TCONS_00017157 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017157
Unique NameTCONS_00017157
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2249

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017157 ID=TCONS_00017157|Name=TCONS_00017157|organism=Clytia hemisphaerica|type=transcript|length=2249bp
attatagatgagaaaataataaagaaagaTTTTGTTCCTCTAAAGTATAA
ATCAAAATGGATGGTGGCTTAGCATCACGTTTGAAGCAGTTTGATGCTTA
TCCAAAAACTTTAGAGGACTTTCGAGTCAAAACATTTGGTGGAGCTGTGG
TTACTGGTGTCAGTTCCCTGATTATGTTCATCTTGTTTGTATCAGAACTC
AATTACTATTTGACAACAGAGGTCCACCCAGAGTTATTCGTTGATACCAC
AAGACATCAAAAACTGAGGATAAATGTTGACATATTCTTCCCCAAAATTG
GATGCGCTTATTTGAGTGTGGATGCAATGGATGTGTCAGGAGAGCAACAG
AGTGATTTAGACCATgatattttcaagaaaagatACGATAAAGATGGAAA
CCCTGTTGAAGAAGCCAAAAAAGAAGaacTCGGAGATAAAAGTGATGAAG
CAATGAAAGCATTGAATGGGACTGCTACAACTCAAGATCCAAACCGTTGT
GAAAGTTGTTATGGTGCAGAATCAAGTGAAATACGctGTTGCAATACATG
TGAAGATGTGCGGAAAGCTTATCGTGTCAAGGGATGGGCTTTAAACGATA
TTGATGGGATTGAACAGTGTAAACGTGAACATTGGAAAGATGCTGTGAAA
GAGCAGGACGGTGAAGGATGTCAAGTTTATGGATACGTTGAAGTCAGCAA
AGTTGCAGGCAACTTTCATATTGCACCTGGAAAGAGTTTCCAAGCAAACC
ATGTGCATGTGCATGATCTTCAACAATATGGAGCAAAACAGTTTAATATA
TCACATCAAATCCGTTCATTATCATTTGGTGTTCCAATCCCGAACGTTCA
AAATCCTTTGGATGGTACCAATATCACTGCCGAAACTGgCTCAGAGATGT
ATCaatattttgtgaaaattgtTCCAACCGTTTATAAAAAATTGTCTGGA
GAGATGGTATGGAGCAACCAATATTCTTTCACAAAACATCGAAGGCGAGT
CCGACAAATGACCGGAGAATCCGGTTTACCAGgttttttcgTGTTGTATG
AATTGTCACCGATGTTAGTTCAATATACCGAAAAAAGAAGATCATTCATG
CACTTTCTGACGGGGGTATGTGCAATCATTGGTGGTATTTTCACAGTTGC
GGGTTTGATTGATTCGATGATTTATCACTCAGCTAAagctttgaagaaga
aaatagaaCTTGGTAAAGCCACCTAGTTGACGTTTCATTTTATTAGGTAG
TTATATGGATTATTTATAGAGATTTGTAAAACCATTTTTTAGCATGTTGT
TCGGATCAATTTGTTCGAAATTATTCATGACTCGATCTCGTTCACAGAGC
CTCTTTGAACCACTctttaccgagtttatgtatcggaggatatccgaggg
cgacggtaagtgatatcgatacaaaacaaagtcgatagttgctGTACGGC
TCTATTTCGCCTTTgttcacctaaacagacgacggtattttggtgttttt
atcgtcgtcgagcaaagtggacggtgattttggagacatgtcaactttgc
tttatacagTCCCCCTCGCGCTATTAGACCGACttcgtgtgacgtcattt
tcacccacAATCAGCCATTTACCTAAGGATACCTAAGGACTAGTAGAAAG
AATATGTACAGGGTGATCTAGTAACAGGTTGGTGACTCAAAGTCttcaaa
tatttcccgtttaGACCTGCCCATagctttttgtttgtttttgtttcgtg
GGTGAAATTTCtgtcagttaggaacaggcaGCTTGTTTGAGGTTTGCTTG
AAGATAGTGCCAAACCGGATTTTGCTGAAGCGGTCTATTAGCATCAGCAA
AAAGTGCGCTAAGGGACTGCATAAGAGTTTGACTACAAATTCGAACCTCA
CCAGCACACCAATATCACTATGCGAAGGAATAGTCTTAAATTGCctgaaa
taatttcaaaattcaaaatcacaACATCGAATTTTACAAATTCGAACGTA
GACTTTATAACCGATTTTACAGGAGagtatttatttaatttttttcatga
tgTTAAATTTCCAAAGTTTATTATTTGAGAGAGCTAAAGTAAAATTGTTG
ttgtaaattttttcatttttgttcgttctttaacattttcattatggata
attttcaaaaaggacGTAGATAATATTTTACAAGAATTTGTACACAAAAA
TACGTATTTGTTTTTCGGGATTTTTGGAATAAAATTATGAAACTAGAAA
Run BLAST on NCBI

transcript from alignment at sc0000260:320223..331845+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017157 ID=TCONS_00017157|Name=TCONS_00017157|organism=Clytia hemisphaerica|type=transcript|length=11623bp|location=Sequence derived from alignment at sc0000260:320223..331845+ (Clytia hemisphaerica)
attatagatgagaaaataataaagaaagaTTTTGTTCCTCTAAAGTATAA
ATCAAAATGGATGGTGGCTTAGCATCACGTTTGAAGCAGTTTGATGCTTA
TCCAAAAACTTTAGAGGACTTTCGAGTCAAAACATTTGGTGGAGCTGTGG
GtgagtaaaaaagaaaaataaatcttatAAGTCTTACtacatcaaaaaat
gcttttttgagaaatttgagaTGAAACATTGGTCAAGAACCAATTataag
tttttagttttttataatttgttgAAAAGAGAGTTCTTCAATGTCAATGa
taaattttaggaaaaaatcAGACTGTGGTGTATTTGTTTAATGTGAAAAT
GAATCCATGCATATATGTCTGGAATTGGGATCTATTTGTTTATTTGCAAT
GGGGCCAAAATAAATGaacaagatttaaaaaagaaatacatTATTCATAC
TACATcgcttattattttttcttctgtcgtaaaaaaaacaataattatag
atctttaaaatcttaaacaaTAATGTCTGGGTTTATTTTTTGGAGACCCA
GCTTTAACTCACTATCTGATGTCatgaaatatttgtttttttccagTTAC
TGGTGTCAGTTCCCTGATTATGTTCATCTTGTTTGTATCAGAACTCAATT
ACTATTTGACAACAGAGGTACGTTTGTAAATACTATAAAAAGTGTACAca
cagggggggggtcggtactaaaatctcaaacatcatgacatttagtgacg
tggtggtactgcaaaaaagctcaaaaataattttagtaccatgtgtacta
aaataccaaaaagggtggtcccttaaagaaatttttgaaaaatcttagta
ttttgttctaaaatcagccaaaatggagcatttttttaacaattttggaa
aaaatttgatttttttttcaggaatttttgaaaaaatcttcagaaagctt
tcagaatttttccaattttttaaatctttttatgtacagttcagcacagt
ttagtaataaaattatattattttgcagattgatgcactaaattcgacta
ggtttgtaacaatgaccccatttttgtaaatttaaagccgtaaaagggca
aaaaatgggtggtatctatgttaaattgctcaaaaaaattttagtacatg
tgtactaaaataacattttcgaaaaaaaggtgggggtatgtcaaaaatta
gtgaaaatccttttagtactcatgtatgtcttacattttagtactgaccc
ccccccctggtacACAAGTTTTATTTAATGTATTTAAAATTGATAGAcac
ttttcttaaaaaattacttttttttgaacgaaattgttttgcatattttt
cttcataatttTTGGACAGGTGAACTAAATTAATGtaataaaagctcaaa
atttaagttagcttTCCCCCTTTTCAATCTTGTGAGAGGTTTTGAGTGGT
AACATTTTCTAGTTTCCTGATAATCTCAATTGAAGCttgtaaactttttt
tgaaacatctgATAGAAGAAAAACACACTTTGGTAGCTTCCTTTGTATTT
GTCAATAAAGATCACTCGTACTTTTGCTACAATTCTTAAGAGAAATAATT
AATTTGCTCGTGTTATTAGGTCCACCCAGAGTTATTCGTTGATACCACAA
GACATCAAAAACTGAGGATAAATGTTGACATATTCTTCCCCAAAATTGGA
TGCGCTTGTAAGTTTAATATAATTTCACAGCTATAAAAAGTAGTTATTTC
ACACATTTGGGATTCCTAGTCGCTTTAAAAGGTTTTTCCACAATGATGag
acaaaatattttccagTTTTTGACAGATCTGTTTGTGTCCTCTTCTGCAG
TTCCTTGATTTTTGTTGTAAACTCTCTTTTCTATTATGCCATTGAGTGAA
GTATGTATAATAAACTGGTATAATTATTGTCTATTTTAGCTTTATCAGTG
ACTTTGGtctataaaaaaatatcttaaatgACTAAGATTCTGATTTCAAG
CTCGGAGCTTTATTCATTGCGCTTCCACTCCAATTTTCAATGGAATAGGA
TTTTGCCAATGTACAGTGTAAATGTAtggtaataattttttttcttgatc
ttCAGATTTGAGTGTGGATGCAATGGATGTGTCAGGAGAGCAACAGGTAA
AGGCTTTTATGAGAATAGACTTATACAAGAACATGAGGCTTTGCGTACGT
TTTCTGTATTGGCCTTCGTCAAAATATTGACGCACGGGTCAAACTGTGAC
AATACAAAAACTGGTCTTTTTAGCTTAGAAACTTCGTTTTTCTCAACAAT
TCGATACCCTCTTTTCCAAAAGAGAATCTGTTATCAGGCTTATTTTTCTG
GCGAGAAGGCCCACTACATGAAGCAACAGAGTGTTTGTTCATCCCTCCAT
TGTATTTGCTTAAATGGAAAATTGTCTGGTAAATATCTCTTCATAAAATC
TTTTAATCAAACTTTCCAATTAAAAGATAATATAATTACTCCTAAACAAG
GAGGGACANTCATCCCTCCATTGTATTTGCTTAAATTGAAAATTGTCTAG
TAGATAACTCTTCATATAATTGTTTAATCAACCTTTTTCAACTAAAATAT
AATAATTACTCGTAAACAAGGAGGGACGTGGGTTATTATACATAATAGAT
GCTAACTTTAGCTTACTAGCTAGAGTTAACCTTTGCAATGATcataatat
ttcataatttcacTTTCAGAGTGATTTAGACCATgatattttcaagaaaa
gatACGATAAAGATGGAAACCCTGTTGAAGAAGCCAAAAAAGAAGGTATA
AGCTGTGACTGCTTTAAGAAGCTTGAATTTAACTTCCTGCCCTAATccca
tagtttctacccccctacatttaggaggggggtcttgggttttgatgaac
caaaagcaaggggggGTGTTAAAAGTTTGACATACCTAAgggggggtctt
cttagataaggggggatcttccttgaattatgactcttgtacaatcgttt
catttatactgattttctaagcggagtgaaattttaaatgaatttcctaa
ggggggttagcacttaaggggggtcctcttacctaaagggggggggtctt
gaccccctctagaaactatgaatCCAAAGTTGATAGCCAATAGACAGTGT
CGTTAAAccacaatcatggacaaaacatTTGAGACAAAGGCGAATTCcct
gtgaaattttaaacaccatttttaagcgcgttaaactacaggtggaaagt
agagttttaacatgggACTTAAGACTTATAACCTTAGAATCTCAGGATTT
Aagagctcaaatttgctccaataaggcttggaatatagcctagaagccag
cGAACCCCTCCAAGATcgaaaatattcaatgaaagaaaatggaagtgcta
aaatagcaattctcgcccaaactttaaattctgaaaaactaaAATCAGTA
GTTCGATTGAAATTCATTTCCATGCTGTTCTCAATTtccactttatattt
ttttcttcttttttcagaacTCGGAGATAAAAGTGATGAAGCAATGAAAG
TAAGCCATAGGAATTATCGATTCAGTGTGACTTTTATAAATTTACTTACC
ATGTCAAAGAGAAcaaatgtattttttatttcttttcttgttCAAACCTT
GATTTTCTGGATTTCtccttttatcatttttaacCTTAAAGGTATTGGGT
TTTGTTGAAATTGTAGAAAACTCTTTTTTTATCAAGGTTTTCATATATTT
TGTGATTACAGGCATTGAATGGGACTGCTACAACTCAAGATCCAAACCGT
TGTGAAAGTTGTTATGGTGCAGAATCAAGTGAAATACGGTAAGTTTCTCT
ATGAAGTCAGAAATTAGGAGAAACTAGTTGAATCTTCGTGGCAACTTGAT
TGAATTATTgtcctttagaaaaaaattgtaaatttcaatCAGACCactaa
aatactcaaaaaaaatctatgatttttcaaaataaaatgattatgAAATG
ACAAATGCAGATTGATTAGttttaattctcaaacttttGGCTACTGGAGA
CTATTCAACTGACTCGATACCCAATATTCAAATATTCATACTGATTATGC
TTAGTTGAGTTAAAGGTTGATCAAATCCCTCAATAACAATATTCCTTCGA
AATAATTTTACATAATCggctaaatttttatttcagctGTTGCAATACAT
GTGAAGATGTGCGGAAAGCTTATCGTGTCAAGGGATGGGCTTTAAACGAT
ATTGATGGGATTGAACAGGTAAGAATTCCTTCTTGGATCAATGTACAATA
GAGTCATAACTCGAACATACACGTGGGaataaaatttgttcgagtaaaGG
AAATTTCTAGTTATGGAATAAGGTTTTTTGTTAACTGaagtgatttaaaa
aaacatcCGAGTCATAGATTCGAGTtaaaagagactccactgtatttttT
AACTAAGAAAGTACAATGTAgaatattatattattatataaatgTATTCA
TCCACTAAGCCTGAAGGGGTAACTAAAGGTCGTCTATAGTAAGGCCTGTA
GACAAAAAGGAAGGCCTGAAACTGTTTATAATGGCAATGAAGACTATATT
TTATAATAAACTATAGTTAGGCATATGAATTCAATTTTTGCTATTTTCNT
CTACTGACTCCACTCCACTCCACATTAATCCTTGGTtaatttttgctaat
tttttcaGTGTAAACGTGAACATTGGAAAGATGCTGTGAAAGAGCAGGAC
GGTGAAGGATGTCAAGTTTATGGATACGTTGAAGTCAGCAAAGTAAGAAG
GCAGTTTCTATTTATCAATTGTAAATAATTTTAGTCATCGTGGCAATACT
AAGAAAATAACAAAGTTCTATTGAAAAACTGTCAAACTGCAGTCTTTACG
ACCCTGAACTGCAAGTTTCCACAATACCACAGAAACAATACATATCTAAA
GTTAGACACTCAATTGAGCTTCTTTTTTCTGTGCTTTGAACCTTTGATCA
ATTCgacacattttttattttttttcattctagGTTGCAGGCAACTTTCA
TATTGCACCTGGAAAGAGTTTCCAAGCAAACCATGTGCATGGtgagaaga
ttttcttttgtttttggatttttNTTTCATATTGCACCTGGAAAGAGTTT
CCAAGCAAACCATGTGCATGGTGAGAAGATTCTTTTGTTTGAATCTTAAG
ATTtgaattttgtatgaagagATTCAGTGAGATTTGCTTTTATGTTCATA
AAAGTTAGATTTGTTAAAATTCATGATCCATGATTTTTAGACTGCCACCC
CTATTTTGCTGTGTAAAGAAGTTTAATCGTACTAATAAGTCAAAGTATCA
AAATACCTAAAGCTATAACCTTAAACTTAAATTAATTATACAGGAACAGA
AAACTAGTTTTAAGAACTAATTTTTTTGATCAAATTAAAACCGTAAAGTT
TTTTTAGATCCCCAAAGGATTTCTTCCTTTAACTAGATAAACTTGATAAA
CTTTAAATTGCCtgctcaattttaaaaacaaccaGAGGTAATATACAGTT
TTTGATCACATTCTTTTGTTTGAATGGTCACATTGTTATGTTTTTGTGTG
TTAAAAGTGTTATATGTTTGTTTTCTTCTTAATGTTCAGTCCAACTTATT
AAAATCGGGAAAGATGGAAAGATTTCAATGAATAGTAAGTCCCTGTGGTA
CACACACGTCCTAGAATTTTTCTTGCACTTCCAGAGTAGTGAAAACTAAA
CatctttaaattcactttaaactTTAACTTAAGATCCCTTCGCTTTAggt
atacactcttttttaccATGTGGGAACCATGTTAGCGTAATCAGGGGGAT
TTttttgagagtggtttccacatgataGATAAAAggagtgcacacttaaa
gcgaataTGACacctttatgtttaaaattctaaaatgcTANTTTAAATTC
GCTTTAAACTTTAACTTAAGATCCCTTCGCTTTAGGTAAATATTATTAAT
ATAAAGTCTTCCGGGGTGGTAGTTGTTCGTTGTTGTTCGTTGttgtttaa
actttaaaacgTGTTATGGTGTATTTTTAAATCTGttaaaagtgcaaaaa
aagtccaattgaaaaatttgaaaaaaactttatccTATTTCAGTGCATGA
TCTTCAACAATATGGAGCAAAACAGGTAATATTATTCTGCTTTTCCTACC
AAAATTAGATTAAGTATCGGTATATAGCTACGTAGTTACCTACTTTTGAC
AACCCGACACTCCCTTCCATCGTCTATCTACTGTACAACTACATAAGAAT
TCCTTTAGTAAGAATCACAAGGCTCGAATTTGCAAAATTATAGGAATTTC
TTAAGAATCATCCTCAGCCTCgaaaattttgttggttgttTTCTTcagtt
taaaaatgtttaaaggaagaaattttgggcGGGAATTTAATATGGCGGAT
AGCCGAAAAAGCTTTTtgcagagggaatttaatttaagCAGTTAACttgg
aaaattaaatttggcggattttgaccaaatcatgaccgccaaaatttctt
cctgttGTAAGTTTACAGGCGCCGCGGCAGCGGTAGGGCCGGTCGGGCCA
TGGCCCGACCACTTTTTTTCagagtaaagaatttttttttaagtaaaaaa
ttaatttttcaaatggNATCCGTTCATTATCATTTGGTGTTCCAATCCCG
AACGTTCAAAATCCTTTGGATGGTACCAATATCACTGCCGAAACTGGTAA
Gtcccgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcg
ttcgttcgtttgcaCTATTGTCATCATTCTCTATTATTCACTTGATTGCT
AAAATTTTACTTccttcttttgaattttttgagtcTTAGTTGGAGATTGG
CCTTAATTTAGTTCTCAGATGTTGGCCGATATCAAATGTGAGGATTGAGA
TTATCTGTTATCACgatattattttcatttcttttttcaggCTCAGAGAT
GTATCAATATTTTGTGNGCTTTCTTGCAAGATAAAAACATTACCTTGCGC
ATGATATTCAAGCGCTTTATGAGCTTTATCTTCTTCAAGAAAAGGGGCTG
TTTTAGCCAGTCTAGAGGAgtgaaattcgcaaaattttctagcccatcgg
cgccaaccatggtggcgcctccttagacactatattATGTGGCCCGACCA
CTTAAAATGTCGAGCCGCGGCGCCTGGTTTATAGGGTATTTCTCCCCCTG
CTTCTTAAATAGAATGATAAAGTTTGGTtttgccaaattaaactttaaaC
GGCCACTCCTGAGCACTGGTCATGCGCACACAGTATCAATAATTTGTCTC
TTTTCTTTCAGTTTAATATATCACATCAAATCCGTTCATTATCATTTGGT
GTTCCAATCCCGAACGTTCAAAATCCTTTGGATGGTACCAATATCACTGC
CGAAACTGGTAAGtcccgttcgttcgttcgttcgttcgttcgttcgttcg
ttcgttcgttcgttcgttcgtttgcaCTATTGTCATCATTCTCTATTATT
CACTTGATTGCTAAAATTTTACTTccttcttttgaattttttgagtcTTA
GTTGGAGATTGGCCTTAATTTAGTTCTCAGATGTTGGCCAATATCAAATG
TGAGGATTGAGATTATCTGTTATCACgatattattttcatttcttttttc
aggCTCAGAGATGTATCaatattttgtgaaaattgtTCCAACCGTTTATA
AAAAATTGTCTGGAGAGGTAATTCGAAATTTAAGTCACCGTATTAATTTG
AGACAGTCTTAGGCCTATTTTCAGTTCGCATTTCGagtgaaattaaattt
tgataaaaaaccaTTAAGTCTCGACTATTGTAATTTTTCCAATTCAAGAA
AGACCTGACTTACTTAACATCAATTCTTGCTGGTCATTgaggccaatttt
tttttaaaagctgGCTTGCAGATTAACGTGTTTATGCTCTTATGTCAATT
TTAGAAAAGGTTGCTAAGATCCTGAATTGATACGGAGATATGTTTAAACT
AGGAGTTTCTTGACCTTGAAACAAGGATGTTTACTATAAAAGAGCTTCTT
GCTAGAAAAAGCTTCTTTGGGTTGTTTTCAGGCTTCAATCTTATTTTCTC
ATAGCCCATCGATCAGACCGGGCTTGGAAGTTTTTAAAATCTTGAAGATT
CCAAAGTTAATGAGGAAACTCAGAGAGCCCTGTTTTTCTCTATGGATGAC
TGTTTCTTCTTTggggagaaaaaactttaaaacatgGTAACAACTTTACA
CATTATTATTCTTTAGATGGTATGGAGCAACCAATATTCTTTCACAAAAC
ATCGAAGGCGAGTCCGACAAATGACCGGAGAATCCGGTTTACCAGGTATG
TTTGTGTTTGTTACTTTATTCATTTGTACTTATTTTACTCTACTTAGTTG
TTTTTACAATAGACCTTTCATagattacgtcacaaacatcacttgcctcg
tattcaaacaattatcaTGGTTATTATGTCTCCTTGAGACatagtagttt
taataaaatccgctgggagttatcatcatggcaataatttcaaaacgaga
caagtgatgtttatgacataatttatgaaaaggtctatcgtgGCCATTCT
CACTGAAAAGTTCAATACAATACACATATAAACTGCTTGCAAAATTGTTG
TGCTAAATATGTCTAAAGTATGCCTCAATTTGCAGCGATGTTATgaagat
tattttgaaatagaGCCTGTAGttggtaaattttcaaacaataaaCGTAT
CGGTTATCTCaaaaatttggtgatttttgtGCTTCGTCGAATATATACTT
TCAAACAATATTTACGCTAATGTTTTTTCActtcttttttcaggtttttt
cgTGTTGTATGAATTGTCACCGATGTTAGTTCAATATACCGAAAAAAGAA
GGTAATATTATTGATTAAGAAAGAGAGTTTTCAGTATTCGCGTTTATGCG
TCGTCAAATATTCTCTCTTAACAGAGTTAAAGGTTTTTCCTGTCAGATGG
ATTTCCGTCTCAGCGAGCTGGAAAAATGGCCTTTTCCGTCTAAAGATGCT
Gcataattttaccaaaatacacaggttgcatagttaaagtctgaagacaa
atcacgtttttattcgaaatttttatgtgcttgttacataacatttattt
ctgattgggtcgaatttattgacactaatagaGTTATCACCTATAAGTCG
TAAAgtaagtaacatgggaataaaatcacgtgaactttttcgaataatca
catgttttgactgtattgatataattttgcaaccggtGTATTTCAAGAAT
GTGCTAAATTACTgtgtaaaatcaattttccgttAATTTTCTGTCACGAA
GAAccttgttttgacagttaactGCTCTAAGGCAATTACCGCAATTAGAT
TTGGATATGAAGAAACAGGCTTGTGCTAGACTTGGAACTTAGACCTATTG
TAAACTTATTGTGTTACGACCTACAAGGACATTCTTAAAAAAGAGAACTA
AGGGACTTAGCAATCATTTAAAGATCGTTCTACAATAGACTTTTAGTATG
GCTATTAAATCTTGTTTTATTCACGCTTCTAGATCATTCATGCACTTTCT
GACGGGGGTATGTGCAATCATTGGTGGTATTTTCACAGGTGAGAACCTTC
CCCATTTATCGATTTACCGCTAAAGTTCATTCGTTTTAAGTGTGCTCTCT
CTTTTGCTTTTTTGGCCGGGTAGCTCAGCCAGTAgggcattcgccttaca
attcAAGGGCTTAGGGTTCGATCCCTGGTTACCGTCAACTCAGCGAATGA
GTAGCTTGGATTAGGACAACCCTgtgtcccagacccgctggaaccccagc
cccactggaaaatttggcaaaaatttcgtccccggtgggaaaatacacTG
GATTTTCAGCCCCATTGcgaaattgacttttatttcatctccattcgaaa
ttcagtgtttaaaaattgtactccaaaaccatccccactgaattttttaa
ccttgaaacaatagaatttctatccgattgggatttcaataggaattttc
atCCTCGATGAAAAaaagggctgtgagacagggtgtaTTAGGTAATCTGA
TGCATACATTCAGAAAAGATGTGGCGTGTTGAATGAGACGCTCTGACATG
GTTGTCcagtcaaaaacattcaaaacagcGTTGCTTTTTGTCTAAAAACC
AAAGTGAAAGCGACTAGGTTCTAATATTTATTTGTGTTTTTGATTGGGCG
TAATTCCCTAATGAACTAAATCGTCTTAAACCATGTTCGTACGTagcggt
tccgtttcgctccgaaacgaaatgaagccattctattggttagaagtgac
gtaaaacttgaatttaTCCAATAAAATTGCATTATTTTGTTTCAGGTTGA
AACGGAGCCGTAGCGTGTGAACAAGGTCTTAGGCTTTGTCACTGATTTGT
ATTTCATTCTGTCTTTTTAGTTGCGGGTTTGATTGATTCGATGATTTATC
ACTCAGCTAAagctttgaagaagaaaatagaaCTTGGTAAAGCCACCTAG
TTGACGTTTCATTTTATTAGGTAGTTATATGGATTATTTATAGAGATTTG
TAAAACCATTTTTTAGCATGTTGTTCGGATCAATTTGTTCGAAATTATTC
ATGACTCGATCTCGTTCACAGAGCCTCTTTGAACCACTctttaccgagtt
tatgtatcggaggatatccgagggcgacggtaagtgatatcgatacaaaa
caaagtcgatagttgctGTACGGCTCTATTTCGCCTTTgttcacctaaac
agacgacggtattttggtgtttttatcgtcgtcgagcaaagtggacggtg
attttggagacatgtcaactttgctttatacagTCCCCCTCGCGCTATTA
GACCGACttcgtgtgacgtcattttcacccacAATCAGCCATTTACCTAA
GGATACCTAAGGACTAGTAGAAAGAATATGTACAGGGTGATCTAGTAACA
GGTTGGTGACTCAAAGTCttcaaatatttcccgtttaGACCTGCCCATag
ctttttgtttgtttttgtttcgtgGGTGAAATTTCtgtcagttaggaaca
ggcaGCTTGTTTGAGGTTTGCTTGAAGATAGTGCCAAACCGGATTTTGCT
GAAGCGGTCTATTAGCATCAGCAAAAAGTGCGCTAAGGGACTGCATAAGA
GTTTGACTACAAATTCGAACCTCACCAGCACACCAATATCACTATGCGAA
GGAATAGTCTTAAATTGCctgaaataatttcaaaattcaaaatcacaACA
TCGAATTTTACAAATTCGAACGTAGACTTTATAACCGATTTTACAGGAGa
gtatttatttaatttttttcatgatgTTAAATTTCCAAAGTTTATTATTT
GAGAGAGCTAAAGTAAAATTGTTGttgtaaattttttcatttttgttcgt
tctttaacattttcattatggataattttcaaaaaggacGTAGATAATAT
TTTACAAGAATTTGTACACAAAAATACGTATTTGTTTTTCGGGATTTTTG
GAATAAAATTATGAAACTAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009601XLOC_009601Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017157-exon-sc0000260-1491911889:320223..320372TCONS_00017157-exon-sc0000260-1491911889:320223..320372Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1510915933:320223..320372TCONS_00017157-exon-sc0000260-1510915933:320223..320372Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1575043694:320223..320372TCONS_00017157-exon-sc0000260-1575043694:320223..320372Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1491911889:320819..320889TCONS_00017157-exon-sc0000260-1491911889:320819..320889Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1510915933:320819..320889TCONS_00017157-exon-sc0000260-1510915933:320819..320889Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1575043694:320819..320889TCONS_00017157-exon-sc0000260-1575043694:320819..320889Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1491911889:321842..321929TCONS_00017157-exon-sc0000260-1491911889:321842..321929Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1510915933:321842..321929TCONS_00017157-exon-sc0000260-1510915933:321842..321929Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1575043694:321842..321929TCONS_00017157-exon-sc0000260-1575043694:321842..321929Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1491911889:322328..322368TCONS_00017157-exon-sc0000260-1491911889:322328..322368Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1510915933:322328..322368TCONS_00017157-exon-sc0000260-1510915933:322328..322368Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1575043694:322328..322368TCONS_00017157-exon-sc0000260-1575043694:322328..322368Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1491911889:322942..323017TCONS_00017157-exon-sc0000260-1491911889:322942..323017Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1510915933:322942..323017TCONS_00017157-exon-sc0000260-1510915933:322942..323017Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1575043694:322942..323017TCONS_00017157-exon-sc0000260-1575043694:322942..323017Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1491911889:323740..323771TCONS_00017157-exon-sc0000260-1491911889:323740..323771Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1510915933:323740..323771TCONS_00017157-exon-sc0000260-1510915933:323740..323771Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1575043694:323740..323771TCONS_00017157-exon-sc0000260-1575043694:323740..323771Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1491911889:323984..324060TCONS_00017157-exon-sc0000260-1491911889:323984..324060Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1510915933:323984..324060TCONS_00017157-exon-sc0000260-1510915933:323984..324060Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1575043694:323984..324060TCONS_00017157-exon-sc0000260-1575043694:323984..324060Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1491911889:324409..324490TCONS_00017157-exon-sc0000260-1491911889:324409..324490Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1510915933:324409..324490TCONS_00017157-exon-sc0000260-1510915933:324409..324490Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1575043694:324409..324490TCONS_00017157-exon-sc0000260-1575043694:324409..324490Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1491911889:324931..325014TCONS_00017157-exon-sc0000260-1491911889:324931..325014Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1510915933:324931..325014TCONS_00017157-exon-sc0000260-1510915933:324931..325014Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1575043694:324931..325014TCONS_00017157-exon-sc0000260-1575043694:324931..325014Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1491911889:325256..325280TCONS_00017157-exon-sc0000260-1491911889:325256..325280Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1510915933:325256..325280TCONS_00017157-exon-sc0000260-1510915933:325256..325280Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1575043694:325256..325280TCONS_00017157-exon-sc0000260-1575043694:325256..325280Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1491911889:325360..325392TCONS_00017157-exon-sc0000260-1491911889:325360..325392Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1510915933:325360..325392TCONS_00017157-exon-sc0000260-1510915933:325360..325392Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1575043694:325360..325392TCONS_00017157-exon-sc0000260-1575043694:325360..325392Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1491911889:326366..326397TCONS_00017157-exon-sc0000260-1491911889:326366..326397Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1510915933:326366..326397TCONS_00017157-exon-sc0000260-1510915933:326366..326397Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1575043694:326366..326397TCONS_00017157-exon-sc0000260-1575043694:326366..326397Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1491911889:327584..327680TCONS_00017157-exon-sc0000260-1491911889:327584..327680Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1510915933:327584..327680TCONS_00017157-exon-sc0000260-1510915933:327584..327680Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1575043694:327584..327680TCONS_00017157-exon-sc0000260-1575043694:327584..327680Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1491911889:327925..327989TCONS_00017157-exon-sc0000260-1491911889:327925..327989Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1510915933:327925..327989TCONS_00017157-exon-sc0000260-1510915933:327925..327989Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1575043694:327925..327989TCONS_00017157-exon-sc0000260-1575043694:327925..327989Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1491911889:328539..328617TCONS_00017157-exon-sc0000260-1491911889:328539..328617Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1510915933:328539..328617TCONS_00017157-exon-sc0000260-1510915933:328539..328617Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1575043694:328539..328617TCONS_00017157-exon-sc0000260-1575043694:328539..328617Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1491911889:329116..329173TCONS_00017157-exon-sc0000260-1491911889:329116..329173Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1510915933:329116..329173TCONS_00017157-exon-sc0000260-1510915933:329116..329173Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1575043694:329116..329173TCONS_00017157-exon-sc0000260-1575043694:329116..329173Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1491911889:329855..329910TCONS_00017157-exon-sc0000260-1491911889:329855..329910Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1510915933:329855..329910TCONS_00017157-exon-sc0000260-1510915933:329855..329910Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1575043694:329855..329910TCONS_00017157-exon-sc0000260-1575043694:329855..329910Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1491911889:330743..331845TCONS_00017157-exon-sc0000260-1491911889:330743..331845Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1510915933:330743..331845TCONS_00017157-exon-sc0000260-1510915933:330743..331845Clytia hemisphaericaexon
TCONS_00017157-exon-sc0000260-1575043694:330743..331845TCONS_00017157-exon-sc0000260-1575043694:330743..331845Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000260supercontigsc0000260:320223..331845 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.3969	7.89343	1.34666	1.00426	13.1061	10.4024	19.2697	17.6517	16.5583	17.8541	13.5513	12.429	13.798	12.4779	10.3335	10.3214	12.5536	14.1067	6.95197	10.2524	9.53844	9.29697	11.983	12.4915	15.6487	15.0329	8.68027	8.54718	13.7232	13.258
Blast
[Close]
BLAST of TCONS_00017157 vs. Swiss-Prot (Human)
Match: ERGI3 (Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Homo sapiens GN=ERGIC3 PE=1 SV=1)

HSP 1 Score: 500.745 bits (1288), Expect = 5.211e-171
Identity = 242/383 (63.19%), Postives = 304/383 (79.37%), Query Frame = 3 
Query:   78 RLKQFDAYPKTLEDFRVKTFGGAVVTGVSSLIMFILFVSELNYYLTTEVHPELFVDTTRHQKLRINVDIFFPKIGCAYLSVDAMDVSGEQQSDLDHDIFKKRYDKDGNPVE-EAKKEELGDKSDEAMKALNGTATTQDPNRCESCYGAESSEIRCCNTCEDVRKAYRVKGWALNDIDGIEQCKREHWKDAVKEQDGEGCQVYGYVEVSKVAGNFHIAPGKSFQANHVHVHDLQQYGAKQFNISHQIRSLSFGVPIPNVQNPLDGTNITAETGSEMYQYFVKIVPTVYKKLSGEMVWSNQYSFTKHRRRVRQMTGESGLPGFFVLYELSPMLVQYTEKRRSFMHFLTGVCAIIGGIFTVAGLIDSMIYHSAKALKKKIELGKAT 1223
            +LKQFDAYPKTLEDFRVKT GGA VT VS L+M +LF+SEL YYLTTEVHPEL+VD +R  KL+IN+D+ FP + CAYLS+DAMDV+GEQQ D++H++FK+R DKDG PV  EA++ ELG      ++       + DP+RCESCYGAE+ +I+CCNTCEDVR+AYR +GWA  + D IEQC+RE +   ++EQ  EGCQVYG++EV+KVAGNFH APGKSFQ +HVHVHDLQ +G    N++H I+ LSFG   P + NPLD TN+TA   S M+QYFVK+VPTVY K+ GE++ +NQ+S T+H +    + G+ GLPG FVLYELSPM+V+ TEK RSF HFLTGVCAIIGG+FTVAGLIDS+IYHSA+A++KKI+LGK T
Sbjct:    6 KLKQFDAYPKTLEDFRVKTCGGATVTIVSGLLMLLLFLSELQYYLTTEVHPELYVDKSRGDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKQRLDKDGIPVSSEAERHELG-----KVEVTVFDPDSLDPDRCESCYGAEAEDIKCCNTCEDVREAYRRRGWAFKNPDTIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLDNINMTHYIQHLSFGEDYPGIVNPLDHTNVTAPQASMMFQYFVKVVPTVYMKVDGEVLRTNQFSVTRHEKVANGLLGDQGLPGVFVLYELSPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGKTT 383
The following BLAST results are available for this feature:
BLAST of TCONS_00017157 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ERGI35.211e-17163.19Endoplasmic reticulum-Golgi intermediate compartme... [more]
back to top