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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017470 ID=TCONS_00017470|Name=TCONS_00017470|organism=Clytia hemisphaerica|type=transcript|length=1338bp
TTTGGTTGCTAAGTTGAAAATTGAGCTTTTggagtgtttttttttgctga
aatttatttgttaaaaattgacgtcaaataaaattcGGATTAAAAAAAGT
AGATTTCAACCGTCAACAAAATAGCGCTGCATTTGAAAATTGGTAAATTA
ATACTGCGtgttttaacaaaagaaaaacattaaatCACTTGTAAAGAAGA
GTCACGCAAAACGAATGGACAGAAGACTTTTTGATTAGTATAGTAGcaga
aatatcatatttttatcACGAACTTCAACAACTTTATACAATAACTATGA
GTTTTTTATGTTGCTGTGGCTCGAACAATGTTAAAGCTATCAGACCGTTG
GCAATTTCATCCGATATTCATTTGGAAACATATGGACAattgaaaaaatc
gaaaacaaaCAACCGTAAACAGACTCCATCCAGGCCGAACAAAGGGCCGA
ATAAACAACAGAAAAGGACAGAGACGCGTCCAATAACATTGAAACAAGAC
ACAGCAAAAAGGAATGACCAAAATGGTAATAAAGTTCAAGTTCAAAAACA
GACAATTGCTATTCAAGCAGGATCACCTTTATGCAAAACGAGAAaccaaa
aaacgaaaacaactctctcttattcgaacgAAGACGACGATACAACCTCA
AAAAATCCTTTTCATAGATTAAGTAAAAAAACGGACCTGACACCACAACA
AAATTTGAAGGACACTCCAAAAGTTTTACGACCTTTGAAACAGATTGCGT
TAAATAAACGACTGACTTCCAATAAGAAGGGTGGTGATATTGTCTTAGAA
CCTATCGATGTTTCGATCCCAAAAAAGTTGGTACCAGTGAACAAAGATTT
CTTGAAGAGATTAGAGAAGAAGGTGGATGCATCACAAATACCAGAAACGC
AAGCCACCTCAAGTGCCCCTATAATGATTACTACAAAAATGATCgataaa
agtaaacaaaagaaggTTCAACCGATCTCAATTGCTAAATATCCTGATTC
GAGCGTTAAAACCTCATCAAGGACCCCTTCACCAAGTGAGCCTGAAGATC
CCGCAACTATGGCCCTTGCAATTAACGACGTCGAACAGCCACTGGCCTCA
TTGAGCCAGGGAActgaaatcaaacaaaagaGAGATAGCGATAATGATCT
TTACAATGATGATGAATTAGACCTAATGAGTCAAATAGAAAAAGAATTTG
CAAACTTACCATAAAGACTGTATATAACTGTAATcatatgtaaaatttta
attgtatattttatagaaatatttagaatttttttcaatgttaaacttaa
aattttataCAGTAGTAAGTATTTTTTTCCCACTGTTT Run BLAST on NCBI protein sequence of TCONS_00017470-protein >TCONS_00017470-protein ID=TCONS_00017470-protein|Name=TCONS_00017470-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
MSFLCCCGSNNVKAIRPLAISSDIHLETYGQLKKSKTNNRKQTPSRPNKG
PNKQQKRTETRPITLKQDTAKRNDQNGNKVQVQKQTIAIQAGSPLCKTRN
QKTKTTLSYSNEDDDTTSKNPFHRLSKKTDLTPQQNLKDTPKVLRPLKQI
ALNKRLTSNKKGGDIVLEPIDVSIPKKLVPVNKDFLKRLEKKVDASQIPE
TQATSSAPIMITTKMIDKSKQKKVQPISIAKYPDSSVKTSSRTPSPSEPE
DPATMALAINDVEQPLASLSQGTEIKQKRDSDNDLYNDDELDLMSQIEKE
FANLP Run BLAST on NCBI transcript from alignment at sc0000267:162020..163357 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017470 ID=TCONS_00017470|Name=TCONS_00017470|organism=Clytia hemisphaerica|type=transcript|length=1338bp|location=Sequence derived from alignment at sc0000267:162020..163357 (Clytia hemisphaerica)
AAACAGTGGGAAAAAAATACTTACTACTGtataaaattttaagtttaaca
ttgaaaaaaattctaaatatttctataaaatatacaattaaaattttaca
tatgATTACAGTTATATACAGTCTTTATGGTAAGTTTGCAAATTCTTTTT
CTATTTGACTCATTAGGTCTAATTCATCATCATTGTAAAGATCATTATCG
CTATCTCtcttttgtttgatttcagTTCCCTGGCTCAATGAGGCCAGTGG
CTGTTCGACGTCGTTAATTGCAAGGGCCATAGTTGCGGGATCTTCAGGCT
CACTTGGTGAAGGGGTCCTTGATGAGGTTTTAACGCTCGAATCAGGATAT
TTAGCAATTGAGATCGGTTGAAccttcttttgtttacttttatcGATCAT
TTTTGTAGTAATCATTATAGGGGCACTTGAGGTGGCTTGCGTTTCTGGTA
TTTGTGATGCATCCACCTTCTTCTCTAATCTCTTCAAGAAATCTTTGTTC
ACTGGTACCAACTTTTTTGGGATCGAAACATCGATAGGTTCTAAGACAAT
ATCACCACCCTTCTTATTGGAAGTCAGTCGTTTATTTAACGCAATCTGTT
TCAAAGGTCGTAAAACTTTTGGAGTGTCCTTCAAATTTTGTTGTGGTGTC
AGGTCCGTTTTTTTACTTAATCTATGAAAAGGATTTTTTGAGGTTGTATC
GTCGTCTTcgttcgaataagagagagttgttttcgttttttggtTTCTCG
TTTTGCATAAAGGTGATCCTGCTTGAATAGCAATTGTCTGTTTTTGAACT
TGAACTTTATTACCATTTTGGTCATTCCTTTTTGCTGTGTCTTGTTTCAA
TGTTATTGGACGCGTCTCTGTCCTTTTCTGTTGTTTATTCGGCCCTTTGT
TCGGCCTGGATGGAGTCTGTTTACGGTTGtttgttttcgattttttcaat
TGTCCATATGTTTCCAAATGAATATCGGATGAAATTGCCAACGGTCTGAT
AGCTTTAACATTGTTCGAGCCACAGCAACATAAAAAACTCATAGTTATTG
TATAAAGTTGTTGAAGTTCGTgataaaaatatgatatttctgCTACTATA
CTAATCAAAAAGTCTTCTGTCCATTCGTTTTGCGTGACTCTTCTTTACAA
GTGatttaatgtttttcttttgttaaaacaCGCAGTATTAATTTACCAAT
TTTCAAATGCAGCGCTATTTTGTTGACGGTTGAAATCTACTTTTTTTAAT
CCgaattttatttgacgtcaatttttaacaaataaatttcagcaaaaaaa
aacactccAAAAGCTCAATTTTCAACTTAGCAACCAAA Coding sequence (CDS) from alignment at sc0000267:162020..163357 >TCONS_00017470 ID=TCONS_00017470|Name=TCONS_00017470|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at sc0000267:162020..163357 (Clytia hemisphaerica)
TTATGGTAAGTTTGCAAATTCTTTTTCTATTTGACTCATTAGGTCTAATT
CATCATCATTGTAAAGATCATTATCGCTATCTCtcttttgtttgatttca
gTTCCCTGGCTCAATGAGGCCAGTGGCTGTTCGACGTCGTTAATTGCAAG
GGCCATAGTTGCGGGATCTTCAGGCTCACTTGGTGAAGGGGTCCTTGATG
AGGTTTTAACGCTCGAATCAGGATATTTAGCAATTGAGATCGGTTGAAcc
ttcttttgtttacttttatcGATCATTTTTGTAGTAATCATTATAGGGGC
ACTTGAGGTGGCTTGCGTTTCTGGTATTTGTGATGCATCCACCTTCTTCT
CTAATCTCTTCAAGAAATCTTTGTTCACTGGTACCAACTTTTTTGGGATC
GAAACATCGATAGGTTCTAAGACAATATCACCACCCTTCTTATTGGAAGT
CAGTCGTTTATTTAACGCAATCTGTTTCAAAGGTCGTAAAACTTTTGGAG
TGTCCTTCAAATTTTGTTGTGGTGTCAGGTCCGTTTTTTTACTTAATCTA
TGAAAAGGATTTTTTGAGGTTGTATCGTCGTCTTcgttcgaataagagag
agttgttttcgttttttggtTTCTCGTTTTGCATAAAGGTGATCCTGCTT
GAATAGCAATTGTCTGTTTTTGAACTTGAACTTTATTACCATTTTGGTCA
TTCCTTTTTGCTGTGTCTTGTTTCAATGTTATTGGACGCGTCTCTGTCCT
TTTCTGTTGTTTATTCGGCCCTTTGTTCGGCCTGGATGGAGTCTGTTTAC
GGTTGtttgttttcgattttttcaatTGTCCATATGTTTCCAAATGAATA
TCGGATGAAATTGCCAACGGTCTGATAGCTTTAACATTGTTCGAGCCACA
GCAACATAAAAAACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017470-exon-sc0000267-1491911889:162020..163357 | TCONS_00017470-exon-sc0000267-1491911889:162020..163357 | Clytia hemisphaerica | exon |
| TCONS_00017470-exon-sc0000267-1510915933:162020..163357 | TCONS_00017470-exon-sc0000267-1510915933:162020..163357 | Clytia hemisphaerica | exon |
| TCONS_00017470-exon-sc0000267-1575043694:162020..163357 | TCONS_00017470-exon-sc0000267-1575043694:162020..163357 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000267 | supercontig | sc0000267:162020..163357 . |
Blast
The following BLAST results are available for this feature:
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