGGTAAT
TCCCGGTCCACTTGTTACCATAGCAACGCCGGTATTACCGGATGCTTTGG
CATATCCGATAGCAGCATATCCGCAAAATTGTTCATGTGAATTGACTACA
AGTTTGATTCTACGGTTCTTCTCATCTTGTGGATAGAATTGATCCAACAA
TGGAAATATAGCTCCTCCAGTATAACCAAATACATGTTTAATATTACGTT
GAATAAATGTCTTATAGATCAGTGCTGCGTTACTGATCATTTTCAAATGA
G

Coding sequence (CDS) from alignment at sc0000267:268732..269282

>TCONS_00017480 ID=TCONS_00017480|Name=TCONS_00017480|organism=Clytia hemisphaerica|type=CDS|length=549bp|location=Sequence derived from alignment at sc0000267:268732..269282 (Clytia hemisphaerica)
GGGTATTGTTGTTTTGTGGTGTGATACTTTGGCGTTTAGGATACAAGCCG
GTATGTCAATATGAACAGCTCCTTTCTTCTTGTGGTTTGCAATCTCAAAT
GCTTGGTTAATGATGTCTGCAACGTTATCTCGCGGTTCCACCATATGACT
CCACTTGGTGATAGGTTTGGTGATATCAACGGCTGGTGATTCTTGGAACG
AATTTTTACCGAAAGCTTCCAAAGAAACATTACCAGAGATTAAGAGGAAC
GGTGTAGAATCTGCTTGAGCATCCAATAAAGAAGTCACACAGTTGGTAAT
TCCCGGTCCACTTGTTACCATAGCAACGCCGGTATTACCGGATGCTTTGG
CATATCCGATAGCAGCATATCCGCAAAATTGTTCATGTGAATTGACTACA
AGTTTGATTCTACGGTTCTTCTCATCTTGTGGATAGAATTGATCCAACAA
TGGAAATATAGCTCCTCCAGTATAACCAAATACATGTTTAATATTACGTT
GAATAAATGTCTTATAGATCAGTGCTGCGTTACTGATCATTTTCAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009780XLOC_009780Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017480-exon-sc0000267-1491911889:268732..269282TCONS_00017480-exon-sc0000267-1491911889:268732..269282Clytia hemisphaericaexon
TCONS_00017480-exon-sc0000267-1510915933:268732..269282TCONS_00017480-exon-sc0000267-1510915933:268732..269282Clytia hemisphaericaexon
TCONS_00017480-exon-sc0000267-1575043694:268732..269282TCONS_00017480-exon-sc0000267-1575043694:268732..269282Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017480-proteinTCONS_00017480-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000267supercontigsc0000267:268732..269282 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.829889	0.606954	2.81893	2.18332	8.67342	6.30112	3.06749	2.49717	1.049	0.541397	0.105099	0.276351	0.482941	0.143297	0.0589048	0	0.856617	0.159637	0	0	1.20358	2.78854	0.118942	0	0	0.0994012	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012001Thiamin_PyroP_enz_TPP-bd_dom
IPR029061THDP-binding
Vocabulary: Molecular Function
TermDefinition
GO:0030976thiamine pyrophosphate binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0030976 thiamine pyrophosphate binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017480 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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