TCONS_00017193 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017193
Unique NameTCONS_00017193
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1094

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017193 ID=TCONS_00017193|Name=TCONS_00017193|organism=Clytia hemisphaerica|type=transcript|length=1094bp
ttttcaatttgtagagggtctgtaaaactgATTTCAAATTAATCTTGTCT
CAAAAGGAAATAAAGGAATAATGGCAGATGCTGCTGCAGAAGCTGCTGTA
GAGAAAACTAATTTTGATAATATCAGTACCTCTTCTGGTTCAGAAAATCT
AGATTCTTCATTCAGTGATGTTAGCACACCAGTGGCGGTCAGAAAAGTGG
AACCACAAACTTTAGAAGAATCTTGTGATAACATGGTTGATAAAATTACA
GATTATCTCAACGGTGAATTAGCAGCTACCTCTGCTGATTACAAATTGCT
GGAAAACTTAAACAAGATGGCTACAGAAAAATATACGGACATGTCCAAGA
CTACAAACAACCTGATAACTAATATGGACGATATCAATGAAAGATACAAG
GCATTGGCACCTTATTTACAACAAATTGACCTGTTAGAAGAAAGTGTTCT
CAAGTTGGAACAAACTGCATACAAGTTAGACAGCTACTCTAAACAATTAG
AAACGAAGTTCAAGACCATGGAAAGGAGGTGATTGTCTCTGTAGTAATAA
TGTTGTTTGGTTTGCTCTCTTTAGCTGGGGCTTCAATAGCTTAATCCATG
TTCAGCAAAGCCAGACATCAATGAAGCGTTTTTCTTCACATACAAAAGTT
TCCTGTTAGTAATACAAAAAGGGGTCACAGAATCACAAGTCTTTTGAACG
AAGGAGAGTCTCCGTCTCGCAAAgtttatttaattttgaattaaattcTA
AACTGAAACTTTCCAAAGAGTCTTTTCTTAAATTGTCTGTAATTTTTGAC
TTATTTCAACTCAGACATACCCATATCTCACAAGCTTACTTTCTGTATTA
GGCTTCAAAGGGTGTGAAATTCCTATTGTTATTGTTCTAGAAAAACTGAT
TTTGTAAATatatttcaagtaaattaattAATGCAGGTCAtgtaatttat
aaaatttttgaaatattgaaaatattgcattttaaaTTTGTTCAATCTTT
AAAGATCATCAACAATAATCTTATGATTTTTCTTATATCCATTGGAGATC
AAAAATCTCTGCGATAGcttttttttccaattcttttgtATGGT
Run BLAST on NCBI

transcript from alignment at sc0000260:292888..297591-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017193 ID=TCONS_00017193|Name=TCONS_00017193|organism=Clytia hemisphaerica|type=transcript|length=4704bp|location=Sequence derived from alignment at sc0000260:292888..297591- (Clytia hemisphaerica)
TTTTCAATTTGTAGAGGGTCTGTAAAACTGATTTCAAATTAATCTTGTCT
CAAAAGGAAATAAAGGAATAATGGCAGATGCTGCTGCAGAAGCTGCTGTA
GAGAAAACTAATTTTGATAATATCAGTACCTCTTCTGGTTCAGAAAATCT
AGATTCTTCATTCAGTGATGTTAGCAGTAAGTATTTTTTGGTGTTTTTGT
TTAATAACATCATTTTACCATAATCATGTAAAACTCGTCAGAAAAATCAG
GAATACTTTCTTTAAACACATGCAAATTATTCACTCGACAATTTCACCAC
AGCACACTAATATTTATGATTAATAAAAAATATTCAAATCAGATTTATTT
GTGAAAATAATTATAATTATATTTTTCACCTTTAAAATAGCACCAGTGGC
GGTCAGAAAAGTGGAACCACAAACTTTAGAAGAATCTTGTGATAACATGG
TTGATAAAATTACAGATTATCTCAACGGTGAATTAGCAGGTAAAATTTGG
GATGATCCACGTGAAAACTCATCTACAAATTATAATTGTACTCTATAATA
ACCAGTAAATGTTTGTTGAGGCTCAGCTTTTTGGCACTTGAGTCTCAAAT
AGTTCTACCCTTTTCTTATATTGAAGGTTTTATTTTTAAATAAGAGTGAT
ATTGTTTACTCGCTCATCAATTTTAACAAAAAAAACTTTAAATTCTTTAC
CAAAAAATGGTAAAGAATTGCAAGAAATAATTTCTTTTTCAAGAATTCAT
ACGTCTTTGTTACACTTGTAAATTTCTTAATCAAAAAGACTTGATTAAAA
ATTTCAGAAATTTTGAAATCTAGTAGTGCTAAGGACAAAGAAATTCATAC
AGATGTTCTCCATTATGACACAATCTCCCAGGAAGGAAAAAAAAATTGCT
GACTTCATCCAAAAAGCTATGACGTCATTACAAAGGTGTAGTTTATATGG
CCGTTTTTTTGCCGTGTCAAAAAAGACAAAAAAGTGGGTCGTTTAAACCA
GTGCCGATCTTTTGCCGCACTTTTTAATTAAGTTCGGCAAAATTTGCCTT
GTTCAATTGTTAAGGTCGACCTCAAATCAAAATTTGATTTATATAGAAGC
TCTTTTGCTGCACTCAATTCGACTTCGTTTTTTTTATGAAGTTATTTGAA
TTAGACACGACAGAAAACCGGCCATATAAATTTCCACCTGTCGGAAAAAA
GCCCAAAATATATGGTTTATAAAAATGTCTCTCACAGTCGAATTAGTAAA
ACAAACTAGATTCTGTTTAAAGATTTTTAAAGTTTTTATGGTAAATAGAA
GTGGCATAAAACAATGATAATTCAAAAGTAGTTGGTAACGTTACCAAACA
AAAACAGTATTTTTGTGATAAGTTATTTTTAATTGTTCTTGTGGAGATAA
TTTTCATCGAAAAAGTCTGATGTTTTTTGTTCTATCAAATTTACTATATA
ATACTTATATTTTTGGATTTAGCTACCTCTGCTGATTACAAATTGCTGGA
AAACTTAAACAAGATGGCTACAGAAAAATATACGGACATGTCCAAGACTA
CAAACAACCTGATAACTAATATGGACGATATCAATGAAAGATGTATGTTT
TGTTTTCTTACTTCATAATCTGTCTGAATGCTTCTTTTTGGACCTACCTA
AGGTAGTCCTTTAAATTAACCCTTGTCCGTTCGTTCGTTCGTTCGTTCGT
TCGTCCGTTCGTTCGTCTGTTGCCAGCTTTTCTCAGGATTGGCTCATTAG
TTTTTTCTGATTTTTGGCACAANNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGATTGTTT
TTCTCCTTATTGCTATCTAAGTTTCATCATCAGGTAGGTCCATTCAGCAT
ATTGCTTGTTAAAGTTCCTTTCAATTTAATTCTCAGTTAAATTGCAAATG
CGAATAGATGTTTTTCTTTAAATATAAGTGTAACGTTTATATGCATTCTA
AGACCTGGGATTTGGTGAAAAATATGCACACTAAGCACCAGTGAGCTTAT
GGATTTTGAAAAGATCTTCTGTCAAGTATTTACACTAAAAAACCAATAGC
ATAATTCCAATTTGAACCTAATGAAACTCTTAAAATAATTCTTGTCAAGA
ATCTACCGAAAAGACCAATCTCCGGAAGAATAAGAATAACTGTAGCATAA
TTTGAGCTTGATTCCAAAATACAGCTAAACATAACTGAGCCTGTCTTTCA
AAAAAGATATGCTTATTAAAAAAATGTAACTTTCGATAGAGTTTGAATTG
AATTGCAATTTTTTGCCTGTTTAAGTGGAGGTTGGGTTCGAGTCTACCAC
GATTGAATGGAAGCCAATTGGAAAGTATTTGCACCCTGATTGGATTAGAT
TATAAAAAACTGATTTATCATTATGGAAAATAACTTGGCTTTGATTTTTA
TTATTTTACAGACAAGGCATTGGCACCTTATTTACAACAAATTGACCTGT
TAGAAGAAAGTGTTCTCAAGTTGGAACAAACTGCATACAAGTTAGACAGC
TACTCTAAACAATTAGGTATATTTGTTGTTAATATTATTCTTGACTTAAG
GTCCATCAGGTCCAAAATACACAAAATCTTGTTGTTCAGATTTGGAACTA
TAAATACGTTGTTATATAGTTCGAGTTTCGATCTAAATAAGAACTTCAGA
ACAAAGCTCTGTGGTGCTATTATACCTATCATTCTCAATATTTCTTTTCA
CCAAAACAGATCCCTATAATATTCTGTGTCTCAAAGCTCTTGTGGGCATG
GAGGTTGAAGTAAACTTAAATGAAGATGAAATTTATAAATTCTTTTTACC
TATTTTCTAGAAACGAAGTTCAAGACCATGGAAAGGAGGTGATTGTCTCT
GTAGTAATAATGTTGTTTGGTTTGCTCTCTTTAGCTGGGGCTTCAATAGC
TTAATCCATGTTCAGCAAAGCCAGACATCAATGAAGCGTTTTTCTTCACA
TACAAAAGTTTCCTGTTAGTAATACAAAAAGGGGTCACAGAATCACAAGT
CTTTTGAACGAAGGAGAGTCTCCGTCTCGCAAAGTTTATTTAATTTTGAA
TTAAATTCTAAACTGAAACTTTCCAAAGAGTCTTTTCTTAAATTGTCTGT
AATTTTTGACTTATTTCAACTCAGACATACCCATATCTCACAAGCTTACT
TTCTGTATTAGGCTTCAAAGGGTGTGAAATTCCTATTGTTATTGTTCTAG
AAAAACTGATTTTGTAAATATATTTCAAGTAAATTAATTAATGCAGGTCA
TGTAATTTATAAAATTTTTGAAATATTGAAAATATTGCATTTTAAATTTG
TTCAATCTTTAAAGATCATCAACAATAATCTTATGATTTTTCTTATATCC
ATTGGAGATCAAAAATCTCTGCGATAGCTTTTTTTTCCAATTCTTTTGTA
TGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009613XLOC_009613Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017193-exon-sc0000260-1575043694:297416..297591TCONS_00017193-exon-sc0000260-1575043694:297416..297591Clytia hemisphaericaexon
TCONS_00017193-exon-sc0000260-1575043694:297103..297201TCONS_00017193-exon-sc0000260-1575043694:297103..297201Clytia hemisphaericaexon
TCONS_00017193-exon-sc0000260-1575043694:296000..296119TCONS_00017193-exon-sc0000260-1575043694:296000..296119Clytia hemisphaericaexon
TCONS_00017193-exon-sc0000260-1575043694:293776..293880TCONS_00017193-exon-sc0000260-1575043694:293776..293880Clytia hemisphaericaexon
TCONS_00017193-exon-sc0000260-1575043694:292888..293481TCONS_00017193-exon-sc0000260-1575043694:292888..293481Clytia hemisphaericaexon
TCONS_00017193-exon-sc0000260-1510915933:297416..297591TCONS_00017193-exon-sc0000260-1510915933:297416..297591Clytia hemisphaericaexon
TCONS_00017193-exon-sc0000260-1510915933:297103..297201TCONS_00017193-exon-sc0000260-1510915933:297103..297201Clytia hemisphaericaexon
TCONS_00017193-exon-sc0000260-1510915933:296000..296119TCONS_00017193-exon-sc0000260-1510915933:296000..296119Clytia hemisphaericaexon
TCONS_00017193-exon-sc0000260-1510915933:293776..293880TCONS_00017193-exon-sc0000260-1510915933:293776..293880Clytia hemisphaericaexon
TCONS_00017193-exon-sc0000260-1510915933:292888..293481TCONS_00017193-exon-sc0000260-1510915933:292888..293481Clytia hemisphaericaexon
TCONS_00017193-exon-sc0000260-1491911889:297416..297591TCONS_00017193-exon-sc0000260-1491911889:297416..297591Clytia hemisphaericaexon
TCONS_00017193-exon-sc0000260-1491911889:297103..297201TCONS_00017193-exon-sc0000260-1491911889:297103..297201Clytia hemisphaericaexon
TCONS_00017193-exon-sc0000260-1491911889:296000..296119TCONS_00017193-exon-sc0000260-1491911889:296000..296119Clytia hemisphaericaexon
TCONS_00017193-exon-sc0000260-1491911889:293776..293880TCONS_00017193-exon-sc0000260-1491911889:293776..293880Clytia hemisphaericaexon
TCONS_00017193-exon-sc0000260-1491911889:292888..293481TCONS_00017193-exon-sc0000260-1491911889:292888..293481Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000260supercontigsc0000260:292888..297591 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.3261	9.13043	5.20703	3.97361	8.72771	5.54312	15.5105	13.1845	15.1078	18.0231	12.7648	13.0637	12.0379	10.4992	9.2588	11.5718	12.6286	13.4568	4.50794	5.72214	9.39879	8.76643	15.8921	15.7829	16.9152	17.8219	8.8738	4.26345	15.1396	13.1021
Blast
[Close]
BLAST of TCONS_00017193 vs. Swiss-Prot (Human)
Match: BL1S2 (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Homo sapiens GN=BLOC1S2 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.577e-31
Identity = 55/104 (52.88%), Postives = 74/104 (71.15%), Query Frame = 2 
Query:  218 ESCDNMVDKITDYLNGELAATSADYKLLENLNKMATEKYTDMSKTTNNLITNMDDINERYKALAPYLQQIDLLEESVLKLEQTAYKLDSYSKQLETKFKTMERR 529
            E C +M  K+  YL GEL ATS DYKLLEN+NK+ + KY +M     N+  N+ D+N++Y  L PYL QI+++EE V  LEQ AYKLD+YSK+LE K+K +E+R
Sbjct:   39 ELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEKR 142
The following BLAST results are available for this feature:
BLAST of TCONS_00017193 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BL1S25.577e-3152.88Biogenesis of lysosome-related organelles complex ... [more]
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