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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017273 ID=TCONS_00017273|Name=TCONS_00017273|organism=Clytia hemisphaerica|type=transcript|length=2195bp
TCAGAATTCAGtaaagttttttagaaaaaaacaaaaatgatgtTGAAAAT
ATCGGTTGCTTTGTTCGCGCTGGTTTCTTTCGCAGCATGTGCATGGCCTG
GAGGTCAACGGGTAATCGATAGTAACGCACGTGGCTTTACAGTTATTCAC
GATGAAGCTGATAACTCCAATAACGAAACACTATATGCATTCTCGTACGA
AATTGCCAACAAACCAAGCTATTTCTACTCTCAAGGTTTTCTCAGTACAG
GCCATTCTAGCCCTAATTTAACGCTCAGTGGGTTAAGAATCAATGAAATC
ATATCCTTCAAAGTATGCAACTACCAACTTGGCACAACAATCACCAATGA
TTTGTTTTCATCGGCTACAGATATCAGTGTTAAACGTTCTGAACTGGCAG
GAAATACTTTGGTACCAGGAATTCCATTAAATCTTAAAGTCATTGCTGGT
AGCTCAAATAAATTTCACAGTGCAACTGTCACCTGGGATAACCCACAAAA
CATCCAAGACTCAACCAATGAAACAGATAAATCTATTCAATATAAATTCG
AAATATGCAGATATAACAGATTCACTGAAATGAAATCTAAATGTGAAATT
GAAGCTGACATTTTGAGAAACAAAGCTTCAACAACGCAATCGACCGAACA
AACAAAATCCAGCAAGCTGTATGATTTTAATTTCCACCCTTCAAAATCAG
ATGAGCTCGTCTACCGTATTACTGGCATTGCACTGAATGGTACTGCAGGT
CCAACAGCTGAAGCTATTGCCAGGCTGAACTCCACCTTGGCACCAAAAGC
TCCATATAATGTTACTGTTGCTTTGCATACTGAAATTTACGCTGATACGC
TCACGTTGTCATGGTTATCGGCCGATCAAGGTGTCAATTACGTCAGATAC
AACATTAAAGGCAACAGTACAACAATGATGAAATCAGGATCCTCACCGAT
GGTTATCAGTGGTTTGCGAAACAGTACAGAATATGAATTCCAAGTTGGCG
TTTATACTGAACGAAATGGTGGCAGTNaaaaatgaaaaatggtaacccaa
aggttccagatgttaaaattttcccgaccttcagagctttagcgtgtcgg
aagaaaatttctacatcgagtaccagatagcagtcgggctggaacggtat
cacgtgGGGAaatgagcgtaggagttaggtaagcgtaggatctaggaaga
aattttgtcggcggcaagggctgaaagcagcagcctctcaccaacttttg
cttgtTCTCCTACGTAGCTcttattctagcaaacgcccgccgcctttatg
ttcctgCCCACTTGAcatagtttgctagtctagcgCAAGACAAGCGCAAT
CACTCGATTACTACAACCTAGAAAgacaataaattttcaaattaagatAT
GCGGTCCAAATATATCAATGAAGATctaatgattttgttttttcaacCCA
TAGAACCGAGACCAACTCCAAAACCAGGAAACAATGGAACGATGCTGACA
TCATCACTTTTCTTATTACTTTCATCTCTATTTGCTGTCATCAAATTCTT
GTAAAGAGAATTGTAACAGAATACTCCCAGAATGCATTATAGTCACAAGA
ATCCAACTTTATTTACAACACACTTGAAATCTTTGGCAAACTCACATCAC
CGTCATTCANGGGGGGGGGAAAATAGGGTACGCGGGACATGCCGCtgatc
agggtcccttttttaggctctgaagatatctgacagggtccaaaatctac
taattttcaagatgtgcatctgacagggtccacttttggttatttggaca
atttttcagggaaaaaaatgagaaaatttttcagtttttcgtctactttt
agtcattttgccACTTGTTAGGGTGGAAAttgactttcaattttttgtcc
TGACAGTGTCCATGTTgtccgtcaaggtcagtgcccccctcCCGGGATGG
GTAGGAGCAAGGTTATATTATAGATATATGTATCGTATAGATAAGCTATT
TGTAATTTAAGAAAGAAACTTATACTTTAGATTTTATTACGAAAATATAC
ACttgatttagaaaaataattaaaatacgatTAGAAGGTTGAGTGTTACG
AAAATTTGAACTTTGAAGACTGGTTTCAGGCTGGCGAAATTTCCATCAGT
TTCTGCAGCTCCGGCTGCCATTTTGAGACAATTGACGGTTACCAG Run BLAST on NCBI transcript from alignment at sc0000264:82503..89382+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017273 ID=TCONS_00017273|Name=TCONS_00017273|organism=Clytia hemisphaerica|type=transcript|length=6880bp|location=Sequence derived from alignment at sc0000264:82503..89382+ (Clytia hemisphaerica)
TCAGAATTCAGtaaagttttttagaaaaaaacaaaaatgatgtTGAAAAT
ATCGGTTGCTTTGTTCGCGCTGGTTTCTTTCGCAGGTAAACATACGAGTA
AATTCTATCCACCTTTTTTTTGGGTAATTCTCTGCTTGATATTCTGCTAA
AACCCCGAGATAGTACTGGGGGCTTCAGAGAGTCTCGTATTGACCGGTAT
TTTGGTACAcgcttctttttataagaatggtgtaaatccatttcatcatg
gatattcttaacttttttgggaAAATCATCCTATAATATTCTTACAGCAT
TCTTAGGTTATGATCCTTATCCAGACACTAGATTTAACATTTAGTACATA
CGTCTCAAGCATAAAATGGCATTTTTGTGAAAGGGACGAGCCTTACTTGG
GGTAATTGACAATTTATAATCGAAAATGCTCTAAAGGCATTCTTAGCTTG
AGTAGCCAAATTCCATGACGGTGATATTCTTAGCATTAATCTTATGTTAT
TCTTATTCTTATCATTATTCTTAATGTTTTGGACATTTTTATCATGGACA
TTCTTGTAAAGCGTATTCTTATAAAAAAAGCGTGTACTTGAAGGACAGCT
GTATTGAAATATCGAAGCATTTTTGACCGATATTTGAGAAATCTTAAGCC
CACGCACCGGTATTTCGGTATTTAGTAACTTACGAAGCCCCCCCCTCTCA
CAACATGGTCATTGTTTACATCTAAGTTACTTTTGAACTTCAAAATATTA
TTAGCTAAAATTATTCTCTTCTACGTCATTTTTTTTCTTTCCTGGATATT
GGGATATCGTGAAAAGAAGAGAAGGCTGCTCAATTAAACAAACCATAGCT
TTGATAAAAACCATCTGCTGATAAATTGCTAATTCTCCAGCAAAGATTGT
TGATGTTTGCAAATTTCTAATGAGAAAGAAACTGATTTGATTATAAAAAC
AGCCCTGTATCATTGATCCGGTGAGAATATTTTTAACAATGGTAAAAACG
AAAGCACTTTAATACCAAATTGGCGATGGAAAATGTCTTGTGGGATTTTA
TACTGTCTGCAGCTAAAAATTCTAATACGTTAGAGAGCAGTGCTTATGGG
ATTTAGAGATAGGATAAAACTTCAGTATCGTTTTCCAATAGGGTTGAAAA
TTTCaagatattttattttcatcaggGACGAGTTTATAGCCGACTTTCCA
GAGCGAAATAGTTAAACAAAACACAAGTAAATCAATCGTTTAAAGTGGTA
ACCCGGGGGTACTTAGGTAAATGGATAGTACGGTATGTTCAGCCCTTAAG
GGTAcgttttttggatttccaaagtcccgctaagggtcggaaaaaaatca
gaaaatctaatttcagtcccactaagggtcggagaaataggaaaatttca
actttttacccccggaaagatcgaaatttggtcaaaattggtcaaatttg
tcccaataagggtcgtaaaaaattcacaaaagtttcctttgttttctcct
tttgatTACCAGTAAGGGCCCAAGAGTCGAAAGTTGGACGGCACCCTCCC
catcagctcgcaaccctagtatcccCCCCGGGAGTGATAAGCATCGCTTC
CACCCTAAATATCAGTTTTTTCGAATACACATTTATAATCTATCTTGatt
ttatgttttatgtttCAGCATGTGCATGGCCTGGAGGTCAACGGGTAATC
GATAGTAACGCACGTGGCTTTACAGTTATTCACGATGAAGCTGATAACTC
CAATAACGAAACACTATATGCATTCTCGTACGAAATTGCCAACAAACCAA
GCTATTTCTACTCTCAAGGTTTTCTCAGTACAGGCCATTCTAGCCCTAAT
TTAACGCTCAGTGGGTTAAGAATCAATGAAATCATATCCTTCAAAGTATG
CAACTACCAACTTGGCACAACAATCACCAATGATTTGTTTTCATCGGCTA
CAGATATCAGTGTTAAACGTTCTGAACTGGCAGGAAATACTTGTAAGTCA
TTTTTTGTCCGAATATGTCCGAAGTCAGTATCATACAGAGcgatcaaaaa
gaaaaacttttccaTGTATTTTGTATATTAAAAAGTACCCTAtcggggga
aaaaatgtcgggggaaagtgatgaaaattttgaggaggtgacgaaatttt
tttcccgattatttttatccccgaccaaaatatTTACCCGATTTGTTTTT
CCCAACCAAAAtgcaaatccaaattttttacgtCTCTATTAACCGAAatg
aaattagtgctttaaacgtcgaattacaagatctattttcgagctagtga
aggaaaccatttcatttggacaatttaatCGGGAGAAGtaactaaattgt
aaatttggtaggggaaaagtgacgaattttaaattttggtcgtggaaaag
tgacgaaaatgcctctagatGACGAAATGTTTCCCTAAATCCTACATGCC
ATATACGCCATATAATACGcttttctataagaaaattGTGCAAATCGTAT
ATAGAACTAAACCTGAGTAGGCAAAGGTTATTTTTCATGATGAATCAAAG
GTGTACTACAAAGTGTTCTCGACAGTATGGTCGAGGAGACATGGCTTCAT
CTAAAACTTTGGGACGTTAAATTCGAAAGATTTAAACTAATTACAATTGA
TTCCTAAGACCTTCACTCTATACAAAAGTACTCTATTCTCATAAATAGAG
GCTGGAGATCACAAATACTTGCAAACCTTTCCAGCTGACACTAAAGGTCA
AAACCTTCTTTTTCAGTGGTACCGGGAATTCCATTAAATCTTAAAGTCAT
TGCTGGTAGCTCAAATAAATTTCACAGTGCAACTGTCACCTGGGATAACC
CACAAAACATCCAAGACTCAACCAATGAAACAGATAAATCTATTCAATAT
AAATTCGAAATATGCAGATATAACAGATTCACtcaaatgaaatcaaaatg
tGAAATTGAAGCTGACATTTTGAGAAACAAAGCTTCAACAACGCAATCGA
CCGAACAAACAAAATCCAGCAAGCTGTATGATTTTAATTTCCACCCTTCA
AAATCAGATGAGCTCGTCTACCGTATTACTGGCATTGCACTGAATGGTAC
TGCAGGTCCAACAGCTGAAGCTATTGCCAGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTACGAAATTGCCAACAAACCAAGCT
ATTTCTACTCTCAAGGTTTTCTCAGTACAGGCCATTCTAGCCCTAATTTA
ACGCTCAGTGGGTTAAGAATCAATGAAATCATATCCTTCAAAGTATGCAA
CTACCAACTTGGCACAACAATCACCAATGATTTGTTTTCATCGGCTACAG
ATATCAGTGTTAAACGTTCTGAACTGGCAGGAAATACTTGTAAGTCATTT
TTTGTCCGAATATGTCCGAAGTCAGTATCATACAGAGcgatcaaaaagaa
aaacttttccaTGTATTTTGTATATTAAAAAGTACCCTAtcgggggaaaa
aatgtcgggggaaagtgatgaaaattttgaggaggtgacgaaattttttt
cccgattatttttatccccgaccaaaatatTTACCCGATTTGTTTTTCCC
AACCAAAAtgcaaatccaaattttttacgtCTCTATTAACCGAAatgaaa
ttagtgctttaaacgtcgaattacaagatctattttcgagctagtgaagg
aaaccatttcatttggacaatttaatCGGGAGAAGtaactaaattgtaaa
tttggtcggggaaaagtgacgaattttaaattttggtcgtggaaaagtga
cgaaaatgcctctaaatttcgtatttttcccTAAATCCCACATGCCATAT
ACGCCatataatacacttttttataagaaaattgtgCAAATCGTATATAG
AACTAAAACTAGAACTCCTGAGTAGGCAAAGGTTATTTTTCATGATGAAT
CAAAGGTGTACTACAAAGTGTTCTCGACAGTATGGTCGAGGAGACATGGC
TTCATCTAAAACTTTGAGACGTTAAATTCGAAAGATTTAAACTAATTATA
ATTGATTCCTAAGACCTTCACTCTATACAAAAGTACTCTATTCTCATAAA
TAGAGGCTGGAGATCATCAAATACTTTCAAACCTTTCCAGCTGGCACTAA
AGGTCAAACCCTTCTTTTTCAGTGGTACCAGGAATTCCATTAAATCTTAA
AGTCATTGCTGGTAGCTCAAATAAATTTCACAGTGCAACTGTCACCTGGG
ATAACCCACAAAACATCCAAGACTCAACCAATGAAACAGATAAATCTATT
CAATATAAATTCGAAATATGCAGATATAACAGATTCACTGAAATGAAATC
TAAATGTGAAATTGAAGCTGACATTTTGAGAAACAAAGCTTCAACAACGC
AATCGACCGAACAAACAAAATCCAGCAAGCTGTATGATTTTAATTTCCAC
CCTTCAAAATCAGATGAGCTCGTCTACCGTATTACTGGCATTGCACTGAA
TGGTACTGCAGGTCCAACAGCTGAAGCTATTGCCAGGCTGAACTCCACCT
TGGGTAAGTATGATCTTGATATTTTCAATAAgctatatttcaattttatt
gaattttattcgtgtttttttataagaacgaacgGAATATAAGCATATAA
TGTTTCGATGGCAAACCTACGGAACTTTTACTTTCAGGTAGGCATTTGCG
TTGTTTTATATGTTCGAACAAAAATATGTGCAATCAATTTCAAAACATAA
TCAAagtatttttaacaatttccaGCACCAAAAGCTCCATATAATGTTAC
TGTTGCTTTGCATACTGAAATTTACGCTGATACGCTCACGTTGTCATGGT
TATCGGCCGATCAAGGTGTCAATTACGTCAGATACAACATTAAAGGCAAC
AGTACAACAATGATGAAATCAGGATCCTCACCGATGGTTATCAGTGGTTT
GCGAAACAGTACAGAATATGAATTCCAAGTTGGCGTTTATACTGAACGAA
ATGGTGGCAGTNaaaaatgaaaaatggtaacccaaaggttccagatgtta
aaattttcccgaccttcagagctttagcgtgtcggaagaaaatttctaca
tcgagtaccagatagcagtcgggctggaacggtatcacgtgGGGAaatga
gcgtaggagttaggtaagcgtaggatctaggaagaaattttgtcggcggc
aagggctgaaagcagcagcctctcaccaacttttgcttgtTCTCCTACGT
AGCTcttattctagcaaacgcccgccgcctttatgttcctgCCCACTTGA
catagtttgctagtctagcgCAAGACAAGCGCAATCACTCGATTACTACA
ACCTAGAAAgacaataaattttcaaattaagatATGCGGTCCAAATATAT
CAATGAAGATctaatgattttgttttttcaacCCATAGAACCGAGACCAA
CTCCAAAACCAGGAAACAATGGAACGATGCTGACATCATCACTTTTCTTA
TTACTTTCATCTCTATTTGCTGTCATCAAATTCTTGTAAAGAGAATTGTA
ACAGAATACTCCCAGAATGCATTATAGTCACAAGAATCCAACTTTATTTA
CAACACACTTGAAATCTTTGGCAAACTCACATCACCGTCATTCANGGGGG
GGGGAAAATAGGGTACGCGGGACATGCCGCtgatcagggtccctttttta
ggctctgaagatatctgacagggtccaaaatctactaattttcaagatgt
gcatctgacagggtccacttttggttatttggacaatttttcagggaaaa
aaatgagaaaatttttcagtttttcgtctacttttagtcattttgccACT
TGTTAGGGTGGAAAttgactttcaattttttgtccTGACAGTGTCCATGT
TgtccgtcaaggtcagtgcccccctcCCGGGATGGGTAGGAGCAAGGTTA
TATTATAGATATATGTATCGTATAGATAAGCTATTTGTAATTTAAGAAAG
AAACTTATACTTTAGATTTTATTACGAAAATATACACttgatttagaaaa
ataattaaaatacgatTAGAAGGTTGAGTGTTACGAAAATTTGAACTTTG
AAGACTGGTTTCAGGCTGGCGAAATTTCCATCAGTTTCTGCAGCTCCGGC
TGCCATTTTGAGACAATTGACGGTTACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017273-exon-sc0000264-1491911889:82503..82587 | TCONS_00017273-exon-sc0000264-1491911889:82503..82587 | Clytia hemisphaerica | exon |
| TCONS_00017273-exon-sc0000264-1510915933:82503..82587 | TCONS_00017273-exon-sc0000264-1510915933:82503..82587 | Clytia hemisphaerica | exon |
| TCONS_00017273-exon-sc0000264-1575043694:82503..82587 | TCONS_00017273-exon-sc0000264-1575043694:82503..82587 | Clytia hemisphaerica | exon |
| TCONS_00017273-exon-sc0000264-1491911889:84171..84494 | TCONS_00017273-exon-sc0000264-1491911889:84171..84494 | Clytia hemisphaerica | exon |
| TCONS_00017273-exon-sc0000264-1510915933:84171..84494 | TCONS_00017273-exon-sc0000264-1510915933:84171..84494 | Clytia hemisphaerica | exon |
| TCONS_00017273-exon-sc0000264-1575043694:84171..84494 | TCONS_00017273-exon-sc0000264-1575043694:84171..84494 | Clytia hemisphaerica | exon |
| TCONS_00017273-exon-sc0000264-1491911889:87375..87755 | TCONS_00017273-exon-sc0000264-1491911889:87375..87755 | Clytia hemisphaerica | exon |
| TCONS_00017273-exon-sc0000264-1510915933:87375..87755 | TCONS_00017273-exon-sc0000264-1510915933:87375..87755 | Clytia hemisphaerica | exon |
| TCONS_00017273-exon-sc0000264-1575043694:87375..87755 | TCONS_00017273-exon-sc0000264-1575043694:87375..87755 | Clytia hemisphaerica | exon |
| TCONS_00017273-exon-sc0000264-1491911889:87978..89382 | TCONS_00017273-exon-sc0000264-1491911889:87978..89382 | Clytia hemisphaerica | exon |
| TCONS_00017273-exon-sc0000264-1510915933:87978..89382 | TCONS_00017273-exon-sc0000264-1510915933:87978..89382 | Clytia hemisphaerica | exon |
| TCONS_00017273-exon-sc0000264-1575043694:87978..89382 | TCONS_00017273-exon-sc0000264-1575043694:87978..89382 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000264 | supercontig | sc0000264:82503..89382 + |
Blast
The following BLAST results are available for this feature:
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