TCONS_00016996 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016996
Unique NameTCONS_00016996
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016996 ID=TCONS_00016996|Name=TCONS_00016996|organism=Clytia hemisphaerica|type=transcript|length=499bp
GATCAGAACCACACCTCGCCTACTGTGCATTCGTTGGTGGGTATGTTAGC
AAGTTCACCTACTACCTACGTGTGATGCCCGGAATTGAGGAGTATCTGAA
GCCCATCGATGAAGTTATTGACAAACATTTTATTCCTTCAATTACTGAAA
ACCATCACTGCAGCACCGAAGAAAGACTACTCTTGTCACTACCGGTGCGT
ATGGGAGGATTGGCCATACCCATCTTATCATCTCTGTCGAAGGAAGAATT
TCAAAACTCCAGAGAACTTACAATGAAGTTCTCCCAAGACATCATCGAAC
CGAAACCAGTGTGCGAAGTTGACAACAGAGCAGCAAAGTCTGAGATCAAG
AGAAAACGGAAAGAAGGAAGAACAATCATCCTCGAAAATCTCCGCAGAGA
AATGACACGTCAAGAGCTGAAAGCGAACGATCTTGCTCAAGCAAAAGGTG
CATCCAATTGGTTGACCACTGTACCcctgaaatctgaaaatttcaagct
Run BLAST on NCBI

protein sequence of TCONS_00016996-protein

>TCONS_00016996-protein ID=TCONS_00016996-protein|Name=TCONS_00016996-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
SEPHLAYCAFVGGYVSKFTYYLRVMPGIEEYLKPIDEVIDKHFIPSITEN
HHCSTEERLLLSLPVRMGGLAIPILSSLSKEEFQNSRELTMKFSQDIIEP
KPVCEVDNRAAKSEIKRKRKEGRTIILENLRREMTRQELKANDLAQAKGA
SNWLTTVPLKSENFK
Run BLAST on NCBI

transcript from alignment at sc0000255:291889..292387

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016996 ID=TCONS_00016996|Name=TCONS_00016996|organism=Clytia hemisphaerica|type=transcript|length=499bp|location=Sequence derived from alignment at sc0000255:291889..292387 (Clytia hemisphaerica)
agcttgaaattttcagatttcaggGGTACAGTGGTCAACCAATTGGATGC
ACCTTTTGCTTGAGCAAGATCGTTCGCTTTCAGCTCTTGACGTGTCATTT
CTCTGCGGAGATTTTCGAGGATGATTGTTCTTCCTTCTTTCCGTTTTCTC
TTGATCTCAGACTTTGCTGCTCTGTTGTCAACTTCGCACACTGGTTTCGG
TTCGATGATGTCTTGGGAGAACTTCATTGTAAGTTCTCTGGAGTTTTGAA
ATTCTTCCTTCGACAGAGATGATAAGATGGGTATGGCCAATCCTCCCATA
CGCACCGGTAGTGACAAGAGTAGTCTTTCTTCGGTGCTGCAGTGATGGTT
TTCAGTAATTGAAGGAATAAAATGTTTGTCAATAACTTCATCGATGGGCT
TCAGATACTCCTCAATTCCGGGCATCACACGTAGGTAGTAGGTGAACTTG
CTAACATACCCACCAACGAATGCACAGTAGGCGAGGTGTGGTTCTGATC

Coding sequence (CDS) from alignment at sc0000255:291889..292387

>TCONS_00016996 ID=TCONS_00016996|Name=TCONS_00016996|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at sc0000255:291889..292387 (Clytia hemisphaerica)
cttgaaattttcagatttcaggGGTACAGTGGTCAACCAATTGGATGCAC
CTTTTGCTTGAGCAAGATCGTTCGCTTTCAGCTCTTGACGTGTCATTTCT
CTGCGGAGATTTTCGAGGATGATTGTTCTTCCTTCTTTCCGTTTTCTCTT
GATCTCAGACTTTGCTGCTCTGTTGTCAACTTCGCACACTGGTTTCGGTT
CGATGATGTCTTGGGAGAACTTCATTGTAAGTTCTCTGGAGTTTTGAAAT
TCTTCCTTCGACAGAGATGATAAGATGGGTATGGCCAATCCTCCCATACG
CACCGGTAGTGACAAGAGTAGTCTTTCTTCGGTGCTGCAGTGATGGTTTT
CAGTAATTGAAGGAATAAAATGTTTGTCAATAACTTCATCGATGGGCTTC
AGATACTCCTCAATTCCGGGCATCACACGTAGGTAGTAGGTGAACTTGCT
AACATACCCACCAACGAATGCACAGTAGGCGAGGTGTGGTTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009518XLOC_009518Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016996-proteinTCONS_00016996-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016996-exon-sc0000255-1491911889:291889..292387TCONS_00016996-exon-sc0000255-1491911889:291889..292387Clytia hemisphaericaexon
TCONS_00016996-exon-sc0000255-1510915933:291889..292387TCONS_00016996-exon-sc0000255-1510915933:291889..292387Clytia hemisphaericaexon
TCONS_00016996-exon-sc0000255-1575043694:291889..292387TCONS_00016996-exon-sc0000255-1575043694:291889..292387Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000255supercontigsc0000255:291889..292387 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.78153	0.715787	1.48145	0.890289	0.494935	0.706075	0.314567	0.441741	0.515455	0.144623	0.371831	1.04059	0.76462	0.354462	0.277868	0.745487	0.207968	0.564786	0.780282	0.408254	1.18282	0.19574	0.280538	0.382575	0.964432	0.351675	0.838742	0.786711	0.407354	0.415029
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016996 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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