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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017355 ID=TCONS_00017355|Name=TCONS_00017355|organism=Clytia hemisphaerica|type=transcript|length=1867bpRun BLAST on NCBI transcript from alignment at sc0000266:68717..83471+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017355 ID=TCONS_00017355|Name=TCONS_00017355|organism=Clytia hemisphaerica|type=transcript|length=14755bp|location=Sequence derived from alignment at sc0000266:68717..83471+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00017355 vs. Swiss-Prot (Human)
Match: ARGI1 (Arginase-1 OS=Homo sapiens GN=ARG1 PE=1 SV=2) HSP 1 Score: 183.341 bits (464), Expect = 8.143e-77 Identity = 90/156 (57.69%), Postives = 108/156 (69.23%), Query Frame = 1
Query: 778 KVQDMPGYEWAQPCLTPFDIAYIGLRDTDPGEYSITHELGILTFSMHEVDRYGIATVVERAIESINPRLDRPIHLSYDIDSLDPIHSPSTGTAVYGGLTLREGLYIGEHINKTGLLSALDIVEVNPYLGTSEEDAHKTVQTALRITEACLGKHRSG 1245
K+ D+PG+ W PC++ DI YIGLRD DPGE+ I LGI FSM EVDR GI V+E + + R RPIHLS+D+D LDP +P+TGT V GGLT REGLYI E I KTGLLS LDI+EVNP LG + E+ +TV TA+ IT AC G R G
Sbjct: 155 KIPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPSLGKTPEEVTRTVNTAVAITLACFGLAREG 310 HSP 2 Score: 124.02 bits (310), Expect = 8.143e-77 Identity = 62/149 (41.61%), Postives = 91/149 (61.07%), Query Frame = 3
Query: 333 VALITAPFSGGQPRAGVEHGPKALRNSGLVDCIEALGRKVHDHGDVSVEKNSCENPTLTNYRGHMLKNVEVCGKVSENIANEVEKAVKNEHIALTVGGDHSIATGTIMGHQRARGNICLLWIDAHNDINTYETSGSKNMHGMCLSHLVK 779
+ +I APFS GQPR GVE GP LR +GL++ ++ V D+GD+ ++P ++KN GK SE +A +V + KN I+L +GGDHS+A G+I GH R ++ ++W+DAH DINT T+ S N+HG +S L+K
Sbjct: 8 IGIIGAPFSKGQPRGGVEEGPTVLRKAGLLEKLKEQECDVKDYGDLPFADIPNDSPF------QIVKNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHARVHPDLGVIWVDAHTDINTPLTTTSGNLHGQPVSFLLK 150 The following BLAST results are available for this feature:
BLAST of TCONS_00017355 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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