TCONS_00017208 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017208
Unique NameTCONS_00017208
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length783

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017208 ID=TCONS_00017208|Name=TCONS_00017208|organism=Clytia hemisphaerica|type=transcript|length=783bp
TGGTAACACTTTCAAAGCTTCAAATGTTCAGAAATCAATCACATTCATTG
AATGCCTCTTTGAAAACAGTATTCTTGATTTCGGATATCTTGTCCACCGT
GATACAGTTCATTTAAAATTGGTCGCGATTAGGTCGACTTTCATAAACTC
TGACATCAAAGTCGATTCTTTCTATGATGTAATATTGAAGTTTAATTATC
TGCTTCACTCGTCTGTACATATAACAGGTGTTGATGTTGATCGTCCCTCA
TTGAAACCCTCCAAATATCAAAGCAATATCGAGGATTGTTATTTTCACGG
ATCGAATAGCGGAAACTTTAGTCGTGACAACGTCCCGTTGATGTTACAAA
TCGAAAATAGTAATGTTTACATCATAAATTGCACGTTTGAGAGCGCAATA
TACGGTGCAGTACAAATCATAAGCTCATCCGTAATCATTCGAGATTCGAA
ATTTATGGGCAGTTCAGACGATGGTAGAAATGCACCAACTGAACGTTCCG
CAGCTTTAACAATGACAAGCAATAAAAAGATAACGTATATGCTATCAAAT
TGCATTTTTAGAAATAACTCGGCACTTCCTGGTCAAATTGGCTCAGTCAA
AGTCAAAATGACCGGTGGGGTTCTAATCTCTGGCTCGACATTCCGTATAG
AGAACACTTCCATTGTGGCTGGCGCTCACCCTATGTCAATGTTCGATACA
AGTGTTTTGTTTCAGACTGATGACTATAAAAGTGGCCTTTCATGGGTTTA
CTTTGATGAACATACTAAGCTGGTATGCCCACA
Run BLAST on NCBI

protein sequence of TCONS_00017208-protein

>TCONS_00017208-protein ID=TCONS_00017208-protein|Name=TCONS_00017208-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
GNTFKASNVQKSITFIECLFENSILDFGYLVHRDTVHLKLVAIRSTFINS
DIKVDSFYDVILKFNYLLHSSVHITGVDVDRPSLKPSKYQSNIEDCYFHG
SNSGNFSRDNVPLMLQIENSNVYIINCTFESAIYGAVQIISSSVIIRDSK
FMGSSDDGRNAPTERSAALTMTSNKKITYMLSNCIFRNNSALPGQIGSVK
VKMTGGVLISGSTFRIENTSIVAGAHPMSMFDTSVLFQTDDYKSGLSWVY
FDEHTKLVCP
Run BLAST on NCBI

transcript from alignment at sc0000260:285363..286145

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017208 ID=TCONS_00017208|Name=TCONS_00017208|organism=Clytia hemisphaerica|type=transcript|length=783bp|location=Sequence derived from alignment at sc0000260:285363..286145 (Clytia hemisphaerica)
TGTGGGCATACCAGCTTAGTATGTTCATCAAAGTAAACCCATGAAAGGCC
ACTTTTATAGTCATCAGTCTGAAACAAAACACTTGTATCGAACATTGACA
TAGGGTGAGCGCCAGCCACAATGGAAGTGTTCTCTATACGGAATGTCGAG
CCAGAGATTAGAACCCCACCGGTCATTTTGACTTTGACTGAGCCAATTTG
ACCAGGAAGTGCCGAGTTATTTCTAAAAATGCAATTTGATAGCATATACG
TTATCTTTTTATTGCTTGTCATTGTTAAAGCTGCGGAACGTTCAGTTGGT
GCATTTCTACCATCGTCTGAACTGCCCATAAATTTCGAATCTCGAATGAT
TACGGATGAGCTTATGATTTGTACTGCACCGTATATTGCGCTCTCAAACG
TGCAATTTATGATGTAAACATTACTATTTTCGATTTGTAACATCAACGGG
ACGTTGTCACGACTAAAGTTTCCGCTATTCGATCCGTGAAAATAACAATC
CTCGATATTGCTTTGATATTTGGAGGGTTTCAATGAGGGACGATCAACAT
CAACACCTGTTATATGTACAGACGAGTGAAGCAGATAATTAAACTTCAAT
ATTACATCATAGAAAGAATCGACTTTGATGTCAGAGTTTATGAAAGTCGA
CCTAATCGCGACCAATTTTAAATGAACTGTATCACGGTGGACAAGATATC
CGAAATCAAGAATACTGTTTTCAAAGAGGCATTCAATGAATGTGATTGAT
TTCTGAACATTTGAAGCTTTGAAAGTGTTACCA

Coding sequence (CDS) from alignment at sc0000260:285363..286145

>TCONS_00017208 ID=TCONS_00017208|Name=TCONS_00017208|organism=Clytia hemisphaerica|type=CDS|length=780bp|location=Sequence derived from alignment at sc0000260:285363..286145 (Clytia hemisphaerica)
TGGGCATACCAGCTTAGTATGTTCATCAAAGTAAACCCATGAAAGGCCAC
TTTTATAGTCATCAGTCTGAAACAAAACACTTGTATCGAACATTGACATA
GGGTGAGCGCCAGCCACAATGGAAGTGTTCTCTATACGGAATGTCGAGCC
AGAGATTAGAACCCCACCGGTCATTTTGACTTTGACTGAGCCAATTTGAC
CAGGAAGTGCCGAGTTATTTCTAAAAATGCAATTTGATAGCATATACGTT
ATCTTTTTATTGCTTGTCATTGTTAAAGCTGCGGAACGTTCAGTTGGTGC
ATTTCTACCATCGTCTGAACTGCCCATAAATTTCGAATCTCGAATGATTA
CGGATGAGCTTATGATTTGTACTGCACCGTATATTGCGCTCTCAAACGTG
CAATTTATGATGTAAACATTACTATTTTCGATTTGTAACATCAACGGGAC
GTTGTCACGACTAAAGTTTCCGCTATTCGATCCGTGAAAATAACAATCCT
CGATATTGCTTTGATATTTGGAGGGTTTCAATGAGGGACGATCAACATCA
ACACCTGTTATATGTACAGACGAGTGAAGCAGATAATTAAACTTCAATAT
TACATCATAGAAAGAATCGACTTTGATGTCAGAGTTTATGAAAGTCGACC
TAATCGCGACCAATTTTAAATGAACTGTATCACGGTGGACAAGATATCCG
AAATCAAGAATACTGTTTTCAAAGAGGCATTCAATGAATGTGATTGATTT
CTGAACATTTGAAGCTTTGAAAGTGTTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009628XLOC_009628Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017208-proteinTCONS_00017208-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017208-exon-sc0000260-1491911889:285363..286145TCONS_00017208-exon-sc0000260-1491911889:285363..286145Clytia hemisphaericaexon
TCONS_00017208-exon-sc0000260-1510915933:285363..286145TCONS_00017208-exon-sc0000260-1510915933:285363..286145Clytia hemisphaericaexon
TCONS_00017208-exon-sc0000260-1575043694:285363..286145TCONS_00017208-exon-sc0000260-1575043694:285363..286145Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000260supercontigsc0000260:285363..286145 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.247232	0.120545	0.34991	0.136933	0.666811	0.592789	1.11249	0.595145	0.36459	0.193545	0.125239	0	1.31541	0.426895	1.86012	1.99619	0.231995	0.237787	0.854141	1.30632	0.0597594	0.174891	0.496074	0.386574	0.995406	1.30295	0.423755	0	0.137204	0.139789
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017208 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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