TCONS_00017083 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017083
Unique NameTCONS_00017083
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length447

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017083 ID=TCONS_00017083|Name=TCONS_00017083|organism=Clytia hemisphaerica|type=transcript|length=447bp
CAAGTTTAGCTGATAAAGATGTGGTGTGGGCTTTCCAGTTGAGGTGCATG
TCAATCAAAACGCcaagatatttgatatttgaattttgaaaaattttctt
acctccaattttaagaaaagggacaaaaggaagaatttttcgacagtgtt
tgaaaattaaaaattctgtttttccaGCATTAAGGGATATTTTATTGGCT
TTGAGCCAAGTTTGGAGGGATCTTAGGTCACGATTGACTCTGTTGCAAAG
GGAAAGAAGATcatcattaaaatgtaaaatatgggTATCATCAGCGAAAT
GAACAGTTTCACTTGAAAAGATTGCATTGTGAAGATCATTTAAAATATAG
ATTAAAAATAAGAGAGGTCCTAGAACAGAGCCTTGTGGAACACCATGAGG
GATTATTTTAATAGAAGATTTATTAGATGAAATAGAGACAAACTGGG
Run BLAST on NCBI

protein sequence of TCONS_00017083-protein

>TCONS_00017083-protein ID=TCONS_00017083-protein|Name=TCONS_00017083-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
QFVSISSNKSSIKIIPHGVPQGSVLGPLLFLIYILNDLHNAIFSSETVHF
ADDTHILHFNDDLLSLCNRVNRDLRSLQTWLKANKISLNAGKTEFLIFKH
CRKILPFVPFLKIGGKKIFQNSNIKYLGVLIDMHLNWKAHTTSLSAKL
Run BLAST on NCBI

transcript from alignment at sc0000257:170056..170502

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017083 ID=TCONS_00017083|Name=TCONS_00017083|organism=Clytia hemisphaerica|type=transcript|length=447bp|location=Sequence derived from alignment at sc0000257:170056..170502 (Clytia hemisphaerica)
CCCAGTTTGTCTCTATTTCATCTAATAAATCTTCTATTAAAATAATCCCT
CATGGTGTTCCACAAGGCTCTGTTCTAGGACCTCTCTTATTTTTAATCTA
TATTTTAAATGATCTTCACAATGCAATCTTTTCAAGTGAAACTGTTCATT
TCGCTGATGATAcccatattttacattttaatgatgATCTTCTTTCCCTT
TGCAACAGAGTCAATCGTGACCTAAGATCCCTCCAAACTTGGCTCAAAGC
CAATAAAATATCCCTTAATGCtggaaaaacagaatttttaattttcaaac
actgtcgaaaaattcttccttttgtcccttttcttaaaattggaggtaag
aaaatttttcaaaattcaaatatcaaatatcttgGCGTTTTGATTGACAT
GCACCTCAACTGGAAAGCCCACACCACATCTTTATCAGCTAAACTTG

Coding sequence (CDS) from alignment at sc0000257:170056..170502

>TCONS_00017083 ID=TCONS_00017083|Name=TCONS_00017083|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0000257:170056..170502 (Clytia hemisphaerica)
CAGTTTGTCTCTATTTCATCTAATAAATCTTCTATTAAAATAATCCCTCA
TGGTGTTCCACAAGGCTCTGTTCTAGGACCTCTCTTATTTTTAATCTATA
TTTTAAATGATCTTCACAATGCAATCTTTTCAAGTGAAACTGTTCATTTC
GCTGATGATAcccatattttacattttaatgatgATCTTCTTTCCCTTTG
CAACAGAGTCAATCGTGACCTAAGATCCCTCCAAACTTGGCTCAAAGCCA
ATAAAATATCCCTTAATGCtggaaaaacagaatttttaattttcaaacac
tgtcgaaaaattcttccttttgtcccttttcttaaaattggaggtaagaa
aatttttcaaaattcaaatatcaaatatcttgGCGTTTTGATTGACATGC
ACCTCAACTGGAAAGCCCACACCACATCTTTATCAGCTAAACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009548XLOC_009548Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017083-proteinTCONS_00017083-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017083-exon-sc0000257-1491911889:170056..170502TCONS_00017083-exon-sc0000257-1491911889:170056..170502Clytia hemisphaericaexon
TCONS_00017083-exon-sc0000257-1510915933:170056..170502TCONS_00017083-exon-sc0000257-1510915933:170056..170502Clytia hemisphaericaexon
TCONS_00017083-exon-sc0000257-1575043694:170056..170502TCONS_00017083-exon-sc0000257-1575043694:170056..170502Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000257supercontigsc0000257:170056..170502 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.87081	4.10409	7.77927	5.02541	2.65412	3.25578	1.41055	0.364215	0.832391	1.44717	0	2.64232	1.12799	2.09622	0.388869	0.82697	2.31444	1.49766	0.746949	2.05759	2.66573	1.52449	1.04986	1.64844	1.61452	3.2851	1.63695	4.48017	1.06252	1.70878
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017083 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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