TCONS_00017003 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017003
Unique NameTCONS_00017003
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length785

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017003 ID=TCONS_00017003|Name=TCONS_00017003|organism=Clytia hemisphaerica|type=transcript|length=785bp
CTGGTGGCGAtgtttctggtgaatgcaatacTGGAGATGAAGGTTCTGGT
GGTTGCAATGCTGGTAATGATAGCTCGTGTGATTGCAATGTTGGTGAAGA
TCGTTCTAGAGGTTCCAATGTTGGTTGGGATGGTTCTGGTGATCGCAATG
CTGGTGAATATGGTTCTGTTGATTGCAATGCTGGTGGACTTGGTTTTAAT
GATTGCAGTCTGGTCGAGATAGTTCTGGTGATTGTAATGCCAGCGAATTT
GGTTCTAGTGATTCCAATACTGGTTAAGATGGACCTGACCAATGCAATGC
TTCttttgatggttctggtcaatATAATACTggtgaaaatgtttttggta
ttttgcgATGCTGATGGAGATTTGATTTGATCAATGTAATGTTGAATACA
GTTCTGGTGAATGCAGTGgtgcaaatgatggaatcaatggtgtggAAGTT
TGAGTCAATTTTACAGATGATGAAATCCGATCAACGAGAACAAGTCCACC
AGTATTGCAATCGCCAGAACTTTTATCTCCCGTATTGCAATCACCAAAGC
CATCTCCATCAGCATTGAAATCACCAAGACCAAGTCCATCAGCGTGGCAA
TCACCAGAAACATATCGACCAGCATGGCAATCACCAGAACCATCTCCACC
AGCATTGCAACCACCAGAACCATCCTTACCAGCATTGCCATCACCAGGTC
TCCAGCATGAAGCTCTCACGGGTTCTAACATCGCGAGATTACgaattgtt
tttaaatatttggaAACGATTGTGGTAAAGTCaac
Run BLAST on NCBI

protein sequence of TCONS_00017003-protein

>TCONS_00017003-protein ID=TCONS_00017003-protein|Name=TCONS_00017003-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
VDFTTIVSKYLKTIRNLAMLEPVRASCWRPGDGNAGKDGSGGCNAGGDGS
GDCHAGRYVSGDCHADGLGLGDFNADGDGFGDCNTGDKSSGDCNTGGLVL
VDRISSSVKLTQTSTPLIPSFAPLHSPELYSTLH
Run BLAST on NCBI

transcript from alignment at sc0000255:383777..384561

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017003 ID=TCONS_00017003|Name=TCONS_00017003|organism=Clytia hemisphaerica|type=transcript|length=785bp|location=Sequence derived from alignment at sc0000255:383777..384561 (Clytia hemisphaerica)
gttGACTTTACCACAATCGTTtccaaatatttaaaaacaattcGTAATCT
CGCGATGTTAGAACCCGTGAGAGCTTCATGCTGGAGACCTGGTGATGGCA
ATGCTGGTAAGGATGGTTCTGGTGGTTGCAATGCTGGTGGAGATGGTTCT
GGTGATTGCCATGCTGGTCGATATGTTTCTGGTGATTGCCACGCTGATGG
ACTTGGTCTTGGTGATTTCAATGCTGATGGAGATGGCTTTGGTGATTGCA
ATACGGGAGATAAAAGTTCTGGCGATTGCAATACTGGTGGACTTGTTCTC
GTTGATCGGATTTCATCATCTGTAAAATTGACTCAAACTTccacaccatt
gattccatcatttgcacCACTGCATTCACCAGAACTGTATTCAACATTAC
ATTGATCAAATCAAATCTCCATCAGCATcgcaaaataccaaaaacatttt
caccAGTATTATattgaccagaaccatcaaaaGAAGCATTGCATTGGTCA
GGTCCATCTTAACCAGTATTGGAATCACTAGAACCAAATTCGCTGGCATT
ACAATCACCAGAACTATCTCGACCAGACTGCAATCATTAAAACCAAGTCC
ACCAGCATTGCAATCAACAGAACCATATTCACCAGCATTGCGATCACCAG
AACCATCCCAACCAACATTGGAACCTCTAGAACGATCTTCACCAACATTG
CAATCACACGAGCTATCATTACCAGCATTGCAACCACCAGAACCTTCATC
TCCAgtattgcattcaccagaaacaTCGCCACCAG

Coding sequence (CDS) from alignment at sc0000255:383777..384561

>TCONS_00017003 ID=TCONS_00017003|Name=TCONS_00017003|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at sc0000255:383777..384561 (Clytia hemisphaerica)
gttGACTTTACCACAATCGTTtccaaatatttaaaaacaattcGTAATCT
CGCGATGTTAGAACCCGTGAGAGCTTCATGCTGGAGACCTGGTGATGGCA
ATGCTGGTAAGGATGGTTCTGGTGGTTGCAATGCTGGTGGAGATGGTTCT
GGTGATTGCCATGCTGGTCGATATGTTTCTGGTGATTGCCACGCTGATGG
ACTTGGTCTTGGTGATTTCAATGCTGATGGAGATGGCTTTGGTGATTGCA
ATACGGGAGATAAAAGTTCTGGCGATTGCAATACTGGTGGACTTGTTCTC
GTTGATCGGATTTCATCATCTGTAAAATTGACTCAAACTTccacaccatt
gattccatcatttgcacCACTGCATTCACCAGAACTGTATTCAACATTAC
ATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009525XLOC_009525Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017003-exon-sc0000255-1491911889:383777..384561TCONS_00017003-exon-sc0000255-1491911889:383777..384561Clytia hemisphaericaexon
TCONS_00017003-exon-sc0000255-1510915933:383777..384561TCONS_00017003-exon-sc0000255-1510915933:383777..384561Clytia hemisphaericaexon
TCONS_00017003-exon-sc0000255-1575043694:383777..384561TCONS_00017003-exon-sc0000255-1575043694:383777..384561Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017003-proteinTCONS_00017003-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000255supercontigsc0000255:383777..384561 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.0410208	0.614457	0.467954	0.0349747	0	0	0	0.785701	0.616634	0	0	0	0	0	0.0590194	0	0	0.0683638	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017003 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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