|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017140 ID=TCONS_00017140|Name=TCONS_00017140|organism=Clytia hemisphaerica|type=transcript|length=1157bp
CTTAGATGACTTATACATACATATTTGGTTAGAATGATTAGTACTTAATT
TGTCGTTTTAGTGATTAACATACCAAAAGAGTGAATATCAAATTAACAAC
AAGATAAAAAGATGGGGTCATGGCTTCTGTTCTTTATTCCAGTGTTATTG
ATTGAAACTCATGACTGTTTACCTGCTGGACAAATGGGGTCTTCCCGTAA
TGACGGCTATCCGGTTACAACGATTGTGTTAAGAAATTCGAGAGATGGAA
ATTGGAAGAGGGATGAAATAATGATGAAGAAGGAGGCGTGGTCATCAATC
AAAGGTGTTAATGACCAGACAACCAGAAGTTTCCGATTACAGAAGAAAAG
AGGCGATCCAGAGAATGTGAACTGGGCTGTACAAGAAGATGAAGATTTCT
TCAACAAAAGGAAAAcgaatttaaatgaaaaatcatCGAATGATAAGAGG
GTGGCAATCTTGTTGGATGCTTATGGATTTAAAATCATGGATGAAGTTAG
AGATCGTCATAGTAAGAAACGATACTTGACAATGAAGAAGGACTACAGAG
AAATTCCAGTATCCTTTTATAATAATAGATTTGTACCAGAAGTTGACATT
TAAGACGACTGTGTCTGCAGTTTATTTTCAACTCCTCTATCATATCTGCT
GAGGGAAAAAAATCGGGACTTTTCCTTATTTTATGAAATTAGATTTTACG
ATCCTAATGCTAGTCCAATCCTAAGAGAGACTTTTAAGACACTCTTAAGG
GAGAGCTACATAACTGTGCTGCTCATTTTACCCATCAAAATCAGTCCTTG
AGATGCTGTCGTTGCAATCTTTTAGAGTCGGTTGATCTCAAACACAACTG
TTGACATAAAATGTCTTTATCTatccaattcatgatatgcaccattgcaa
tgtcttctgacatttcATCAGGGATCcaaaagctgattggttgtaagtga
tgaaaatacgtcactttaaaccaatcagctgttgggtgcGCGGAAGACAT
TGcgatggtgcatatcatgaattaggctttaaaaatatcaatgtgTAGAC
CATTTTATACTTATTTTTTACATACAAGATATTTGACTTTCATTTGATGT
AGTTGTAGCTTGGTTTAATgatatgaaatttttaaaagataaaCAGTTTC
ATTTGCT Run BLAST on NCBI protein sequence of TCONS_00017140-protein >TCONS_00017140-protein ID=TCONS_00017140-protein|Name=TCONS_00017140-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
MGSWLLFFIPVLLIETHDCLPAGQMGSSRNDGYPVTTIVLRNSRDGNWKR
DEIMMKKEAWSSIKGVNDQTTRSFRLQKKRGDPENVNWAVQEDEDFFNKR
KTNLNEKSSNDKRVAILLDAYGFKIMDEVRDRHSKKRYLTMKKDYREIPV
SFYNNRFVPEVDI Run BLAST on NCBI transcript from alignment at sc0000259:279098..280254 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017140 ID=TCONS_00017140|Name=TCONS_00017140|organism=Clytia hemisphaerica|type=transcript|length=1157bp|location=Sequence derived from alignment at sc0000259:279098..280254 (Clytia hemisphaerica)
AGCAAATGAAACTGtttatcttttaaaaatttcatatcATTAAACCAAGC
TACAACTACATCAAATGAAAGTCAAATATCTTGTATGTAAAAAATAAGTA
TAAAATGGTCTAcacattgatatttttaaagcctaattcatgatatgcac
catcgCAATGTCTTCCGCgcacccaacagctgattggtttaaagtgacgt
attttcatcacttacaaccaatcagcttttgGATCCCTGATgaaatgtca
gaagacattgcaatggtgcatatcatgaattggatAGATAAAGACATTTT
ATGTCAACAGTTGTGTTTGAGATCAACCGACTCTAAAAGATTGCAACGAC
AGCATCTCAAGGACTGATTTTGATGGGTAAAATGAGCAGCACAGTTATGT
AGCTCTCCCTTAAGAGTGTCTTAAAAGTCTCTCTTAGGATTGGACTAGCA
TTAGGATCGTAAAATCTAATTTCATAAAATAAGGAAAAGTCCCGATTTTT
TTCCCTCAGCAGATATGATAGAGGAGTTGAAAATAAACTGCAGACACAGT
CGTCTTAAATGTCAACTTCTGGTACAAATCTATTATTATAAAAGGATACT
GGAATTTCTCTGTAGTCCTTCTTCATTGTCAAGTATCGTTTCTTACTATG
ACGATCTCTAACTTCATCCATGATTTTAAATCCATAAGCATCCAACAAGA
TTGCCACCCTCTTATCATTCGatgatttttcatttaaattcgTTTTCCTT
TTGTTGAAGAAATCTTCATCTTCTTGTACAGCCCAGTTCACATTCTCTGG
ATCGCCTCTTTTCTTCTGTAATCGGAAACTTCTGGTTGTCTGGTCATTAA
CACCTTTGATTGATGACCACGCCTCCTTCTTCATCATTATTTCATCCCTC
TTCCAATTTCCATCTCTCGAATTTCTTAACACAATCGTTGTAACCGGATA
GCCGTCATTACGGGAAGACCCCATTTGTCCAGCAGGTAAACAGTCATGAG
TTTCAATCAATAACACTGGAATAAAGAACAGAAGCCATGACCCCATCTTT
TTATCTTGTTGTTAATTTGATATTCACTCTTTTGGTATGTTAATCACTAA
AACGACAAATTAAGTACTAATCATTCTAACCAAATATGTATGTATAAGTC
ATCTAAG Coding sequence (CDS) from alignment at sc0000259:279098..280254 >TCONS_00017140 ID=TCONS_00017140|Name=TCONS_00017140|organism=Clytia hemisphaerica|type=CDS|length=492bp|location=Sequence derived from alignment at sc0000259:279098..280254 (Clytia hemisphaerica)
TTAAATGTCAACTTCTGGTACAAATCTATTATTATAAAAGGATACTGGAA
TTTCTCTGTAGTCCTTCTTCATTGTCAAGTATCGTTTCTTACTATGACGA
TCTCTAACTTCATCCATGATTTTAAATCCATAAGCATCCAACAAGATTGC
CACCCTCTTATCATTCGatgatttttcatttaaattcgTTTTCCTTTTGT
TGAAGAAATCTTCATCTTCTTGTACAGCCCAGTTCACATTCTCTGGATCG
CCTCTTTTCTTCTGTAATCGGAAACTTCTGGTTGTCTGGTCATTAACACC
TTTGATTGATGACCACGCCTCCTTCTTCATCATTATTTCATCCCTCTTCC
AATTTCCATCTCTCGAATTTCTTAACACAATCGTTGTAACCGGATAGCCG
TCATTACGGGAAGACCCCATTTGTCCAGCAGGTAAACAGTCATGAGTTTC
AATCAATAACACTGGAATAAAGAACAGAAGCCATGACCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017140-exon-sc0000259-1491911889:279098..280254 | TCONS_00017140-exon-sc0000259-1491911889:279098..280254 | Clytia hemisphaerica | exon |
| TCONS_00017140-exon-sc0000259-1510915933:279098..280254 | TCONS_00017140-exon-sc0000259-1510915933:279098..280254 | Clytia hemisphaerica | exon |
| TCONS_00017140-exon-sc0000259-1575043694:279098..280254 | TCONS_00017140-exon-sc0000259-1575043694:279098..280254 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000259 | supercontig | sc0000259:279098..280254 . |
Blast
The following BLAST results are available for this feature:
|
