TCONS_00017090 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017090
Unique NameTCONS_00017090
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017090 ID=TCONS_00017090|Name=TCONS_00017090|organism=Clytia hemisphaerica|type=transcript|length=305bp
CTAAGAGTATATTTAGATAAAGCAATTGAATTGTTGCGAGCATTTACTAC
ATCTGTAGAGGAAAAATGATTCAATTGTGgtgtttatttgttaaaataAG
CAATTATGAGTAATAATTAAACATCTGCAGGAGGGAGTTGAACTGATGTA
GTGTTTGATGCTTGAAAATAAGTGCCTTGCAAGACTTTTTATTCTctctt
taaattattttattataaaaaaaaaggatttaaacctttatttgacttta
tatttgtgatttttgtgATGTGATAATTGATCTCCCCTAGTTTGGAGAAA
TTTGC
Run BLAST on NCBI

transcript from alignment at sc0000257:338626..338930

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017090 ID=TCONS_00017090|Name=TCONS_00017090|organism=Clytia hemisphaerica|type=transcript|length=305bp|location=Sequence derived from alignment at sc0000257:338626..338930 (Clytia hemisphaerica)
GCAAATTTCTCCAAACTAGGGGAGATCAATTATCACATcacaaaaatcac
aaatataaagtcaaataaaggtttaaatcctttttttttataataaaata
atttaaagagAGAATAAAAAGTCTTGCAAGGCACTTATTTTCAAGCATCA
AACACTACATCAGTTCAACTCCCTCCTGCAGATGTTTAATTATTACTCAT
AATTGCTtattttaacaaataaacacCACAATTGAATCATTTTTCCTCTA
CAGATGTAGTAAATGCTCGCAACAATTCAATTGCTTTATCTAAATATACT
CTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009555XLOC_009555Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017090-exon-sc0000257-1491911889:338626..338930TCONS_00017090-exon-sc0000257-1491911889:338626..338930Clytia hemisphaericaexon
TCONS_00017090-exon-sc0000257-1510915933:338626..338930TCONS_00017090-exon-sc0000257-1510915933:338626..338930Clytia hemisphaericaexon
TCONS_00017090-exon-sc0000257-1575043694:338626..338930TCONS_00017090-exon-sc0000257-1575043694:338626..338930Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000257supercontigsc0000257:338626..338930 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.58489	1.44038	0	1.22715	0.995961	1.18053	1.89902	2.66676	2.00719	1.54177	0.748239	0.257645	0.491179	0.510094	1.2581	0.450045	0	1.46536	1.17763	0.410767	0.714062	2.08977	2.54038	1.53972	0.396468	2.12303	1.01268	0	1.22958	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017090 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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