TCONS_00017478 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017478
Unique NameTCONS_00017478
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017478 ID=TCONS_00017478|Name=TCONS_00017478|organism=Clytia hemisphaerica|type=transcript|length=514bp
TTGCCAACATCTAACATGGACACATCCCCAACGTTTGATTACATCAGGAA
GCTGTGGTGCCATGGGTACTGGTCTTCCATATGCTATTGGTGCACAAATA
GCTTTTCCTGATCACATGGTTATCGATATTGATGGTGATGGTAGCTTTCT
AATGTCTATTGGAGATTTAAAAACAGTAGTTGAAGAACAGCTACCTGTTA
AAATTATTACAATGAATAATGGTTGCCTTGGAATGGTCAAGTcttctgta
aaatattttaaagatttcgAGGACACTGTTGCTATGAAATATCGAATTGC
ATCAGATTTTGCTCAGATTGCCAGAGCCTTTGGTGTCATCGGAATAACAT
GTACCAAGGACAATTTTCGAGAAAGCATCAATCAGTTTTTAAACTCAGAG
GGACCAGTACTGTTAGATTGTATCATTGAAAATACAGAATGTTTTCCGAA
TGTCCCTTACGGCAAGGGGTTAAATGAGATGTTTATTCAAAAAGACACTA
AACTCATATTCTAA
Run BLAST on NCBI

protein sequence of Acetolactate synthase probably from fungus contaminant

>TCONS_00017478-protein ID=TCONS_00017478-protein|Name=Acetolactate synthase probably from fungus contaminant|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
CQHLTWTHPQRLITSGSCGAMGTGLPYAIGAQIAFPDHMVIDIDGDGSFL
MSIGDLKTVVEEQLPVKIITMNNGCLGMVKSSVKYFKDFEDTVAMKYRIA
SDFAQIARAFGVIGITCTKDNFRESINQFLNSEGPVLLDCIIENTECFPN
VPYGKGLNEMFIQKDTKLIF
Run BLAST on NCBI

transcript from alignment at sc0000267:267547..268060

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017478 ID=TCONS_00017478|Name=TCONS_00017478|organism=Clytia hemisphaerica|type=transcript|length=514bp|location=Sequence derived from alignment at sc0000267:267547..268060 (Clytia hemisphaerica)
TTAGAATATGAGTTTAGTGTCTTTTTGAATAAACATCTCATTTAACCCCT
TGCCGTAAGGGACATTCGGAAAACATTCTGTATTTTCAATGATACAATCT
AACAGTACTGGTCCCTCTGAGTTTAAAAACTGATTGATGCTTTCTCGAAA
ATTGTCCTTGGTACATGTTATTCCGATGACACCAAAGGCTCTGGCAATCT
GAGCAAAATCTGATGCAATTCGATATTTCATAGCAACAGTGTCCTcgaaa
tctttaaaatattttacagaagACTTGACCATTCCAAGGCAACCATTATT
CATTGTAATAATTTTAACAGGTAGCTGTTCTTCAACTACTGTTTTTAAAT
CTCCAATAGACATTAGAAAGCTACCATCACCATCAATATCGATAACCATG
TGATCAGGAAAAGCTATTTGTGCACCAATAGCATATGGAAGACCAGTACC
CATGGCACCACAGCTTCCTGATGTAATCAAACGTTGGGGATGTGTCCATG
TTAGATGTTGGCAA

Coding sequence (CDS) from alignment at sc0000267:267547..268060

>TCONS_00017478 ID=TCONS_00017478|Name=TCONS_00017478|organism=Clytia hemisphaerica|type=CDS|length=513bp|location=Sequence derived from alignment at sc0000267:267547..268060 (Clytia hemisphaerica)
TTAGAATATGAGTTTAGTGTCTTTTTGAATAAACATCTCATTTAACCCCT
TGCCGTAAGGGACATTCGGAAAACATTCTGTATTTTCAATGATACAATCT
AACAGTACTGGTCCCTCTGAGTTTAAAAACTGATTGATGCTTTCTCGAAA
ATTGTCCTTGGTACATGTTATTCCGATGACACCAAAGGCTCTGGCAATCT
GAGCAAAATCTGATGCAATTCGATATTTCATAGCAACAGTGTCCTcgaaa
tctttaaaatattttacagaagACTTGACCATTCCAAGGCAACCATTATT
CATTGTAATAATTTTAACAGGTAGCTGTTCTTCAACTACTGTTTTTAAAT
CTCCAATAGACATTAGAAAGCTACCATCACCATCAATATCGATAACCATG
TGATCAGGAAAAGCTATTTGTGCACCAATAGCATATGGAAGACCAGTACC
CATGGCACCACAGCTTCCTGATGTAATCAAACGTTGGGGATGTGTCCATG
TTAGATGTTGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009778XLOC_009778Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017478-exon-sc0000267-1491911889:267547..268060TCONS_00017478-exon-sc0000267-1491911889:267547..268060Clytia hemisphaericaexon
TCONS_00017478-exon-sc0000267-1510915933:267547..268060TCONS_00017478-exon-sc0000267-1510915933:267547..268060Clytia hemisphaericaexon
TCONS_00017478-exon-sc0000267-1575043694:267547..268060TCONS_00017478-exon-sc0000267-1575043694:267547..268060Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Acetolactate synthase probably from fungus contaminantTCONS_00017478-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000267supercontigsc0000267:267547..268060 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.74481	0.453723	0.921928	2.83474	10.9805	5.702	4.0378	3.22012	1.17625	0.607074	0	0.154938	0.232083	0.0803403	0	0.212647	0.611249	0.179003	0	0	2.13684	2.30398	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011766TPP_enzyme-bd_C
IPR000399TPP-bd_CS
IPR029061THDP-binding
Vocabulary: Molecular Function
TermDefinition
GO:0030976thiamine pyrophosphate binding
GO:0003824catalytic activity
GO:0000287magnesium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0030976 thiamine pyrophosphate binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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