TCONS_00017088 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017088
Unique NameTCONS_00017088
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length317

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017088 ID=TCONS_00017088|Name=TCONS_00017088|organism=Clytia hemisphaerica|type=transcript|length=317bp
gaaaattttgttcgaaaagaatttcgcgaaattcgaagaaattttccaac
aaaaaccgaACATCGTCAACTCGTTGCGTGATGGTCTTGGTCGGACACTT
CTCATGGTGGCTGTTTATAAAGATCGTTTCGACGTTTTCGTTCACTTGAT
GGATTATCCTCAAGATTTTTCACTCGTGACCAATGGTGGTCGGAACGTTC
TTCATTTTGTTGGTCGTCATGGAGAAGTTCGTTATTTGGAAATGTTTGAT
CAACAAACCATCAAAATGTTGATCGATGGAAGAGACGAATATAACGAAAC
ACCATTGCATTGGGCAG
Run BLAST on NCBI

protein sequence of TCONS_00017088-protein

>TCONS_00017088-protein ID=TCONS_00017088-protein|Name=TCONS_00017088-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
KILFEKNFAKFEEIFQQKPNIVNSLRDGLGRTLLMVAVYKDRFDVFVHLM
DYPQDFSLVTNGGRNVLHFVGRHGEVRYLEMFDQQTIKMLIDGRDEYNET
PLHWA
Run BLAST on NCBI

transcript from alignment at sc0000257:317163..317479

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017088 ID=TCONS_00017088|Name=TCONS_00017088|organism=Clytia hemisphaerica|type=transcript|length=317bp|location=Sequence derived from alignment at sc0000257:317163..317479 (Clytia hemisphaerica)
CTGCCCAATGCAATGGTGTTTCGTTATATTCGTCTCTTCCATCGATCAAC
ATTTTGATGGTTTGTTGATCAAACATTTCCAAATAACGAACTTCTCCATG
ACGACCAACAAAATGAAGAACGTTCCGACCACCATTGGTCACGAGTGAAA
AATCTTGAGGATAATCCATCAAGTGAACGAAAACGTCGAAACGATCTTTA
TAAACAGCCACCATGAGAAGTGTCCGACCAAGACCATCACGCAACGAGTT
GACGATGTtcggtttttgttggaaaatttcttcgaatttcgcgaaattct
tttcgaacaaaattttc

Coding sequence (CDS) from alignment at sc0000257:317163..317479

>TCONS_00017088 ID=TCONS_00017088|Name=TCONS_00017088|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0000257:317163..317479 (Clytia hemisphaerica)
TGCCCAATGCAATGGTGTTTCGTTATATTCGTCTCTTCCATCGATCAACA
TTTTGATGGTTTGTTGATCAAACATTTCCAAATAACGAACTTCTCCATGA
CGACCAACAAAATGAAGAACGTTCCGACCACCATTGGTCACGAGTGAAAA
ATCTTGAGGATAATCCATCAAGTGAACGAAAACGTCGAAACGATCTTTAT
AAACAGCCACCATGAGAAGTGTCCGACCAAGACCATCACGCAACGAGTTG
ACGATGTtcggtttttgttggaaaatttcttcgaatttcgcgaaattctt
ttcgaacaaaatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009553XLOC_009553Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017088-proteinTCONS_00017088-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017088-exon-sc0000257-1491911889:317163..317479TCONS_00017088-exon-sc0000257-1491911889:317163..317479Clytia hemisphaericaexon
TCONS_00017088-exon-sc0000257-1510915933:317163..317479TCONS_00017088-exon-sc0000257-1510915933:317163..317479Clytia hemisphaericaexon
TCONS_00017088-exon-sc0000257-1575043694:317163..317479TCONS_00017088-exon-sc0000257-1575043694:317163..317479Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000257supercontigsc0000257:317163..317479 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.707314	0	0	1.32875	0.349999	1.26678	1.18594	0.568761	2.08508	0	0	8.65373	5.22953	6.43131	5.2457	1.32056	6.51338	16.3183	15.6521	4.36394	4.39079	2.64229	4.43607	4.23156	3.46185	14.4359	12.2655	14.7008	20.7241
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020683Ankyrin_rpt-contain_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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