TCONS_00017137 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017137
Unique NameTCONS_00017137
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length676

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017137 ID=TCONS_00017137|Name=TCONS_00017137|organism=Clytia hemisphaerica|type=transcript|length=676bp
TACAACCGAGGGACATATCAAAGCATTGAAATCAACTTTTGATGTGATGA
AAGCTCGTAAAGAACCACTTGGTTTGATCCTAGGTTGGCATTTTATTGGT
TTTATTCTACCGGTATTTTTCTTGGAGAAACTTATGTTCAACGAGATTGA
TAAAACAACGGGAAATGTAACGAATCTGATTGGTccaaatcaatcaatca
aaatgcAAGGATTAAATGTTGATTCTCTATCTTTTTGGCAACCCGCTCTT
TGCAATCAAGCTTTTTCAATTTCGTTTTGTAGTTTTCAAGAACAGATTCG
GATCTCTGCTCAAGCGGATTCTATAGTGATGAACGATCCGGGTATCAtat
tgaacatttttgaaaagaacTTCAACGAACTGGCCAAAAAATACTTATGA
ATTGAGATTTTTAGCCTTTAAAGgacacttaaaggttttgtttttaaata
agagagatatcgtttgcttactcatcaattttaattcacaagctttttca
cattggattgatactgatgtggagcaagattggtcagaaagaggaaagga
aaaacatgttttgcttatatcagcataatataacaatggacttttccaaa
aaaaatttgaatatgggggtggaggatataacaattttcagtgatttacc
ccccggacaaagtgacttttggcccc
Run BLAST on NCBI

protein sequence of TCONS_00017137-protein

>TCONS_00017137-protein ID=TCONS_00017137-protein|Name=TCONS_00017137-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
TTEGHIKALKSTFDVMKARKEPLGLILGWHFIGFILPVFFLEKLMFNEID
KTTGNVTNLIGPNQSIKMQGLNVDSLSFWQPALCNQAFSISFCSFQEQIR
ISAQADSIVMNDPGIILNIFEKNFNELAKKYL
Run BLAST on NCBI

transcript from alignment at sc0000259:248705..249380

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017137 ID=TCONS_00017137|Name=TCONS_00017137|organism=Clytia hemisphaerica|type=transcript|length=676bp|location=Sequence derived from alignment at sc0000259:248705..249380 (Clytia hemisphaerica)
ggggccaaaagtcactttgtccggggggtaaatcactgaaaattgttata
tcctccacccccatattcaaattttttttggaaaagtccattgttatatt
atgctgatataagcaaaacatgtttttcctttcctctttctgaccaatct
tgctccacatcagtatcaatccaatgtgaaaaagcttgtgaattaaaatt
gatgagtaagcaaacgatatctctcttatttaaaaacaaaacctttaagt
gtcCTTTAAAGGCTAAAAATCTCAATTCATAAGTATTTTTTGGCCAGTTC
GTTGAAgttcttttcaaaaatgttcaataTGATACCCGGATCGTTCATCA
CTATAGAATCCGCTTGAGCAGAGATCCGAATCTGTTCTTGAAAACTACAA
AACGAAATTGAAAAAGCTTGATTGCAAAGAGCGGGTTGCCAAAAAGATAG
AGAATCAACATTTAATCCTTgcattttgattgattgatttggACCAATCA
GATTCGTTACATTTCCCGTTGTTTTATCAATCTCGTTGAACATAAGTTTC
TCCAAGAAAAATACCGGTAGAATAAAACCAATAAAATGCCAACCTAGGAT
CAAACCAAGTGGTTCTTTACGAGCTTTCATCACATCAAAAGTTGATTTCA
ATGCTTTGATATGTCCCTCGGTTGTA

Coding sequence (CDS) from alignment at sc0000259:248705..249380

>TCONS_00017137 ID=TCONS_00017137|Name=TCONS_00017137|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at sc0000259:248705..249380 (Clytia hemisphaerica)
TCATAAGTATTTTTTGGCCAGTTCGTTGAAgttcttttcaaaaatgttca
ataTGATACCCGGATCGTTCATCACTATAGAATCCGCTTGAGCAGAGATC
CGAATCTGTTCTTGAAAACTACAAAACGAAATTGAAAAAGCTTGATTGCA
AAGAGCGGGTTGCCAAAAAGATAGAGAATCAACATTTAATCCTTgcattt
tgattgattgatttggACCAATCAGATTCGTTACATTTCCCGTTGTTTTA
TCAATCTCGTTGAACATAAGTTTCTCCAAGAAAAATACCGGTAGAATAAA
ACCAATAAAATGCCAACCTAGGATCAAACCAAGTGGTTCTTTACGAGCTT
TCATCACATCAAAAGTTGATTTCAATGCTTTGATATGTCCCTCGGTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009588XLOC_009588Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017137-proteinTCONS_00017137-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017137-exon-sc0000259-1491911889:248705..249380TCONS_00017137-exon-sc0000259-1491911889:248705..249380Clytia hemisphaericaexon
TCONS_00017137-exon-sc0000259-1510915933:248705..249380TCONS_00017137-exon-sc0000259-1510915933:248705..249380Clytia hemisphaericaexon
TCONS_00017137-exon-sc0000259-1575043694:248705..249380TCONS_00017137-exon-sc0000259-1575043694:248705..249380Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000259supercontigsc0000259:248705..249380 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.93039	0.969164	1.62824	1.83226	3.34034	1.8182	2.1231	3.32492	0.62936	1.65149	0.246638	2.2887	3.00032	1.43006	1.20345	1.57585	5.5319	2.00137	2.60942	3.12296	3.40641	5.9664	2.11147	2.52784	2.81477	3.50795	4.76091	2.91067	1.26576	1.19152
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009721O-acyltransferase_WSD1_C
Vocabulary: Molecular Function
TermDefinition
GO:0004144diacylglycerol O-acyltransferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004144 diacylglycerol O-acyltransferase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017137 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600Sequence
Match NameE-valueIdentityDescription
back to top