TCONS_00017200 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017200
Unique NameTCONS_00017200
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017200 ID=TCONS_00017200|Name=TCONS_00017200|organism=Clytia hemisphaerica|type=transcript|length=329bp
GTGGTACCAATAACACAATGGATAATTCACAGAACGAAATTTTCATCCGA
ATTCGTACCGTAGTGGACATTCTCATCTTATTCTTTTCACTGTTCGGTAA
TATACTAATCATCCTCAGTAtatggaaaatgaagaaattgcGGAAAGTAT
TCACAAGCATTTTAATCGTTAACTTAGCCATATGTGACATCCTGTTAGTC
CTTTTTGGTGTTTTACCAGATTTGCTGACTTTGTACCGTGGTGACTTATT
TTCGTCGCATATTATCAGTTGTAAGCTGTTAATGCCGTTATCAACTTTTC
AGGTCAATGCAATTTCTCTCATCATGGTA
Run BLAST on NCBI

protein sequence of TCONS_00017200-protein

>TCONS_00017200-protein ID=TCONS_00017200-protein|Name=TCONS_00017200-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
GTNNTMDNSQNEIFIRIRTVVDILILFFSLFGNILIILSIWKMKKLRKVF
TSILIVNLAICDILLVLFGVLPDLLTLYRGDLFSSHIISCKLLMPLSTFQ
VNAISLIMV
Run BLAST on NCBI

transcript from alignment at sc0000260:137623..137951

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017200 ID=TCONS_00017200|Name=TCONS_00017200|organism=Clytia hemisphaerica|type=transcript|length=329bp|location=Sequence derived from alignment at sc0000260:137623..137951 (Clytia hemisphaerica)
TACCATGATGAGAGAAATTGCATTGACCTGAAAAGTTGATAACGGCATTA
ACAGCTTACAACTGATAATATGCGACGAAAATAAGTCACCACGGTACAAA
GTCAGCAAATCTGGTAAAACACCAAAAAGGACTAACAGGATGTCACATAT
GGCTAAGTTAACGATTAAAATGCTTGTGAATACTTTCCgcaatttcttca
ttttccataTACTGAGGATGATTAGTATATTACCGAACAGTGAAAAGAAT
AAGATGAGAATGTCCACTACGGTACGAATTCGGATGAAAATTTCGTTCTG
TGAATTATCCATTGTGTTATTGGTACCAC

Coding sequence (CDS) from alignment at sc0000260:137623..137951

>TCONS_00017200 ID=TCONS_00017200|Name=TCONS_00017200|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at sc0000260:137623..137951 (Clytia hemisphaerica)
TACCATGATGAGAGAAATTGCATTGACCTGAAAAGTTGATAACGGCATTA
ACAGCTTACAACTGATAATATGCGACGAAAATAAGTCACCACGGTACAAA
GTCAGCAAATCTGGTAAAACACCAAAAAGGACTAACAGGATGTCACATAT
GGCTAAGTTAACGATTAAAATGCTTGTGAATACTTTCCgcaatttcttca
ttttccataTACTGAGGATGATTAGTATATTACCGAACAGTGAAAAGAAT
AAGATGAGAATGTCCACTACGGTACGAATTCGGATGAAAATTTCGTTCTG
TGAATTATCCATTGTGTTATTGGTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009620XLOC_009620Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017200-exon-sc0000260-1491911889:137623..137951TCONS_00017200-exon-sc0000260-1491911889:137623..137951Clytia hemisphaericaexon
TCONS_00017200-exon-sc0000260-1510915933:137623..137951TCONS_00017200-exon-sc0000260-1510915933:137623..137951Clytia hemisphaericaexon
TCONS_00017200-exon-sc0000260-1575043694:137623..137951TCONS_00017200-exon-sc0000260-1575043694:137623..137951Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017200-proteinTCONS_00017200-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000260supercontigsc0000260:137623..137951 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.315045	0.760177	1.0675	0	0	0	0	0.983095	0.816763	0.167873	0	0	0.227475	1.88561	0	0.285839	0	0.338972	0	0	0.566566	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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