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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017002 ID=TCONS_00017002|Name=TCONS_00017002|organism=Clytia hemisphaerica|type=transcript|length=2552bp
CTAACATTTTTCACTTCTCTGCCTAACATTTCCTGTGTACTTTACCGAAT
ATtacagaaatcttgaaaataaataattataaaaaaacgaaagtgaaaca
aGTGCTTACCCAAAAAGAAAACGAATGAAGTGAAAACTGTAAACAAATTA
AAGACCAGTTTTTGAGGGGAAAAGGCCGAGGGAAATGTATACAAACAAAC
CAGCAACATATAACAGCAAAAAGAAATGTTGGGACTGTTGACGGTATAAA
CAATAAAATACCACAGAATATGGCCATAAACAATCTAAATGATAATCTAA
ACATAAAAACCATATAATTTGACTCAAGACCACTTTGACGGGCATTATTG
ACAGAAACTGGTttctgaaaatgttgaaaacctGTTTTTCTTAACTACAC
CAACATGTGTATCTAACATGTGTATCTAATCAAATTGAATTGAGACGTTC
TGAATGGTTTCAGAGCTGTTCAGAAGCCTTTTAAAACCCTATTttaaaaa
agtgcaaaaatttGGACCCGCTTTGCAGGGCTGTTGGAGCAcgagggaaa
attttgaaaatatcaattttgatattttcatgaaatatttattctttttg
acaaaattagaaaaaagaaaGTCATTTGGACATTCCAATCAATAATTATG
ATTGTCAGAAGTTGGACTCCCATTAAATTGTCATTTCTGAATGCctaaaa
tggctaaaaaaattgaaacttcaACAAGCCATATCTTAAGAACCGCTTGG
AGTTAGATACTGACATTTTCAGTAACAATGGGAACCAGTGGGCGTCAGGC
CTAataccgtgaagtcaggtaacttgcatcagtggaggctaacatgcata
gccctcaaatgactgaccaatcaaagcagcaaaatatcaaaacaaatgaa
ctatgcagctTCGCTCGCAGCTATACTCTAccatgtttgtttttatttaa
ctttgtattttaaggaccagacagATCTGGACAGatcaaaaaaaggtcaa
aaagtaaaaaagtaaaaaagttgacaaattcgcgaaaataagttccccCG
AGAATTAATTATTTTGTGTAAAACatttctcgcgaaaattagtaaCCGTG
AAAGTTAATTGTATTGTAAATTTAAGTGTCTTGGATGAACTCTCCCTGCT
GCAATAGTCTACATAAACATTAAAATTCCAATATGCAATAATCCTTAAAT
ATCAAATCCATCATTTTCTAGGTACTCTAATAATGTAATATATATATCTA
ATCCAGTTAAAGCATCAGATGGTCGGAGTATATTCTCTATTTGGCAATAA
CACTCAAGTAATTCAtaaagatcttcattttttgaaactGGGCAGTGGTC
TAATCCAATCACATCTGCTGCAACACCAAGATCATCTTCCGAAGGTACAA
GTCCTTGGTTTTCAAAGCCTATTTCCTGAGGCATTACATATAAAATGTCT
GGTTTGCCCCCTGGTGCTGAAGCAGATTGTCTGACATTTCGGGAATTCCA
GACTCGTGCAAATTCATTCAATTCATTTTGGAGAATGGggagaaaaacaa
ataataatgtTTCAATATGAGTTTCCATGTATGACTTAAATAGTCCctgt
ttttccatttcttcaaaaaaatgaaTCCACCAGGACAGTCGATATTTTTT
CAATCTGGACCAAAATGATTCAATACGTTGATTGCGAGTTGATGTTGCAT
ACAAAAAACTATCATCAGAATTAgtgaaaaaaacttgtaaatctTGGATA
TATATGTTCTCAGTTCCCCTATCCATCCTGACAACCTTAGGtacaatttt
tgttttagtAACAAATTCAATATAAAACTTTGCAATAATAGCAGGGTCAT
TGTTTGTGGTAGATACTTTCAACCATAATAACTTCCGACTAAATCCATCC
ACTGCTCCATGTATACAGAATCCCCACTTCTTTAATTTATCATTGCCATC
GATATGGCATACATCATTGGGTCCCATAGTTTCATATATACGTCGTCTTA
TTACATTCCTAGATCTATCTTGAACTCCTTCTGGATCTAATATTCTGAGT
AAGCGACGTACCTTTTCTTTGGCAACCAAAACATTATACCTTAAATTAAT
GAACTCAGTCATTTGTCTGTAACCAACTTTGGAATTGGATGTTTGTAGTT
CATTTAAGATGATGTTTCTTAAATCATTCATTGAAATGGGATCATACTTT
TGAAGTCCATTCTTTTTACGGATATACTTTAACTGTCTTGGTGTCAAGTT
CCTTTAATGATGAAGATTAACGAGATTACAAATCTCATTGTTAGTGAGGG
TTTTCAAATTCGAATAGTACTTCACCAGATTCACAGTAGAAATGTTTTCT
GATAAATCTGTCCTCAATACAGTATCCATGGTCAATATCAAACTActtca
aattatcaaaaaatccACAAATAAAACTGCATGTCAGTCTGCTACACTGG
CTACcatgtttgttgtttgttttgaaatttgaaatgataaaacGGGCGGC
CGCCTGAATTGAGATGataaaaatacagaccagaatagatcAGCAAGATT
GA Run BLAST on NCBI protein sequence of TCONS_00017002-protein >TCONS_00017002-protein ID=TCONS_00017002-protein|Name=TCONS_00017002-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
MNDLRNIILNELQTSNSKVGYRQMTEFINLRYNVLVAKEKVRRLLRILDP
EGVQDRSRNVIRRRIYETMGPNDVCHIDGNDKLKKWGFCIHGAVDGFSRK
LLWLKVSTTNNDPAIIAKFYIEFVTKTKIVPKVVRMDRGTENIYIQDLQV
FFTNSDDSFLYATSTRNQRIESFWSRLKKYRLSWWIHFFEEMEKQGLFKS
YMETHIETLLFVFLPILQNELNEFARVWNSRNVRQSASAPGGKPDILYVM
PQEIGFENQGLVPSEDDLGVAADVIGLDHCPVSKNEDLYELLECYCQIEN
ILRPSDALTGLDIYITLLEYLENDGFDI Run BLAST on NCBI transcript from alignment at sc0000255:333971..336522 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017002 ID=TCONS_00017002|Name=TCONS_00017002|organism=Clytia hemisphaerica|type=transcript|length=2552bp|location=Sequence derived from alignment at sc0000255:333971..336522 (Clytia hemisphaerica)
TCAATCTTGCTgatctattctggtctgtatttttatCATCTCAATTCAGG
CGGCCGCCCgttttatcatttcaaatttcaaaacaaacaacaaacatgGT
AGCCAGTGTAGCAGACTGACATGCAGTTTTATTTGTggattttttgataa
tttgaagTAGTTTGATATTGACCATGGATACTGTATTGAGGACAGATTTA
TCAGAAAACATTTCTACTGTGAATCTGGTGAAGTACTATTCGAATTTGAA
AACCCTCACTAACAATGAGATTTGTAATCTCGTTAATCTTCATCATTAAA
GGAACTTGACACCAAGACAGTTAAAGTATATCCGTAAAAAGAATGGACTT
CAAAAGTATGATCCCATTTCAATGAATGATTTAAGAAACATCATCTTAAA
TGAACTACAAACATCCAATTCCAAAGTTGGTTACAGACAAATGACTGAGT
TCATTAATTTAAGGTATAATGTTTTGGTTGCCAAAGAAAAGGTACGTCGC
TTACTCAGAATATTAGATCCAGAAGGAGTTCAAGATAGATCTAGGAATGT
AATAAGACGACGTATATATGAAACTATGGGACCCAATGATGTATGCCATA
TCGATGGCAATGATAAATTAAAGAAGTGGGGATTCTGTATACATGGAGCA
GTGGATGGATTTAGTCGGAAGTTATTATGGTTGAAAGTATCTACCACAAA
CAATGACCCTGCTATTATTGCAAAGTTTTATATTGAATTTGTTactaaaa
caaaaattgtaCCTAAGGTTGTCAGGATGGATAGGGGAACTGAGAACATA
TATATCCAagatttacaagtttttttcacTAATTCTGATGATAGTTTTTT
GTATGCAACATCAACTCGCAATCAACGTATTGAATCATTTTGGTCCAGAT
TGAAAAAATATCGACTGTCCTGGTGGAttcatttttttgaagaaatggaa
aaacagGGACTATTTAAGTCATACATGGAAACTCATATTGAAacattatt
atttgtttttctccCCATTCTCCAAAATGAATTGAATGAATTTGCACGAG
TCTGGAATTCCCGAAATGTCAGACAATCTGCTTCAGCACCAGGGGGCAAA
CCAGACATTTTATATGTAATGCCTCAGGAAATAGGCTTTGAAAACCAAGG
ACTTGTACCTTCGGAAGATGATCTTGGTGTTGCAGCAGATGTGATTGGAT
TAGACCACTGCCCagtttcaaaaaatgaagatctttaTGAATTACTTGAG
TGTTATTGCCAAATAGAGAATATACTCCGACCATCTGATGCTTTAACTGG
ATTAGATATATATATTACATTATTAGAGTACCTAGAAAATGATGGATTTG
ATATTTAAGGATTATTGCATATTGGAATTTTAATGTTTATGTAGACTATT
GCAGCAGGGAGAGTTCATCCAAGACACTTAAATTTACAATACAATTAACT
TTCACGGttactaattttcgcgagaaatGTTTTACACAAAATAATTAATT
CTCGggggaacttattttcgcgaatttgtcaacttttttacttttttact
ttttgacctttttttgatCTGTCCAGATctgtctggtccttaaaatacaa
agttaaataaaaacaaacatggTAGAGTATAGCTGCGAGCGAagctgcat
agttcatttgttttgatattttgctgctttgattggtcagtcatttgagg
gctatgcatgttagcctccactgatgcaagttacctgacttcacggtatT
AGGCCTGACGCCCACTGGTTCCCATTGTTACTGAAAATGTCAGTATCTAA
CTCCAAGCGGTTCTTAAGATATGGCTTGTtgaagtttcaatttttttagc
cattttagGCATTCAGAAATGACAATTTAATGGGAGTCCAACTTCTGACA
ATCATAATTATTGATTGGAATGTCCAAATGACtttcttttttctaatttt
gtcaaaaagaataaatatttcatgaaaatatcaaaattgatattttcaaa
attttccctcgTGCTCCAACAGCCCTGCAAAGCGGGTCCaaatttttgca
cttttttaaAATAGGGTTTTAAAAGGCTTCTGAACAGCTCTGAAACCATT
CAGAACGTCTCAATTCAATTTGATTAGATACACATGTTAGATACACATGT
TGGTGTAGTTAAGAAAAACaggttttcaacattttcagaaACCAGTTTCT
GTCAATAATGCCCGTCAAAGTGGTCTTGAGTCAAATTATATGGTTTTTAT
GTTTAGATTATCATTTAGATTGTTTATGGCCATATTCTGTGGTATTTTAT
TGTTTATACCGTCAACAGTCCCAACATTTCTTTTTGCTGTTATATGTTGC
TGGTTTGTTTGTATACATTTCCCTCGGCCTTTTCCCCTCAAAAACTGGTC
TTTAATTTGTTTACAGTTTTCACTTCATTCGTTTTCTTTTTGGGTAAGCA
Cttgtttcactttcgtttttttataattatttattttcaagatttctgta
ATATTCGGTAAAGTACACAGGAAATGTTAGGCAGAGAAGTGAAAAATGTT
AG Coding sequence (CDS) from alignment at sc0000255:333971..336522 >TCONS_00017002 ID=TCONS_00017002|Name=TCONS_00017002|organism=Clytia hemisphaerica|type=CDS|length=987bp|location=Sequence derived from alignment at sc0000255:333971..336522 (Clytia hemisphaerica)
ATGAATGATTTAAGAAACATCATCTTAAATGAACTACAAACATCCAATTC
CAAAGTTGGTTACAGACAAATGACTGAGTTCATTAATTTAAGGTATAATG
TTTTGGTTGCCAAAGAAAAGGTACGTCGCTTACTCAGAATATTAGATCCA
GAAGGAGTTCAAGATAGATCTAGGAATGTAATAAGACGACGTATATATGA
AACTATGGGACCCAATGATGTATGCCATATCGATGGCAATGATAAATTAA
AGAAGTGGGGATTCTGTATACATGGAGCAGTGGATGGATTTAGTCGGAAG
TTATTATGGTTGAAAGTATCTACCACAAACAATGACCCTGCTATTATTGC
AAAGTTTTATATTGAATTTGTTactaaaacaaaaattgtaCCTAAGGTTG
TCAGGATGGATAGGGGAACTGAGAACATATATATCCAagatttacaagtt
tttttcacTAATTCTGATGATAGTTTTTTGTATGCAACATCAACTCGCAA
TCAACGTATTGAATCATTTTGGTCCAGATTGAAAAAATATCGACTGTCCT
GGTGGAttcatttttttgaagaaatggaaaaacagGGACTATTTAAGTCA
TACATGGAAACTCATATTGAAacattattatttgtttttctccCCATTCT
CCAAAATGAATTGAATGAATTTGCACGAGTCTGGAATTCCCGAAATGTCA
GACAATCTGCTTCAGCACCAGGGGGCAAACCAGACATTTTATATGTAATG
CCTCAGGAAATAGGCTTTGAAAACCAAGGACTTGTACCTTCGGAAGATGA
TCTTGGTGTTGCAGCAGATGTGATTGGATTAGACCACTGCCCagtttcaa
aaaatgaagatctttaTGAATTACTTGAGTGTTATTGCCAAATAGAGAAT
ATACTCCGACCATCTGATGCTTTAACTGGATTAGATATATATATTACATT
ATTAGAGTACCTAGAAAATGATGGATTTGATATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017002-exon-sc0000255-1491911889:333971..336522 | TCONS_00017002-exon-sc0000255-1491911889:333971..336522 | Clytia hemisphaerica | exon |
| TCONS_00017002-exon-sc0000255-1510915933:333971..336522 | TCONS_00017002-exon-sc0000255-1510915933:333971..336522 | Clytia hemisphaerica | exon |
| TCONS_00017002-exon-sc0000255-1575043694:333971..336522 | TCONS_00017002-exon-sc0000255-1575043694:333971..336522 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000255 | supercontig | sc0000255:333971..336522 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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