TCONS_00017219 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00017219
Unique Name	TCONS_00017219
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	810

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000261:86972..89719+

transcript sequence

>TCONS_00017219 ID=TCONS_00017219|Name=TCONS_00017219|organism=Clytia hemisphaerica|type=transcript|length=810bp
aagaaaaaacaaaaataaagaaccAAGCACAAAAACACATACAATGATca
ggaaaatgaaaacaattggAGGAAAGAAGTCttttaacaacaacaaaaac
aacaaaactcaAGAAGACAAAGGAGAGGGTACTTTTAGGAAGAATAAGTT
CACAGCCCGTGGTGGTGGTGCGGGCGGCCGTGGTGGTGGTGCGGGTGGCC
GTGGTGGCGGTGGCAAAGGGCGGAAATTTTTAAGCAAGAAGAAacaacaa
gaagaagaagatgaaggaaaatttgaagttgtcgaacaaaacaattcaca
aaagGAATCAATGAAGAACATCAAAGGCAGTGAAACCCAAGAAGACGATG
AAGGAGAAACGAATATACGAGAACTTGTCAAAACACAAAatagtaaacaa
aagaaatccgGTGGTTTCCAATCCATGGGTCTGTCGTACAACATTTTCAA
AGGAATCACAAGGAAAGGATATAAAGTCCCGACACCCATTCAACGGAAAA
CCATCCCCGTCATTATGGATGGCAAAGATGTGGTGGCCATGGCAAGGACA
GGTTCTGGCAAAACTGCAGCTTTTCTGATTCCTATGTTCGAAAAATTACA
AGCGCACTCAACTAATGGCCCAAGGGCGGTAATTTTGATTAATCTCACCT
TCTCATTTTAGGGCGCAAGGTCGGTAATTTTGTCACCTACAAGAGAGTTG
GCTGTACAAACATTGAAATTCGCGAAAGAGCTGGGCAAGTTTATGGATTT
GAAGATATCTTTAATCTTGGGTGGGGACAGCATGGAAAACCAATTCGCCG
CTTTCCATCA

Run BLAST on NCBI

transcript from alignment at sc0000261:86972..89719+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00017219 ID=TCONS_00017219|Name=TCONS_00017219|organism=Clytia hemisphaerica|type=transcript|length=2748bp|location=Sequence derived from alignment at sc0000261:86972..89719+ (Clytia hemisphaerica)
aagaaaaaacaaaaataaagaaccAAGCACAAAAACACATACAATGATca
ggaaaatgaaaacaattggAGGAAAGAAGTCttttaacaacaacaaaaac
aacaaaactcaAGAAGACAAAGGAGAGGGTACTTTTAGGAAGAATAAGTT
CACAGCCCGTGGTGGTGGTGCGGGCGGCCGTGGTGGTGGTGCGGGTGGCC
GTGGTGGCGGTGGCAAAGGGCGGAAATTTTTAAGCAAGAAGAAacaacaa
gaagaagaagatgaaggaaaatttgaagttgtcgaacaaaacaattcaca
aaaggtatttgcaaaattttaaatattatttttttgcgcATCAGCTAATT
ATTAGGGTGGTTACAGGTGGTTACGATGTTTGAATTCTTTCCATTATAGT
CCTCTCCGGAGTACTGCCCTTCCACGGCACATCACACCTCCCCTACAGTA
AGGAACCTCCCTTACATAAGTTCTACTGTACTTTGAATGGTTGTAACCTT
CATATTTTGCACTTTTACCACTTTTCCCGCCCGAACTGAACTATATTTGC
CATCTCAGTTTTTAGAAAGAGATATCACTTTTGACACTAAATCAAAGAAA
AGGCCATGATAAAGAAACTACCGCATGAGCTTATATAAATGGTAGCTACT
TCACCAATcagcaatgggcttttccagaaaaaaactgttGAGGAGCTCCA
ACCTTTGGTGAAccacccccttggaattccaggcaattttaggatcatac
ccctctggaattccgaatttttacagattttcaatcATATTACCCGCATG
GATTTGACGGATTTTTGTCTACtcctatggaattccactgcatttcaaac
cataCCCCCTTGGATTGGAAATggactcctcaacagggggtgcacggttt
ttttctggaaaagcccaatcaaGCATGTAGGTAGATCATCCAGCCAGGGT
ATgtgaggttgtgggttcgacccTCAGTCGGCTCATaacaaagattccca
aaatagtacttgatgcctctctaaTTCATGATCAGCAATTAAAGAGACGG
GTCGAGGGTAAacggagaaatccagggaagcTAGAGAAAAGGAAGACTTA
GGGTCGCCCTTGACTGCAGTCACAAACTTACTTTTTTCTCCATTAGGAAT
CAATGAAGAACATCAAAGGCAGTGAAACCCAAGAAGACGATGAAGGAGAA
ACGAATATACGAGAACTTGTCAAAACACAAAatagtaaacaaaagaaatc
cgGTGGTTTCCAATCCATGGGTTCGTATTTTCGTATACCTCTTTGAAATT
GTGCCGAGTTTGCAAGAAAACCATCCTCCAGAACTTTTTAAGAGTCGACC
TTCTTTTTGGAAAGTGCACTTTCTTTCCTAAAAGTGCAAGGAATTCAACC
GGCAGGTTGTGTCTACGATTCTACGGTTACTGTCACCCCGAGTTTACCTT
TACCTACTATTTTGGTGCTAAAAACGCGAAAGAACTTAGCCTTAGTAAGA
AACTCGACAGGGTTTTTGTAACCTGtgtaaatatttcaaactaAAATACT
GGTTCCCTTTTAGAGCGTTTAAAGTCGTTTACTACACTCTGTAATTCTCC
ccaattcgaagaaaattcaatAGTAAAAACAATATTTGAGTAACCTTTCT
AGATAACATAATTGACTTattattttcctttctttaGGTCTGTCGTACAA
CATTTTCAAAGGAATCACAAGGAAAGGATATAAAGTCCCGACACCCATTC
AACGGAAAACCATCCCCGTCATTATGGATGGCAAAGATGTGGTGGCCATG
GCAAGGACAGGTCAGTTGGATTGTGTGATTCCACTTGCTGATATCTTTCC
TCTCAAAAGACTATCTCTACTTTTTCCTTCTATGGATTAATCTTGTGTAT
AACTTTCTCCCTTCCCCCTAAGAATcataccaaaattcaaaaaggaTCGA
TGACTTTGACAAGAATCGTCGTAAAGTTTTAGACGTTACAATACTCTGCT
TACACAACCTTTTTAGAAATTAAGAAGAGATATAGTTAGTCTTGTAATAT
TTTAAGTTactctaaattaaaaaaaaatcctgctattttacattttctat
ttctttagGTTCTGGCAAAACTGCAGCTTTTCTGATTCCTATGTTCGAAA
AATTACAAGCGCACTCAACTAATGTgagtttcattttattttcaacccAG
AATAAAATGTTTCCTCTTACCTAACTATTCCTAACCATTTTACTGGTAGG
ATGTTGTGGAAAGAATGAGCCTTTCCTTGTCATATTTAACTTTCACCTTT
ATCTTTCAGGGCCCAAGGGCGGTAATTTTGATTAATCTCACCTTCTCATT
TTAGGGCGCAAGGTCGGTAATTTTGTCACCTACAAGAGAGTTGGCTGTAC
AAACATTGAAATTCGCGAAAGAGGTACTAGTGATACTTCTGCCCATTCTG
TTTTAGATTGACTTAATCCATTTTATACGTTGCCTATCACTTTTTAATTT
CGAACACAACTTGCCAAAATTTTACTGGCCGTCATTGTCTAGACTTAACT
GTTAAACGCTAAAACATCGGGTTATCActtttaaagtttgatttaTAAGA
ACCTATTTGAAATTGACTGTCTAAGTTTATTTCATTTGGAAACTATACTG
CTCTGATTTTCGTTTCAGCTGGGCAAGTTTATGGATTTGAAGATATCTTT
AATCTTGGGTGGGGACAGCATGGAAAACCAATTCGCCGCTTTCCATCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009636	XLOC_009636	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000261	supercontig	sc0000261:86972..89719 +

Expression

No biomaterial libraries express this feature.

Blast

[Close]

BLAST of TCONS_00017219 vs. Swiss-Prot (Human)
Match: DDX54 (ATP-dependent RNA helicase DDX54 OS=Homo sapiens GN=DDX54 PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 2.518e-64
Identity = 109/160 (68.12%), Postives = 124/160 (77.50%), Query Frame = 2

Query:  329 SETQEDDEGETNIRELVKTQNSKQKKSGGFQSMGLSYNIFKGITRKGYKVPTPIQRKTIPVIMDGKDVVAMARTGSGKTAAFLIPMFEKLQAHSTNGPRAVILINLTFSF*GARSVILSPTRELAVQTLKFAKELGKFMDLKISLILGGDSMENQFAAFH 808
            SE   D E +T  RE+V+ QN K+KKSGGFQSMGLSY +FKGI +KGYKVPTPIQRKTIPVI+DGKDVVAMARTGSGKTA FL+PMFE+L+ HS                 GAR++ILSPTRELA+QTLKF KELGKF  LK +LILGGD ME+QFAA H
Sbjct:   71 SECTSDVEPDT--REMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTHSAQT--------------GARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALH 214

The following BLAST results are available for this feature:

BLAST of TCONS_00017219 vs. Swiss-Prot (Human)

BLAST of TCONS_00017219 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DDX54	2.518e-64	68.13	ATP-dependent RNA helicase DDX54 OS=Homo sapiens G...	[more]

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TCONS_00017219 (transcript) - C. hemisphaerica