XLOC_009665 (gene) - C. hemisphaerica

Overview
NameXLOC_009665
Unique NameXLOC_009665
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000264:80432..89382+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_009665 ID=XLOC_009665|Name=XLOC_009665|organism=Clytia hemisphaerica|type=gene|length=8951bp|location=Sequence derived from alignment at sc0000264:80432..89382+ (Clytia hemisphaerica)
TTTCAGAATTCAGTAAAGTTTTTTAGAAAAAAACAAAAATGATGTTGAAA
ATATCGGTTGCTTTGTTCGCGCTGGTTTCTTTCGCAGGTAAACATACGAG
TAAATTCTATCCACCTTTTTTTTGGGTAATTCTCTGCTTGATATTCTGCT
AAAACCCCGAGATAGTACTGGGGGCTTCAGAGAGTCTCGTATTGACCGGT
ATTTTGGTACACGCTTCTTTTTATAAGAATGGTGTAAATCCATTTCATCA
TGGATATTCTTAACTTTTTTGGGAAAATCATCCTATAATATTCTTACAGC
ATTCTTAGGTTATGATCCTTATCCAGACACTAGATTTAACATTTAGTACA
TACGTCTCAAGCATAAAATGGCATTTTTGTGAAAGGGACGAGCCTTACTT
GGGGTAATTGACAATTTATAATCGAAAATGCTCTAaaggcattcttagct
tgagtagccaaattccatgacggtgatattcttagcattaatCTTATGTT
ATTCTTATTCTTATCATTATTCTTAATGTTTTGGACATttttatcatgga
cattcttgtaaagcgtattcttataaaaaaagcgtgtacttgaAGGACAG
CTGTATTGAAATATCGAAGCATTTTTGACCGATATTTGAGAAATCTTAAG
CCCACGCaccggtatttcggtatttagTAACTTACGAAGCCCCCCCCTCT
CACAACATGGTCATTGTTTACATCTAAGTTACTTTTGAACTTCAAAATAT
TATTAGCTAAAATTATTCTCTTCTacgtcattttttttctttcctggATA
TTGGGATATCGTGAAAAGAAGAGAAGGCTGCTCAATTAAACAAACCATAG
CTTTGATAAAAACCATCTGCTGATAAATTGCTAATTCTCCAGCAAAGATT
GTTGATGTTTGCAAATTTCTAATGAGAAAGAAACTGATTTGATTATAAAA
ACAGCCCTGTATCATTGATCCGGTGAGAATATTTTTAACAATGGTAAAAA
CGAAAGCACTTTAATACCAAATTGGCGATGGAAAATGTCTTGTGGGATTT
TATACTGTCTGCAGCTAAAAATTCTAATACGTTAGAGAGCAGTGCTTATG
GGATTTAGAGATAGGATAAAACTTCAGTATCGTTTTCCAATAGGGTTGAA
AATTTCAAGATATTTTATTCTCATCAGGGACGAGTTTATAGCCGACTTTC
CAGAGCGAAATAGTTAAACAAAACACAAGTAAATCAATCGTTTAAAGTGG
TAACCCGGGGGTACTTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTATTTCAGAATTCAGtaaagttttttagaaaaa
aacaaaaatgatgtTGAAAATATCGGTTGCTTTGTTCGCGCTGGTTTCTT
TCGCAGGTAAACATACGAGTAAATTCTATCCACCTTTTTTTTGGGTAATT
CTCTGCTTGATATTCTGCTAAAACCCCGAGATAGTACTGGGGGCTTCAGA
GAGTCTCGTATTGACCGGTATTTTGGTACAcgcttctttttataagaatg
gtgtaaatccatttcatcatggatattcttaacttttttgggaAAATCAT
CCTATAATATTCTTACAGCATTCTTAGGTTATGATCCTTATCCAGACACT
AGATTTAACATTTAGTACATACGTCTCAAGCATAAAATGGCATTTTTGTG
AAAGGGACGAGCCTTACTTGGGGTAATTGACAATTTATAATCGAAAATGC
TCTAAAGGCATTCTTAGCTTGAGTAGCCAAATTCCATGACGGTGATATTC
TTAGCATTAATCTTATGTTATTCTTATTCTTATCATTATTCTTAATGTTT
TGGACATTTTTATCATGGACATTCTTGTAAAGCGTATTCTTATAAAAAAA
GCGTGTACTTGAAGGACAGCTGTATTGAAATATCGAAGCATTTTTGACCG
ATATTTGAGAAATCTTAAGCCCACGCACCGGTATTTCGGTATTTAGTAAC
TTACGAAGCCCCCCCCTCTCACAACATGGTCATTGTTTACATCTAAGTTA
CTTTTGAACTTCAAAATATTATTAGCTAAAATTATTCTCTTCTACGTCAT
TTTTTTTCTTTCCTGGATATTGGGATATCGTGAAAAGAAGAGAAGGCTGC
TCAATTAAACAAACCATAGCTTTGATAAAAACCATCTGCTGATAAATTGC
TAATTCTCCAGCAAAGATTGTTGATGTTTGCAAATTTCTAATGAGAAAGA
AACTGATTTGATTATAAAAACAGCCCTGTATCATTGATCCGGTGAGAATA
TTTTTAACAATGGTAAAAACGAAAGCACTTTAATACCAAATTGGCGATGG
AAAATGTCTTGTGGGATTTTATACTGTCTGCAGCTAAAAATTCTAATACG
TTAGAGAGCAGTGCTTATGGGATTTAGAGATAGGATAAAACTTCAGTATC
GTTTTCCAATAGGGTTGAAAATTTCaagatattttattttcatcaggGAC
GAGTTTATAGCCGACTTTCCAGAGCGAAATAGTTAAACAAAACACAAGTA
AATCAATCGTTTAAAGTGGTAACCCGGGGGTACTTAGGTAAATGGATAGT
ACGGTATGTTCAGCCCTTAAGGGTAcgttttttggatttccaaagtcccg
ctaagggtcggaaaaaaatcagaaaatctaatttcagtcccactaagggt
cggagaaataggaaaatttcaactttttacccccggaaagatcgaaattt
ggtcaaaattggtcaaatttgtcccaataagggtcgtaaaaaattcacaa
aagtttcctttgttttctccttttgatTACCAGTAAGGGCCCAAGAGTCG
AAAGTTGGACGGCACCCTCCCcatcagctcgcaaccctagtatcccCCCC
GGGAGTGATAAGCATCGCTTCCACCCTAAATATCAGTTTTTTCGAATACA
CATTTATAATCTATCTTGattttatgttttatgtttCAGCATGTGCATGG
CCTGGAGGTCAACGGGTAATCGATAGTAACGCACGTGGCTTTACAGTTAT
TCACGATGAAGCTGATAACTCCAATAACGAAACACTATATGCATTCTCGT
ACGAAATTGCCAACAAACCAAGCTATTTCTACTCTCAAGGTTTTCTCAGT
ACAGGCCATTCTAGCCCTAATTTAACGCTCAGTGGGTTAAGAATCAATGA
AATCATATCCTTCAAAGTATGCAACTACCAACTTGGCACAACAATCACCA
ATGATTTGTTTTCATCGGCTACAGATATCAGTGTTAAACGTTCTGAACTG
GCAGGAAATACTTGTAAGTCATTTTTTGTCCGAATATGTCCGAAGTCAGT
ATCATACAGAGcgatcaaaaagaaaaacttttccaTGTATTTTGTATATT
AAAAAGTACCCTAtcgggggaaaaaatgtcgggggaaagtgatgaaaatt
ttgaggaggtgacgaaatttttttcccgattatttttatccccgaccaaa
atatTTACCCGATTTGTTTTTCCCAACCAAAAtgcaaatccaaatttttt
acgtCTCTATTAACCGAAatgaaattagtgctttaaacgtcgaattacaa
gatctattttcgagctagtgaaggaaaccatttcatttggacaatttaat
CGGGAGAAGtaactaaattgtaaatttggtaggggaaaagtgacgaattt
taaattttggtcgtggaaaagtgacgaaaatgcctctagatGACGAAATG
TTTCCCTAAATCCTACATGCCATATACGCCATATAATACGcttttctata
agaaaattGTGCAAATCGTATATAGAACTAAACCTGAGTAGGCAAAGGTT
ATTTTTCATGATGAATCAAAGGTGTACTACAAAGTGTTCTCGACAGTATG
GTCGAGGAGACATGGCTTCATCTAAAACTTTGGGACGTTAAATTCGAAAG
ATTTAAACTAATTACAATTGATTCCTAAGACCTTCACTCTATACAAAAGT
ACTCTATTCTCATAAATAGAGGCTGGAGATCACAAATACTTGCAAACCTT
TCCAGCTGACACTAAAGGTCAAAACCTTCTTTTTCAGTGGTACCGGGAAT
TCCATTAAATCTTAAAGTCATTGCTGGTAGCTCAAATAAATTTCACAGTG
CAACTGTCACCTGGGATAACCCACAAAACATCCAAGACTCAACCAATGAA
ACAGATAAATCTATTCAATATAAATTCGAAATATGCAGATATAACAGATT
CACtcaaatgaaatcaaaatgtGAAATTGAAGCTGACATTTTGAGAAACA
AAGCTTCAACAACGCAATCGACCGAACAAACAAAATCCAGCAAGCTGTAT
GATTTTAATTTCCACCCTTCAAAATCAGATGAGCTCGTCTACCGTATTAC
TGGCATTGCACTGAATGGTACTGCAGGTCCAACAGCTGAAGCTATTGCCA
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACG
AAATTGCCAACAAACCAAGCTATTTCTACTCTCAAGGTTTTCTCAGTACA
GGCCATTCTAGCCCTAATTTAACGCTCAGTGGGTTAAGAATCAATGAAAT
CATATCCTTCAAAGTATGCAACTACCAACTTGGCACAACAATCACCAATG
ATTTGTTTTCATCGGCTACAGATATCAGTGTTAAACGTTCTGAACTGGCA
GGAAATACTTGTAAGTCATTTTTTGTCCGAATATGTCCGAAGTCAGTATC
ATACAGAGcgatcaaaaagaaaaacttttccaTGTATTTTGTATATTAAA
AAGTACCCTAtcgggggaaaaaatgtcgggggaaagtgatgaaaattttg
aggaggtgacgaaatttttttcccgattatttttatccccgaccaaaata
tTTACCCGATTTGTTTTTCCCAACCAAAAtgcaaatccaaattttttacg
tCTCTATTAACCGAAatgaaattagtgctttaaacgtcgaattacaagat
ctattttcgagctagtgaaggaaaccatttcatttggacaatttaatCGG
GAGAAGtaactaaattgtaaatttggtcggggaaaagtgacgaattttaa
attttggtcgtggaaaagtgacgaaaatgcctctaaatttcgtatttttc
ccTAAATCCCACATGCCATATACGCCatataatacacttttttataagaa
aattgtgCAAATCGTATATAGAACTAAAACTAGAACTCCTGAGTAGGCAA
AGGTTATTTTTCATGATGAATCAAAGGTGTACTACAAAGTGTTCTCGACA
GTATGGTCGAGGAGACATGGCTTCATCTAAAACTTTGAGACGTTAAATTC
GAAAGATTTAAACTAATTATAATTGATTCCTAAGACCTTCACTCTATACA
AAAGTACTCTATTCTCATAAATAGAGGCTGGAGATCATCAAATACTTTCA
AACCTTTCCAGCTGGCACTAAAGGTCAAACCCTTCTTTTTCAGTGGTACC
AGGAATTCCATTAAATCTTAAAGTCATTGCTGGTAGCTCAAATAAATTTC
ACAGTGCAACTGTCACCTGGGATAACCCACAAAACATCCAAGACTCAACC
AATGAAACAGATAAATCTATTCAATATAAATTCGAAATATGCAGATATAA
CAGATTCACTGAAATGAAATCTAAATGTGAAATTGAAGCTGACATTTTGA
GAAACAAAGCTTCAACAACGCAATCGACCGAACAAACAAAATCCAGCAAG
CTGTATGATTTTAATTTCCACCCTTCAAAATCAGATGAGCTCGTCTACCG
TATTACTGGCATTGCACTGAATGGTACTGCAGGTCCAACAGCTGAAGCTA
TTGCCAGGCTGAACTCCACCTTGGGTAAGTATGATCTTGATATTTTCAAT
AAgctatatttcaattttattgaattttattcgtgtttttttataagaac
gaacgGAATATAAGCATATAATGTTTCGATGGCAAACCTACGGAACTTTT
ACTTTCAGGTAGGCATTTGCGTTGTTTTATATGTTCGAACAAAAATATGT
GCAATCAATTTCAAAACATAATCAAagtatttttaacaatttccaGCACC
AAAAGCTCCATATAATGTTACTGTTGCTTTGCATACTGAAATTTACGCTG
ATACGCTCACGTTGTCATGGTTATCGGCCGATCAAGGTGTCAATTACGTC
AGATACAACATTAAAGGCAACAGTACAACAATGATGAAATCAGGATCCTC
ACCGATGGTTATCAGTGGTTTGCGAAACAGTACAGAATATGAATTCCAAG
TTGGCGTTTATACTGAACGAAATGGTGGCAGTNaaaaatgaaaaatggta
acccaaaggttccagatgttaaaattttcccgaccttcagagctttagcg
tgtcggaagaaaatttctacatcgagtaccagatagcagtcgggctggaa
cggtatcacgtgGGGAaatgagcgtaggagttaggtaagcgtaggatcta
ggaagaaattttgtcggcggcaagggctgaaagcagcagcctctcaccaa
cttttgcttgtTCTCCTACGTAGCTcttattctagcaaacgcccgccgcc
tttatgttcctgCCCACTTGAcatagtttgctagtctagcgCAAGACAAG
CGCAATCACTCGATTACTACAACCTAGAAAgacaataaattttcaaatta
agatATGCGGTCCAAATATATCAATGAAGATctaatgattttgttttttc
aacCCATAGAACCGAGACCAACTCCAAAACCAGGAAACAATGGAACGATG
CTGACATCATCACTTTTCTTATTACTTTCATCTCTATTTGCTGTCATCAA
ATTCTTGTAAAGAGAATTGTAACAGAATACTCCCAGAATGCATTATAGTC
ACAAGAATCCAACTTTATTTACAACACACTTGAAATCTTTGGCAAACTCA
CATCACCGTCATTCANGGGGGGGGGAAAATAGGGTACGCGGGACATGCCG
Ctgatcagggtcccttttttaggctctgaagatatctgacagggtccaaa
atctactaattttcaagatgtgcatctgacagggtccacttttggttatt
tggacaatttttcagggaaaaaaatgagaaaatttttcagtttttcgtct
acttttagtcattttgccACTTGTTAGGGTGGAAAttgactttcaatttt
ttgtccTGACAGTGTCCATGTTgtccgtcaaggtcagtgcccccctcCCG
GGATGGGTAGGAGCAAGGTTATATTATAGATATATGTATCGTATAGATAA
GCTATTTGTAATTTAAGAAAGAAACTTATACTTTAGATTTTATTACGAAA
ATATACACttgatttagaaaaataattaaaatacgatTAGAAGGTTGAGT
GTTACGAAAATTTGAACTTTGAAGACTGGTTTCAGGCTGGCGAAATTTCC
ATCAGTTTCTGCAGCTCCGGCTGCCATTTTGAGACAATTGACGGTTACCA
G
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00017271TCONS_00017271Clytia hemisphaericatranscript
TCONS_00017272TCONS_00017272Clytia hemisphaericatranscript
TCONS_00017273TCONS_00017273Clytia hemisphaericatranscript
TCONS_00017274TCONS_00017274Clytia hemisphaericatranscript
TCONS_00017275TCONS_00017275Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00017274-proteinTCONS_00017274-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000264supercontigsc0000264:80432..89382 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.56	0.85	0.5	0.64	3.66	2.9	80.28	89.77	60.43	63.9	63.56	39.29	93.4	77.55	26.42	30.29	51.24	48.69	103.6	103.6	47.79	46.74	18.7	20.07	34.03	41.73	193.63	170.51	46.52	39.09