TCONS_00017001 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017001
Unique NameTCONS_00017001
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length481

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017001 ID=TCONS_00017001|Name=TCONS_00017001|organism=Clytia hemisphaerica|type=transcript|length=481bp
CCACCCAAATCAACAGAACTCTAAACCATCATAAAGTAAAATTAGACATT
GTTAAATCAACAGGGTCTTCAATTGGTAATCTTCTTTTTCACAACAATGT
ACAAAGTCATTTTCCTAAGCCATGTTCTCGTCGTTGTGATATCTGTTCTA
ATGAAATTCGAAATGAAAACACTCACGTTGAGTCCCCAACTAATGGCAGG
AGCTACCCCATTAACGCACGTCTAACTTGTACTGATTGTGGTATCTACTG
TATCTCATGTTCGTGTTTATCTATGTACATTGGGAAAACCACCACCCATT
TCAACCAGCGTTTTAAAGAACATTTCCAACAATCGAGAACTTCAGCAGTG
TTAGAACACTCAAAAGTATGTAGtgttggaaaagaaaaaactgactttgc
tgtccaatatctGGAAAGCATTCACTCAATGGGGAAATATACATTGTCTG
AAAGGGAATATCTATGGAACGAACGTTTGAG
Run BLAST on NCBI

protein sequence of TCONS_00017001-protein

>TCONS_00017001-protein ID=TCONS_00017001-protein|Name=TCONS_00017001-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
TQINRTLNHHKVKLDIVKSTGSSIGNLLFHNNVQSHFPKPCSRRCDICSN
EIRNENTHVESPTNGRSYPINARLTCTDCGIYCISCSCLSMYIGKTTTHF
NQRFKEHFQQSRTSAVLEHSKVCSVGKEKTDFAVQYLESIHSMGKYTLSE
REYLWNERL
Run BLAST on NCBI

transcript from alignment at sc0000255:303881..304361

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017001 ID=TCONS_00017001|Name=TCONS_00017001|organism=Clytia hemisphaerica|type=transcript|length=481bp|location=Sequence derived from alignment at sc0000255:303881..304361 (Clytia hemisphaerica)
CTCAAACGTTCGTTCCATAGATATTCCCTTTCAGACAATGTATATTTCCC
CATTGAGTGAATGCTTTCCagatattggacagcaaagtcagttttttctt
ttccaacaCTACATACTTTTGAGTGTTCTAACACTGCTGAAGTTCTCGAT
TGTTGGAAATGTTCTTTAAAACGCTGGTTGAAATGGGTGGTGGTTTTCCC
AATGTACATAGATAAACACGAACATGAGATACAGTAGATACCACAATCAG
TACAAGTTAGACGTGCGTTAATGGGGTAGCTCCTGCCATTAGTTGGGGAC
TCAACGTGAGTGTTTTCATTTCGAATTTCATTAGAACAGATATCACAACG
ACGAGAACATGGCTTAGGAAAATGACTTTGTACATTGTTGTGAAAAAGAA
GATTACCAATTGAAGACCCTGTTGATTTAACAATGTCTAATTTTACTTTA
TGATGGTTTAGAGTTCTGTTGATTTGGGTGG

Coding sequence (CDS) from alignment at sc0000255:303881..304361

>TCONS_00017001 ID=TCONS_00017001|Name=TCONS_00017001|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at sc0000255:303881..304361 (Clytia hemisphaerica)
CAAACGTTCGTTCCATAGATATTCCCTTTCAGACAATGTATATTTCCCCA
TTGAGTGAATGCTTTCCagatattggacagcaaagtcagttttttctttt
ccaacaCTACATACTTTTGAGTGTTCTAACACTGCTGAAGTTCTCGATTG
TTGGAAATGTTCTTTAAAACGCTGGTTGAAATGGGTGGTGGTTTTCCCAA
TGTACATAGATAAACACGAACATGAGATACAGTAGATACCACAATCAGTA
CAAGTTAGACGTGCGTTAATGGGGTAGCTCCTGCCATTAGTTGGGGACTC
AACGTGAGTGTTTTCATTTCGAATTTCATTAGAACAGATATCACAACGAC
GAGAACATGGCTTAGGAAAATGACTTTGTACATTGTTGTGAAAAAGAAGA
TTACCAATTGAAGACCCTGTTGATTTAACAATGTCTAATTTTACTTTATG
ATGGTTTAGAGTTCTGTTGATTTGGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009523XLOC_009523Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017001-proteinTCONS_00017001-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017001-exon-sc0000255-1491911889:303881..304361TCONS_00017001-exon-sc0000255-1491911889:303881..304361Clytia hemisphaericaexon
TCONS_00017001-exon-sc0000255-1510915933:303881..304361TCONS_00017001-exon-sc0000255-1510915933:303881..304361Clytia hemisphaericaexon
TCONS_00017001-exon-sc0000255-1575043694:303881..304361TCONS_00017001-exon-sc0000255-1575043694:303881..304361Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000255supercontigsc0000255:303881..304361 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.04346	1.14473	3.24902	5.77938	1.58306	1.80694	2.34769	2.19788	1.42887	1.63374	2.24648	1.99795	1.38795	0.990962	1.55535	1.74861	1.66456	1.40504	2.21845	1.59599	0.37833	1.29175	1.34597	0.95175	1.82052	2.74961	1.43079	1.14524	1.15816	1.32748
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_SF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017001 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top